BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0014.p (383 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_318128.1| DEAD/DEAH box helicase [Nitrobacter winogradsky... 538 e-151 ref|NP_771243.1| ATP-dependent DNA helicase [Bradyrhizobium japo... 535 e-150 ref|YP_781705.1| DEAD/DEAH box helicase domain-containing protei... 533 e-149 ref|YP_001240126.1| ATP-dependent DNA helicase RecG [Bradyrhizob... 529 e-148 ref|YP_001205765.1| DNA helicase, ATP-dependent resolution of Ho... 526 e-147 >ref|YP_318128.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255] gb|ABA04776.1| ATP-dependent DNA helicase RecG [Nitrobacter winogradskyi Nb-255] Length = 699 Score = 538 bits (1386), Expect = e-151, Method: Compositional matrix adjust. Identities = 276/342 (80%), Positives = 304/342 (88%) Query: 1 MRPALLNPLFAQVTTLQGVGPKQDKLLRYLLDRSETPRLVDLLLHLPASVIDRRARPKIR 60 MRPALLNPLF VT+L GVGPKQD+L R+LL R ETPRLVDLL HLPASV+DRRARPKIR Sbjct: 1 MRPALLNPLFVPVTSLSGVGPKQDRLFRHLLARDETPRLVDLLFHLPASVVDRRARPKIR 60 Query: 61 DAAVGTMVTLEVTVDRHRPPPPRNSRAPYLVYASDDTGDVVLTFFRAQPGYVEKLLPVGE 120 DA GT+VTLEV+VDRHRP PP SRAP+LVYASD+TG VVLT+FRAQP YVEKLLP G Sbjct: 61 DAVPGTIVTLEVSVDRHRPAPPGRSRAPHLVYASDETGSVVLTYFRAQPSYVEKLLPAGS 120 Query: 121 KRYVSGTLAMYDGIPQIVHPDRVVDEAGFAKLSGIDPVYPLTEGLAIGSLRRAIAQALTR 180 KRYVSGT+ M+DG QIVHPDRVVDEAG A+LSGIDPVYPLT+GLA G+LRRAIAQAL Sbjct: 121 KRYVSGTVQMFDGTLQIVHPDRVVDEAGLAELSGIDPVYPLTQGLAPGALRRAIAQALQN 180 Query: 181 LPDLPEWISPEVLRRCNFPPIREALTRVHVPVELTDILPDGPFWSRLAFDELLAGQLALA 240 LP LPEW P++LRRC FPP+ +AL RVHVP+ELTD LP+GPFWSRLAFDELLAGQLAL Sbjct: 181 LPVLPEWTDPKILRRCGFPPLAQALRRVHVPLELTDTLPEGPFWSRLAFDELLAGQLALT 240 Query: 241 LIRATLRRPAGVRNAGDGHLRRKIIDALPYALTRSQQEAVAAIIADLQQPVRMLRLVQGD 300 L+RA LRRPAG R+AGDGHLR +IIDALPYALT SQQ+AVAAII DL+QPVRMLRL+QGD Sbjct: 241 LVRARLRRPAGNRHAGDGHLRNRIIDALPYALTASQQQAVAAIIEDLRQPVRMLRLLQGD 300 Query: 301 VGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAP 342 VGSGKTVVALLAA AVAE+GKQ ALMAPTE+LARQHIKTIAP Sbjct: 301 VGSGKTVVALLAACAVAESGKQTALMAPTEVLARQHIKTIAP 342 >ref|NP_771243.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110] dbj|BAC49868.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110] Length = 702 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 302/342 (88%), Positives = 321/342 (93%) Query: 1 MRPALLNPLFAQVTTLQGVGPKQDKLLRYLLDRSETPRLVDLLLHLPASVIDRRARPKIR 60 MRP+LLNPLFA VT+L GVGPKQDKLL+YLL R+ETPRLVDLLLHLP+ VIDRRARPKIR Sbjct: 1 MRPSLLNPLFAPVTSLPGVGPKQDKLLQYLLSRNETPRLVDLLLHLPSQVIDRRARPKIR 60 Query: 61 DAAVGTMVTLEVTVDRHRPPPPRNSRAPYLVYASDDTGDVVLTFFRAQPGYVEKLLPVGE 120 DA GTMVTLEVTVDRHRPPPPRN+RAPYLVYASD+TGDVVLTFFRA+PGYVEKLLPVGE Sbjct: 61 DAVQGTMVTLEVTVDRHRPPPPRNARAPYLVYASDETGDVVLTFFRAKPGYVEKLLPVGE 120 Query: 121 KRYVSGTLAMYDGIPQIVHPDRVVDEAGFAKLSGIDPVYPLTEGLAIGSLRRAIAQALTR 180 KRYVSGTL MYDGIPQIVHPDRV+DE +KLSGIDPVYPLTEGLA+GSLRRAIAQAL + Sbjct: 121 KRYVSGTLQMYDGIPQIVHPDRVLDEEAISKLSGIDPVYPLTEGLALGSLRRAIAQALQK 180 Query: 181 LPDLPEWISPEVLRRCNFPPIREALTRVHVPVELTDILPDGPFWSRLAFDELLAGQLALA 240 LP LPEWISPEV+RRC+FPPI EALTRVH PVELTDILPD PFWSRLAFDELLAGQLALA Sbjct: 181 LPALPEWISPEVMRRCHFPPIAEALTRVHQPVELTDILPDRPFWSRLAFDELLAGQLALA 240 Query: 241 LIRATLRRPAGVRNAGDGHLRRKIIDALPYALTRSQQEAVAAIIADLQQPVRMLRLVQGD 300 LIRA LRRPAG+RNAGDGHLR KIIDALPYALT SQ++A AAI +DLQQPVRMLRL+QGD Sbjct: 241 LIRAQLRRPAGIRNAGDGHLRNKIIDALPYALTLSQRDAAAAIASDLQQPVRMLRLLQGD 300 Query: 301 VGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAP 342 VGSGKTVVALLAAAAVAE GKQAALMAPTEILARQHIKTIAP Sbjct: 301 VGSGKTVVALLAAAAVAEVGKQAALMAPTEILARQHIKTIAP 342 >ref|YP_781705.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas palustris BisA53] gb|ABJ06725.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris BisA53] Length = 699 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 286/342 (83%), Positives = 309/342 (90%) Query: 1 MRPALLNPLFAQVTTLQGVGPKQDKLLRYLLDRSETPRLVDLLLHLPASVIDRRARPKIR 60 MRP LLNPLFA VT+L GVGPKQDKL RYLLDR++TPRLVDLLLHLP +VIDRRARPKIR Sbjct: 1 MRPELLNPLFALVTSLSGVGPKQDKLFRYLLDRADTPRLVDLLLHLPTTVIDRRARPKIR 60 Query: 61 DAAVGTMVTLEVTVDRHRPPPPRNSRAPYLVYASDDTGDVVLTFFRAQPGYVEKLLPVGE 120 DA GT+VTLEVTVDRHRP PP SRAP+LVYASDD+GDVVLT+FRAQPGYVEKLLPVG Sbjct: 61 DAVPGTVVTLEVTVDRHRPAPPGRSRAPHLVYASDDSGDVVLTYFRAQPGYVEKLLPVGA 120 Query: 121 KRYVSGTLAMYDGIPQIVHPDRVVDEAGFAKLSGIDPVYPLTEGLAIGSLRRAIAQALTR 180 KRYVSGT M+DG QIVHPDRVVDEAG A+L+GIDPVYPLTEGLA+GSLRRAIAQALT+ Sbjct: 121 KRYVSGTAQMFDGTLQIVHPDRVVDEAGLAQLTGIDPVYPLTEGLALGSLRRAIAQALTK 180 Query: 181 LPDLPEWISPEVLRRCNFPPIREALTRVHVPVELTDILPDGPFWSRLAFDELLAGQLALA 240 LP LPEWISP+VLRRC FPP+ EAL RVH P+ELTD+LP GPFWSRLA+DELLAGQLALA Sbjct: 181 LPALPEWISPDVLRRCGFPPLAEALQRVHRPIELTDVLPAGPFWSRLAYDELLAGQLALA 240 Query: 241 LIRATLRRPAGVRNAGDGHLRRKIIDALPYALTRSQQEAVAAIIADLQQPVRMLRLVQGD 300 L+RA LRRPAG RNAGDG LR +IIDALPYALT SQQ+A AAI DL+QPVRMLRL+QGD Sbjct: 241 LVRAQLRRPAGTRNAGDGQLRSRIIDALPYALTPSQQDAAAAIAEDLRQPVRMLRLLQGD 300 Query: 301 VGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAP 342 VGSGKTVVALLAAAAVAE GKQAALMAPTEILARQH KTI P Sbjct: 301 VGSGKTVVALLAAAAVAEVGKQAALMAPTEILARQHAKTITP 342 >ref|YP_001240126.1| ATP-dependent DNA helicase RecG [Bradyrhizobium sp. BTAi1] gb|ABQ36220.1| ATP-dependent DNA helicase RecG [Bradyrhizobium sp. BTAi1] Length = 700 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 287/342 (83%), Positives = 311/342 (90%), Gaps = 2/342 (0%) Query: 1 MRPALLNPLFAQVTTLQGVGPKQDKLLRYLLDRSETPRLVDLLLHLPASVIDRRARPKIR 60 MRPA+LNPLFA VTTL GVGPKQDKLLRYLL SETPRLVDLLLHLPASVIDRR RPK+R Sbjct: 1 MRPAILNPLFAPVTTLSGVGPKQDKLLRYLLSCSETPRLVDLLLHLPASVIDRRNRPKVR 60 Query: 61 DAAVGTMVTLEVTVDRHRPPPPRNSRAPYLVYASDDTGDVVLTFFRAQPGYVEKLLPVGE 120 DA VGT+VTLEVTVDRHRP RN+RAPYLVYASD+TGDVVLTFFR + Y+EK+LPVG Sbjct: 61 DAEVGTVVTLEVTVDRHRPS--RNARAPYLVYASDETGDVVLTFFRPKGDYIEKMLPVGA 118 Query: 121 KRYVSGTLAMYDGIPQIVHPDRVVDEAGFAKLSGIDPVYPLTEGLAIGSLRRAIAQALTR 180 KRYVSGT+ MYDG+PQIVHP ++DEA FAKLSGIDPVYPLTEGLA+GSLRRAI+ ALT+ Sbjct: 119 KRYVSGTVQMYDGVPQIVHPHPILDEAAFAKLSGIDPVYPLTEGLALGSLRRAISAALTK 178 Query: 181 LPDLPEWISPEVLRRCNFPPIREALTRVHVPVELTDILPDGPFWSRLAFDELLAGQLALA 240 LPDLPEWISPEVL RCNFPP++EALTRVH P ELTDILP+ PFWSRLAFDELLAGQLALA Sbjct: 179 LPDLPEWISPEVLNRCNFPPLKEALTRVHGPQELTDILPENPFWSRLAFDELLAGQLALA 238 Query: 241 LIRATLRRPAGVRNAGDGHLRRKIIDALPYALTRSQQEAVAAIIADLQQPVRMLRLVQGD 300 L+RA LRRPAG R+AGDGHLRRKIIDALPYALT SQ A+ AI DL++PVRMLRL+QGD Sbjct: 239 LVRAQLRRPAGNRHAGDGHLRRKIIDALPYALTNSQAGALDAIATDLEKPVRMLRLLQGD 298 Query: 301 VGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAP 342 VGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQH KTIAP Sbjct: 299 VGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHAKTIAP 340 >ref|YP_001205765.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Bradyrhizobium sp. ORS 278] emb|CAL77539.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Bradyrhizobium sp. ORS 278] Length = 700 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 291/342 (85%), Positives = 314/342 (91%), Gaps = 2/342 (0%) Query: 1 MRPALLNPLFAQVTTLQGVGPKQDKLLRYLLDRSETPRLVDLLLHLPASVIDRRARPKIR 60 MRPA+LNPLFA VTTL GVGPKQDKLLRYLL SETPRLVDLLLHLPASVIDRR RPK+R Sbjct: 1 MRPAILNPLFAPVTTLSGVGPKQDKLLRYLLSCSETPRLVDLLLHLPASVIDRRNRPKVR 60 Query: 61 DAAVGTMVTLEVTVDRHRPPPPRNSRAPYLVYASDDTGDVVLTFFRAQPGYVEKLLPVGE 120 D VGT+VTLEVTVDRHRP RN+RAPYLVYASDDTGDVVLTFFR + Y+EK+LPVG Sbjct: 61 DVEVGTVVTLEVTVDRHRPS--RNARAPYLVYASDDTGDVVLTFFRPKGDYIEKMLPVGA 118 Query: 121 KRYVSGTLAMYDGIPQIVHPDRVVDEAGFAKLSGIDPVYPLTEGLAIGSLRRAIAQALTR 180 KRYVSGT+ MYDGIPQIVHPDR++DEAGFAKLSGIDPVYPLTEGLA+GSLRRAIA ALT+ Sbjct: 119 KRYVSGTVQMYDGIPQIVHPDRILDEAGFAKLSGIDPVYPLTEGLALGSLRRAIAAALTK 178 Query: 181 LPDLPEWISPEVLRRCNFPPIREALTRVHVPVELTDILPDGPFWSRLAFDELLAGQLALA 240 LP+LPEWISPEVL RCNFP +REALTRVHVP ELTDILP+ PFWSRLAFDELLAGQLALA Sbjct: 179 LPELPEWISPEVLSRCNFPSLREALTRVHVPQELTDILPENPFWSRLAFDELLAGQLALA 238 Query: 241 LIRATLRRPAGVRNAGDGHLRRKIIDALPYALTRSQQEAVAAIIADLQQPVRMLRLVQGD 300 L+RA LRRPAG R+AGDG LRR+IIDALPYALT SQ +A+ AI ADL++PVRMLRL+QGD Sbjct: 239 LVRAQLRRPAGNRHAGDGRLRRRIIDALPYALTNSQAQAIEAIAADLEKPVRMLRLLQGD 298 Query: 301 VGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHIKTIAP 342 VGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQH KTIAP Sbjct: 299 VGSGKTVVALLAAAAVAEAGKQAALMAPTEILARQHAKTIAP 340