BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0013.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771243.1| ATP-dependent DNA helicase [Bradyrhizobium japo... 609 e-172 ref|ZP_08629800.1| ATP-dependent DNA helicase RecG [Bradyrhizobi... 573 e-161 ref|YP_532477.1| DEAD/DEAH box helicase-like protein [Rhodopseud... 572 e-161 ref|YP_001205765.1| DNA helicase, ATP-dependent resolution of Ho... 569 e-160 ref|YP_001240126.1| ATP-dependent DNA helicase RecG [Bradyrhizob... 569 e-160 >ref|NP_771243.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110] dbj|BAC49868.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110] Length = 702 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 298/325 (91%), Positives = 315/325 (96%) Query: 1 LVGTHALIQDDVVYKALALAVVDEQHRFGVRERLALTSKGEAVDVLVLSATPIPRTLVLT 60 LVGTHALIQDDV+++ LALAVVDEQHRFGVRERLALTSKGEAVDVLVLSATPIPRTLVLT Sbjct: 378 LVGTHALIQDDVIFRDLALAVVDEQHRFGVRERLALTSKGEAVDVLVLSATPIPRTLVLT 437 Query: 61 YFGDMDVSELREKPAGRQPIDTRAVPMSRIEDVMDGVGRALAAGKLVYWICPLVDESEAE 120 YFGDMD+SELREKPAGRQPI+TR + MSR+ +V D +GRAL AGKLVYWICPLV+ESEAE Sbjct: 438 YFGDMDISELREKPAGRQPIETRTISMSRLNEVTDSIGRALQAGKLVYWICPLVEESEAE 497 Query: 121 GTEHLTNATERFESLQQRFGDRVGLVHGQMKGTEKDRVMAQFAAHEIGLLVATTVVEVGV 180 GTEHLTNAT+RFE+LQ+RFGDRVGLVHGQMKGTEKDRVM QFAAHEIGLLVATTVVEVGV Sbjct: 498 GTEHLTNATKRFENLQKRFGDRVGLVHGQMKGTEKDRVMGQFAAHEIGLLVATTVVEVGV 557 Query: 181 DVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYKEPLGEMSKARLKVIRETT 240 DVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLY EPLGEMSKARLKVIRETT Sbjct: 558 DVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYSEPLGEMSKARLKVIRETT 617 Query: 241 DGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIARSEVHGQLITQARDEALRIMKDNPKLKG 300 DGFRIAEEDLKLRGEGDVLG+RQSGLPGYRIARSEVHGQLITQARDEALRI+KD+PKLKG Sbjct: 618 DGFRIAEEDLKLRGEGDVLGVRQSGLPGYRIARSEVHGQLITQARDEALRILKDDPKLKG 677 Query: 301 ERGEALRVLLYLYERDEAVPLIGAG 325 ERGEALR LLYLYERDEA+PLIGAG Sbjct: 678 ERGEALRCLLYLYERDEAIPLIGAG 702 >ref|ZP_08629800.1| ATP-dependent DNA helicase RecG [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07443.1| ATP-dependent DNA helicase RecG [Bradyrhizobiaceae bacterium SG-6C] Length = 731 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 282/325 (86%), Positives = 303/325 (93%) Query: 1 LVGTHALIQDDVVYKALALAVVDEQHRFGVRERLALTSKGEAVDVLVLSATPIPRTLVLT 60 LVGTHALIQDDV++K LALAVVDEQHRFGVRERLALT KG+AVDVLVLSATPIPRTLVLT Sbjct: 407 LVGTHALIQDDVIFKDLALAVVDEQHRFGVRERLALTEKGDAVDVLVLSATPIPRTLVLT 466 Query: 61 YFGDMDVSELREKPAGRQPIDTRAVPMSRIEDVMDGVGRALAAGKLVYWICPLVDESEAE 120 YFGDMD+SELREKPAGRQPIDTRAVP SRI++++DG+ RAL +GK YWICPLV+E+E+E Sbjct: 467 YFGDMDISELREKPAGRQPIDTRAVPKSRIKEIVDGLERALESGKRAYWICPLVEETESE 526 Query: 121 GTEHLTNATERFESLQQRFGDRVGLVHGQMKGTEKDRVMAQFAAHEIGLLVATTVVEVGV 180 HLTNAT+RFE+LQ+RFGDRVGLVHGQMKGTEKDRVMAQFAA E LLVATTVVEVGV Sbjct: 527 DHAHLTNATKRFETLQKRFGDRVGLVHGQMKGTEKDRVMAQFAAGETQLLVATTVVEVGV 586 Query: 181 DVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYKEPLGEMSKARLKVIRETT 240 DVP ATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLY EPL EMS ARLKVIRETT Sbjct: 587 DVPQATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYHEPLTEMSAARLKVIRETT 646 Query: 241 DGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIARSEVHGQLITQARDEALRIMKDNPKLKG 300 DGFRIAEEDL+LRGEG+VLG RQSGLPGYRIAR EVH QLI QARDEA+RIM+DNPKLKG Sbjct: 647 DGFRIAEEDLRLRGEGEVLGTRQSGLPGYRIARPEVHAQLIAQARDEAVRIMQDNPKLKG 706 Query: 301 ERGEALRVLLYLYERDEAVPLIGAG 325 ERGEALR LLYLYERDEA+PLIGAG Sbjct: 707 ERGEALRCLLYLYERDEALPLIGAG 731 >ref|YP_532477.1| DEAD/DEAH box helicase-like protein [Rhodopseudomonas palustris BisB18] gb|ABD88158.1| ATP-dependent DNA helicase RecG [Rhodopseudomonas palustris BisB18] Length = 699 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 285/325 (87%), Positives = 306/325 (94%), Gaps = 3/325 (0%) Query: 1 LVGTHALIQDDVVYKALALAVVDEQHRFGVRERLALTSKGEAVDVLVLSATPIPRTLVLT 60 LVGTHALIQDDVV+ LALAVVDEQHRFGVRERLALT+KG AVDVLVLSATPIPRTLVL+ Sbjct: 378 LVGTHALIQDDVVFNDLALAVVDEQHRFGVRERLALTNKGAAVDVLVLSATPIPRTLVLS 437 Query: 61 YFGDMDVSELREKPAGRQPIDTRAVPMSRIEDVMDGVGRALAAGKLVYWICPLVDESEAE 120 YFGDMD+SELREKPAGRQPIDTRAVP SR+ +VMD VGRALAAGKLVYWICPLV+ESE Sbjct: 438 YFGDMDLSELREKPAGRQPIDTRAVPNSRLNEVMDAVGRALAAGKLVYWICPLVEESE-- 495 Query: 121 GTEHLTNATERFESLQQRFGDRVGLVHGQMKGTEKDRVMAQFAAHEIGLLVATTVVEVGV 180 T HLT+A +RFESL+ R+GDRVGLVHG+M+G +KDRVMAQFAAHEIGLLVATTVVEVGV Sbjct: 496 -TVHLTDAEQRFESLKFRYGDRVGLVHGKMRGPDKDRVMAQFAAHEIGLLVATTVVEVGV 554 Query: 181 DVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYKEPLGEMSKARLKVIRETT 240 DVP ATIMVIENAERFGLAQLHQLRGRIGRGSE+STCLLLYKEPLGEMS ARL+VIRETT Sbjct: 555 DVPDATIMVIENAERFGLAQLHQLRGRIGRGSESSTCLLLYKEPLGEMSAARLRVIRETT 614 Query: 241 DGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIARSEVHGQLITQARDEALRIMKDNPKLKG 300 DGFRIAEEDLKLRGEGDVLG RQSGLPGYRIAR EVH QLI+QARDEAL+I+KDNPKLKG Sbjct: 615 DGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARPEVHAQLISQARDEALQILKDNPKLKG 674 Query: 301 ERGEALRVLLYLYERDEAVPLIGAG 325 ERGEALR LLYL+ERDEA+PLIGAG Sbjct: 675 ERGEALRCLLYLFERDEALPLIGAG 699 >ref|YP_001205765.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Bradyrhizobium sp. ORS 278] emb|CAL77539.1| DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration [Bradyrhizobium sp. ORS 278] Length = 700 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 279/325 (85%), Positives = 307/325 (94%) Query: 1 LVGTHALIQDDVVYKALALAVVDEQHRFGVRERLALTSKGEAVDVLVLSATPIPRTLVLT 60 L+GTHALIQDDV++K+LALA+VDEQHRFGVRERLALTSKGEAVDVLVLSATPIPRTLVLT Sbjct: 376 LIGTHALIQDDVMFKSLALAIVDEQHRFGVRERLALTSKGEAVDVLVLSATPIPRTLVLT 435 Query: 61 YFGDMDVSELREKPAGRQPIDTRAVPMSRIEDVMDGVGRALAAGKLVYWICPLVDESEAE 120 YFGDMD+SELREKPAGRQPIDTRAV +R +V+D VGRAL AGKLVYWICPLV+ESEAE Sbjct: 436 YFGDMDISELREKPAGRQPIDTRAVADTRRTEVIDAVGRALDAGKLVYWICPLVEESEAE 495 Query: 121 GTEHLTNATERFESLQQRFGDRVGLVHGQMKGTEKDRVMAQFAAHEIGLLVATTVVEVGV 180 G +HLTNAT+R+ESL++RFG+RVGLVHG+MKG+EKD VM +FAAHE+ LLVATTVVEVGV Sbjct: 496 GIDHLTNATDRYESLRERFGERVGLVHGKMKGSEKDDVMNRFAAHELRLLVATTVVEVGV 555 Query: 181 DVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYKEPLGEMSKARLKVIRETT 240 DVPAA+IMVIENAERFGLAQLHQLRGRIGRGSEASTC+LLY EPLG+MSKARL VIRETT Sbjct: 556 DVPAASIMVIENAERFGLAQLHQLRGRIGRGSEASTCILLYHEPLGQMSKARLAVIRETT 615 Query: 241 DGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIARSEVHGQLITQARDEALRIMKDNPKLKG 300 DGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIAR EVH QLITQARDEALRI+KD+PKLKG Sbjct: 616 DGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIARPEVHAQLITQARDEALRILKDDPKLKG 675 Query: 301 ERGEALRVLLYLYERDEAVPLIGAG 325 R +ALR LLYLYERDEA+PL+ AG Sbjct: 676 PRSDALRCLLYLYERDEAIPLLTAG 700 >ref|YP_001240126.1| ATP-dependent DNA helicase RecG [Bradyrhizobium sp. BTAi1] gb|ABQ36220.1| ATP-dependent DNA helicase RecG [Bradyrhizobium sp. BTAi1] Length = 700 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 278/325 (85%), Positives = 306/325 (94%) Query: 1 LVGTHALIQDDVVYKALALAVVDEQHRFGVRERLALTSKGEAVDVLVLSATPIPRTLVLT 60 L+GTHALIQDDV++K+LALA+VDEQHRFGVRERLALTSKGEAVDVLVLSATPIPRTLVLT Sbjct: 376 LIGTHALIQDDVIFKSLALAIVDEQHRFGVRERLALTSKGEAVDVLVLSATPIPRTLVLT 435 Query: 61 YFGDMDVSELREKPAGRQPIDTRAVPMSRIEDVMDGVGRALAAGKLVYWICPLVDESEAE 120 YFGDMD+SELREKPAGRQPIDTR V +R+ +V+D VGRAL AGKLVYWICPLV+ESEAE Sbjct: 436 YFGDMDISELREKPAGRQPIDTRVVADTRLGEVIDAVGRALQAGKLVYWICPLVEESEAE 495 Query: 121 GTEHLTNATERFESLQQRFGDRVGLVHGQMKGTEKDRVMAQFAAHEIGLLVATTVVEVGV 180 G +HLTNAT+R ESL++RFGD+VGLVHG+MKG+EKD VM +FAAHE+ LLVATTVVEVGV Sbjct: 496 GIDHLTNATDRCESLRERFGDKVGLVHGKMKGSEKDEVMGRFAAHELRLLVATTVVEVGV 555 Query: 181 DVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYKEPLGEMSKARLKVIRETT 240 DVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTC+LLY EPLG+MSKARL VIRETT Sbjct: 556 DVPAATIMVIENAERFGLAQLHQLRGRIGRGSEASTCILLYHEPLGQMSKARLAVIRETT 615 Query: 241 DGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIARSEVHGQLITQARDEALRIMKDNPKLKG 300 DGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIAR EVH QLITQARDEALRI+K++PKLKG Sbjct: 616 DGFRIAEEDLKLRGEGDVLGIRQSGLPGYRIARPEVHAQLITQARDEALRILKEDPKLKG 675 Query: 301 ERGEALRVLLYLYERDEAVPLIGAG 325 R +ALR LLYLYERDEA+PL+ AG Sbjct: 676 PRSDALRCLLYLYERDEAIPLLTAG 700