BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0010.p         (215 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001204856.1| hypothetical protein BRADO2809 [Bradyrhizobi...   130   1e-28
ref|NP_771733.1| transcriptional regulator [Bradyrhizobium japon...    40   0.16 
ref|YP_004181328.1| hypothetical protein AciPR4_0499 [Terriglobu...    38   1.0  

>ref|YP_001204856.1| hypothetical protein BRADO2809 [Bradyrhizobium sp. ORS 278]
 emb|CAL76619.1| hypothetical protein BRADO2809 [Bradyrhizobium sp. ORS 278]
          Length = 209

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 104/184 (56%), Gaps = 5/184 (2%)

Query: 28  ARGDETSSINARREALREWSSLA-NGRTDFEISDPALVPRMLALAAEQSGCKYRDDIEKL 86
           ARGD+ +S   + E  R++  +   G+T FEI DP L+PR L  A EQ+GC+Y++D++  
Sbjct: 23  ARGDDEASHIIKLEN-RDFDGINFKGQTGFEIHDPDLLPRQLVRAIEQTGCRYKEDLKSR 81

Query: 87  PVRFMKVAGHRLALMFCRLSVTGSHRAFDLSDVIRPKPMEFPYVALD-GFGTTDTPGFIT 145
           PVRF+ +   + A++ C  ++ G  + FDL+D+ RP+   F   A D GF     PG I 
Sbjct: 82  PVRFLVIERRKFAIVPC-FAMVGREQMFDLADIRRPQLQRFAMAAPDRGFIVAPEPGVIA 140

Query: 146 WREEAGLFQAETGSDLCPSPHLRHVYRLDATSRESFVVVRVEVSAPACGAGQEWTTIWEA 205
           W  E  +F+ E  SDLC  P  R+ YRL         +VR++V   +C    +W T+W+A
Sbjct: 141 WNSEKSVFEVEIRSDLCGDPATRYTYRL-GQYDSGPALVRIDVQKESCRHDDDWATVWDA 199

Query: 206 KPWP 209
             WP
Sbjct: 200 PAWP 203


>ref|NP_771733.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50358.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 296

 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 17/94 (18%)

Query: 2   SARLIAGLIKLLLGGLLTAGPSLVSVARGDETSSINARREAL----REWSSLANGRTDFE 57
           +A L+AG+++  L G   AGP    +A  D T++   R E +    R WSSLA  R    
Sbjct: 128 TADLVAGVLEGTLDGAFVAGP----IAHADLTATSAFREELVLVSARRWSSLAELRAGTP 183

Query: 58  ISDP-ALVPRMLALAAEQSGCKYRDDIEKLPVRF 90
            S P ALV R        +GC YR  +E++ V F
Sbjct: 184 ESGPTALVFR--------TGCTYRQRLEQIFVEF 209


>ref|YP_004181328.1| hypothetical protein AciPR4_0499 [Terriglobus saanensis SP1PR4]
 gb|ADV81334.1| protein of unknown function DUF214 [Terriglobus saanensis SP1PR4]
          Length = 430

 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 81  DDIEKLPVRFM-----KVAGHRLALMFCRLSVTGSHRAFDLSDVIRPKPMEFPYV--ALD 133
           D      VRF+      + G    ++   + +TG   A DL   I P  +E  YV  AL 
Sbjct: 40  DSFRASKVRFLLTMVGMIIGSASIILVVTIGLTGKQYALDLLSSIGPNMVEMQYVGGALS 99

Query: 134 GFGTTDTPGFITWREEAGLFQAETGSDLCPSPHLRH 169
           G   T +P F+T  +EA +  A+       SP L +
Sbjct: 100 GPNNTSSPDFMTKDDEAAV-DAQIAGIKASSPMLEY 134