BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0004.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001990753.1| LysR family transcriptional regulator [Rhodo... 290 9e-77 ref|NP_946908.1| LysR family transcriptional regulator [Rhodopse... 290 1e-76 ref|YP_004354806.1| LysR family transcriptional regulator [Pseud... 240 2e-61 ref|YP_770969.1| LysR family transcriptional regulator [Rhizobiu... 230 2e-58 ref|YP_002278975.1| LysR family transcriptional regulator [Rhizo... 229 3e-58 >ref|YP_001990753.1| LysR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gb|ACF00278.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris TIE-1] Length = 324 Score = 290 bits (743), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 137/229 (59%), Positives = 185/229 (80%), Gaps = 1/229 (0%) Query: 2 FDTINWDDLRVFLCAARAGNLSQTAKRLRLDHSTVSRRIAQMEASLGVAVFERHRTGLKL 61 F++++WDDL+VFL AAR G+L A+RL++D ST+SR+IA +E++LG+A+FER +GL++ Sbjct: 4 FNSLDWDDLKVFLHAARGGSLGSAARRLKVDQSTISRKIAHLESTLGIALFERLPSGLRV 63 Query: 62 NEVGERLLRHAERVESAVIAIREEASASDTQELVGTVRLATMEGIASLYLAQRFAKLRRT 121 E+G+RLL HAER+ESAVIA+RE+ S + G VRLATMEGIASLYLA +F++L R Sbjct: 64 TELGDRLLCHAERIESAVIAMREDVQCSGGRT-AGRVRLATMEGIASLYLAAQFSRLHRQ 122 Query: 122 APQLTVELVTSAQTVYVHKREADLFVSFFRPPGPGLISERIGKFRLGLFASQDYLDHHGM 181 P L VEL+TS Q V V++READLF+SFF+P G G++SERIG F LGL+AS+DY+ +G+ Sbjct: 123 HPNLIVELLTSPQAVSVNRREADLFLSFFQPRGQGMVSERIGCFELGLYASEDYIAQNGL 182 Query: 182 PASLRDLQDHWFVSYIEDLIQVDSVRWLADVIEEPKIAFHSNSMIAQMT 230 P S DL+ H F++YI+DLIQ+DSVRWL DVI+ P ++FHSNSMIAQM Sbjct: 183 PCSSADLKRHRFITYIDDLIQLDSVRWLDDVIKTPVVSFHSNSMIAQMN 231 >ref|NP_946908.1| LysR family transcriptional regulator [Rhodopseudomonas palustris CGA009] emb|CAE27003.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris CGA009] Length = 324 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 137/229 (59%), Positives = 185/229 (80%), Gaps = 1/229 (0%) Query: 2 FDTINWDDLRVFLCAARAGNLSQTAKRLRLDHSTVSRRIAQMEASLGVAVFERHRTGLKL 61 F++++WDDL+VFL AAR G+L A+RL++D ST+SR+IA +E++LG+A+FER +GL++ Sbjct: 4 FNSLDWDDLKVFLHAARGGSLGSAARRLKVDQSTISRKIAHLESTLGIALFERLPSGLRV 63 Query: 62 NEVGERLLRHAERVESAVIAIREEASASDTQELVGTVRLATMEGIASLYLAQRFAKLRRT 121 E+G+RLL HAER+ESAVIA+RE+ S + G VRLATMEGIASLYLA +F++L R Sbjct: 64 TELGDRLLCHAERIESAVIAMREDVQCSGGRT-AGRVRLATMEGIASLYLAAQFSRLHRQ 122 Query: 122 APQLTVELVTSAQTVYVHKREADLFVSFFRPPGPGLISERIGKFRLGLFASQDYLDHHGM 181 P L VEL+TS Q V V++READLF+SFF+P G G++SERIG F LGL+AS+DY+ +G+ Sbjct: 123 HPNLIVELLTSPQAVSVNRREADLFLSFFQPRGQGMVSERIGCFELGLYASEDYIARNGL 182 Query: 182 PASLRDLQDHWFVSYIEDLIQVDSVRWLADVIEEPKIAFHSNSMIAQMT 230 P S DL+ H F++YI+DLIQ+DSVRWL DVI+ P ++FHSNSMIAQM Sbjct: 183 PCSSADLKRHRFITYIDDLIQLDSVRWLDDVIKTPVVSFHSNSMIAQMN 231 >ref|YP_004354806.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69802.1| putative Transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 299 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 116/235 (49%), Positives = 163/235 (69%), Gaps = 2/235 (0%) Query: 3 DTINWDDLRVFLCAARAGNLSQTAKRLRLDHSTVSRRIAQMEASLGVAVFERHRTGLKLN 62 D ++WDDLR+F+ AR NLS+ K+L++D STVSRRI Q+E +LG +VFER +GL+LN Sbjct: 4 DNLSWDDLRIFMHVARCQNLSRAGKQLKIDQSTVSRRINQLEYALGFSVFERSSSGLQLN 63 Query: 63 EVGERLLRHAERVESAVIAIREEASASDTQELVGTVRLATMEGIASLYLAQRFAKLRRTA 122 + G RLL E + + + E+ S S T + G VR+ TMEG+ASLYL Q+ KL+ Sbjct: 64 DQGARLLAQVEVMGNGFSGLLEQLS-SGTNTVSGRVRVGTMEGLASLYLTQQVPKLQLLH 122 Query: 123 PQLTVELVTSAQTVYVHKREADLFVSFFRPPGPGLISERIGKFRLGLFASQDYLDHHGMP 182 P +T+ELVTS + V +READ+F+ FF P G G +ER+G+F L L+ S DYL HG P Sbjct: 123 PNVTLELVTSTHQLQVTRREADIFLGFFEPSGQGFHTERVGQFELNLYGSDDYLLSHGTP 182 Query: 183 ASLRDLQDHWFVSYIEDLIQVDSVRWLADVIEEPKIAFHSNSMIAQMTPRRAASA 237 SL+ L++H FV YIE+L+Q+++V+WL ++I PK+ FHSNSM+AQM A + Sbjct: 183 -SLQTLENHLFVGYIEELVQIEAVKWLDELISTPKLVFHSNSMLAQMFAASAGAG 236 >ref|YP_770969.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] emb|CAK02875.1| putative LysR-family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 306 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 114/228 (50%), Positives = 163/228 (71%), Gaps = 2/228 (0%) Query: 2 FDTINWDDLRVFLCAARAGNLSQTAKRLRLDHSTVSRRIAQMEASLGVAVFERHRTGLKL 61 D ++WDDL++FL R +++ A+ L++ HSTVSRR+A++E ++G A+ ER R GL L Sbjct: 5 IDHLDWDDLKLFLIVVRCKSVTGAARELKVSHSTVSRRLARLEYTVGGALVERTRDGLLL 64 Query: 62 NEVGERLLRHAERVESAVIAIREEASASDTQELVGTVRLATMEGIASLYLAQRFAKLRRT 121 G +R AE +E+ V A+R + S D E+ GTVRLATMEGIA+LYL++R +L Sbjct: 65 TPAGLVTMRRAEEIENGVNALRSDVSNRD--EVRGTVRLATMEGIATLYLSERLVELSSR 122 Query: 122 APQLTVELVTSAQTVYVHKREADLFVSFFRPPGPGLISERIGKFRLGLFASQDYLDHHGM 181 P L +ELVTS QTV V +READLF+SFF+P G L S+ IG+F+ GLFASQ YL+ +G+ Sbjct: 123 YPDLDIELVTSPQTVRVARREADLFLSFFKPHGTALDSQLIGRFKTGLFASQAYLERNGV 182 Query: 182 PASLRDLQDHWFVSYIEDLIQVDSVRWLADVIEEPKIAFHSNSMIAQM 229 P+ DL++H FV YIE+L+ ++SV WL +++ P +AF SNSM++QM Sbjct: 183 PSQAADLREHRFVGYIEELVLLESVLWLEELVPAPTMAFSSNSMMSQM 230 >ref|YP_002278975.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI58235.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 306 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 113/228 (49%), Positives = 162/228 (71%), Gaps = 2/228 (0%) Query: 2 FDTINWDDLRVFLCAARAGNLSQTAKRLRLDHSTVSRRIAQMEASLGVAVFERHRTGLKL 61 D ++WDDL++FL R +++ A+ L++ HSTVSRR+A++E ++G A+ ER + GL L Sbjct: 5 IDHLDWDDLKLFLIVVRCKSVTGAARELKVSHSTVSRRLARLEYTVGGALVERTKDGLLL 64 Query: 62 NEVGERLLRHAERVESAVIAIREEASASDTQELVGTVRLATMEGIASLYLAQRFAKLRRT 121 G +R AE +E+ V A+R + S D E+ GTVRLATMEGIA+LYL++R +L Sbjct: 65 TPAGLVTMRRAEEIENGVNALRSDVSNRD--EIRGTVRLATMEGIATLYLSERLVELSDR 122 Query: 122 APQLTVELVTSAQTVYVHKREADLFVSFFRPPGPGLISERIGKFRLGLFASQDYLDHHGM 181 P L +ELVTS Q++ V +READLF+SFF+P G L S+ IG+F+ GLFAS+ YLD +G+ Sbjct: 123 YPDLDLELVTSPQSIRVARREADLFLSFFKPHGTSLDSQLIGRFKTGLFASRTYLDRNGV 182 Query: 182 PASLRDLQDHWFVSYIEDLIQVDSVRWLADVIEEPKIAFHSNSMIAQM 229 P+ +L DH FV YI +L+Q++SV WL +++ PKI F SNSMI+QM Sbjct: 183 PSDAANLSDHRFVGYIGELVQLESVLWLEELVPAPKIVFSSNSMISQM 230