BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0002.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001924262.1| hypothetical protein Mpop_1561 [Methylobacte...   108   4e-22
ref|YP_002420127.1| hypothetical protein Mchl_1315 [Methylobacte...   107   5e-22
ref|YP_001638629.1| hypothetical protein Mext_1156 [Methylobacte...   105   2e-21
ref|YP_003067302.1| hypothetical protein METDI1729 [Methylobacte...    98   5e-19
ref|YP_002962106.1| hypothetical protein MexAM1_META1p0928 [meth...    97   7e-19

>ref|YP_001924262.1| hypothetical protein Mpop_1561 [Methylobacterium populi BJ001]
 gb|ACB79727.1| protein of unknown function DUF485 [Methylobacterium populi BJ001]
          Length = 98

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 65/83 (78%)

Query: 21  KAAEQLARKRLTVALVLSVAMIAIYFGFMGLFAFDKPLLGTILMPGLSLCIVLGPLVIIS 80
           +A  +L+R R  VA+ LS+ MIA+YFGFM +FAF KP +GTIL PGLSLCI+LG  VI+ 
Sbjct: 14  EAIARLSRTRARVAVALSLVMIAMYFGFMTMFAFAKPTMGTILAPGLSLCILLGAGVIVG 73

Query: 81  SFVLCLVYVLWANRVFDAGVREL 103
           SFVLCLVYV+WANR +D  VR L
Sbjct: 74  SFVLCLVYVVWANRFYDPAVRRL 96


>ref|YP_002420127.1| hypothetical protein Mchl_1315 [Methylobacterium chloromethanicum
           CM4]
 gb|ACK82199.1| protein of unknown function DUF485 [Methylobacterium
           chloromethanicum CM4]
          Length = 98

 Score =  107 bits (268), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 68/98 (69%), Gaps = 5/98 (5%)

Query: 6   PGNADPAPSGGALAKKAAEQLARKRLTVALVLSVAMIAIYFGFMGLFAFDKPLLGTILMP 65
           P    P     A+A+     L+R R  VA+VLS+ MI +YFGFM +FAF K  +GTILMP
Sbjct: 4   PDRVAPREEAEAIAR-----LSRTRSRVAIVLSLVMITMYFGFMTMFAFAKTAMGTILMP 58

Query: 66  GLSLCIVLGPLVIISSFVLCLVYVLWANRVFDAGVREL 103
           GLSLCI+LG  VI+ SFVLCLVYV+WANR +D  VR +
Sbjct: 59  GLSLCILLGAGVIVGSFVLCLVYVVWANRFYDPAVRRI 96


>ref|YP_001638629.1| hypothetical protein Mext_1156 [Methylobacterium extorquens PA1]
 gb|ABY29558.1| protein of unknown function DUF485 [Methylobacterium extorquens
           PA1]
          Length = 98

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 67/98 (68%), Gaps = 5/98 (5%)

Query: 6   PGNADPAPSGGALAKKAAEQLARKRLTVALVLSVAMIAIYFGFMGLFAFDKPLLGTILMP 65
           P    P     A+A+     L+R R  VA+VLS+ MI +YFGFM +FAF K  +GTILMP
Sbjct: 4   PDRVAPREEAEAIAR-----LSRTRSRVAIVLSLVMITMYFGFMTMFAFAKTAMGTILMP 58

Query: 66  GLSLCIVLGPLVIISSFVLCLVYVLWANRVFDAGVREL 103
           GLSLCI+LG  VI+ SF LCLVYV+WANR +D  VR +
Sbjct: 59  GLSLCILLGAGVIVGSFALCLVYVVWANRFYDPAVRRI 96


>ref|YP_003067302.1| hypothetical protein METDI1729 [Methylobacterium extorquens DM4]
 emb|CAX23326.1| conserved hypothetical protein, DUF485; putative membrane protein
           precursor [Methylobacterium extorquens DM4]
          Length = 73

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 58/71 (81%)

Query: 33  VALVLSVAMIAIYFGFMGLFAFDKPLLGTILMPGLSLCIVLGPLVIISSFVLCLVYVLWA 92
           +A+VLS+ MI +YFGFM +FAF K  +GTILMPGLSLCI+LG  VI+ SFVLCLVYV+WA
Sbjct: 1   MAIVLSLVMITMYFGFMTMFAFAKTTMGTILMPGLSLCILLGAGVIVGSFVLCLVYVVWA 60

Query: 93  NRVFDAGVREL 103
           NR +D  VR +
Sbjct: 61  NRFYDPAVRRI 71


>ref|YP_002962106.1| hypothetical protein MexAM1_META1p0928 [methylobacterium extorquens
           AM1]
 gb|ACS38829.1| conserved hypothetical protein, DUF485; putative membrane protein
           precursor [Methylobacterium extorquens AM1]
          Length = 73

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 58/71 (81%)

Query: 33  VALVLSVAMIAIYFGFMGLFAFDKPLLGTILMPGLSLCIVLGPLVIISSFVLCLVYVLWA 92
           +A+VLS+ MI +YFGFM +FAF K  +GTILMPGLSLCI+LG  VI+ SFVLCLVYV+WA
Sbjct: 1   MAIVLSLVMITMYFGFMTMFAFAKTAMGTILMPGLSLCILLGAGVIVGSFVLCLVYVVWA 60

Query: 93  NRVFDAGVREL 103
           NR +D  VR +
Sbjct: 61  NRFYDPAVRRI 71