BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0011.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_578205.1| AraC family transcriptional regulator [Nitrobac... 449 e-124 ref|YP_001682722.1| AraC family transcriptional regulator [Caulo... 137 2e-30 ref|ZP_03573414.1| transcriptional regulator, AraC family [Burkh... 97 3e-18 ref|YP_001415507.1| helix-turn-helix domain-containing protein [... 96 1e-17 ref|ZP_03582386.1| transcriptional regulator, AraC family [Burkh... 95 2e-17 >ref|YP_578205.1| AraC family transcriptional regulator [Nitrobacter hamburgensis X14] gb|ABE63745.1| transcriptional regulator, AraC family [Nitrobacter hamburgensis X14] Length = 367 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/317 (67%), Positives = 262/317 (82%), Gaps = 1/317 (0%) Query: 1 MGQHLTVSTGELDGFEGLHDAVKGSHVEVMQLERGKLRGTLSHVGIGDFSLSIGAFNVGV 60 M Q L VS+ L+GFEGLH AV+GSH++VMQL GK+RGTLSHVGIG+FSLS+G+FN+GV Sbjct: 1 MVQRLWVSSCGLNGFEGLHQAVQGSHIDVMQLGHGKMRGTLSHVGIGEFSLSVGSFNLGV 60 Query: 61 RTQRISTDPKLIIGMLLNATDRVTHWAFDMQPADVLVIPPSVEHDGVFHSASSYAAIRFD 120 RTQR S+D KLI+GMLL+A DRVTH+AFDM+PADVLVIPP++EHDG+FH ASSYAA+RFD Sbjct: 61 RTQRTSSDEKLIVGMLLSAKDRVTHFAFDMRPADVLVIPPAIEHDGIFHGASSYAALRFD 120 Query: 121 LADLPDIFGGEPRLADAETWQAKNHFRADPAIGMGAADKLPRIVAHLARYPDALTDASAD 180 L+D+ +F GE RL+D TW KN +RA+ + A +LP+IV+ LA++ DALT+ASAD Sbjct: 121 LSDVVSMFAGEARLSDPATWYEKNRYRANQSAQTATA-RLPQIVSRLAQHQDALTEASAD 179 Query: 181 FWKRAIIDCVTATVVTSLPPDGTSYLPSAMRLVRHVEDYLHAAGTRPVHVSEICTELRLS 240 FWKRAI+DC TAT+ SLPPD T LPSA+RLV +VEDYL AA RPVHVSE+C R+S Sbjct: 180 FWKRAIVDCFTATIFQSLPPDETRTLPSALRLVHNVEDYLAAADARPVHVSELCAAFRVS 239 Query: 241 RRSLHRAFHEVFGVGPVTFLRYKRLCMIRSILRESTPDQTTVSKVAIEQGFIELGRFSQY 300 RR LHRAFH+VFGVGPVTFLR+KRLC I S L +S+P TTV+KVA++QGF+ELGRFS Y Sbjct: 240 RRGLHRAFHDVFGVGPVTFLRHKRLCAIHSALIDSSPGDTTVAKVALQQGFVELGRFSHY 299 Query: 301 YRAMFGEYPSQTLGYAG 317 Y A+FGEYPS+TL G Sbjct: 300 YHALFGEYPSETLELRG 316 >ref|YP_001682722.1| AraC family transcriptional regulator [Caulobacter sp. K31] gb|ABZ70224.1| transcriptional regulator, AraC family [Caulobacter sp. K31] Length = 374 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 96/304 (31%), Positives = 140/304 (46%), Gaps = 7/304 (2%) Query: 16 EGLHDA---VKGSHVEVMQLERGKLRGTLSHVGIGDFSLSIGAFNVGVRTQRISTDPKLI 72 EG H+ G ++ V QL RG L G+GD GAF+ +R + + Sbjct: 63 EGPHEVWAHAAGRNLAVTQLTPDPCRGHLLRAGLGDMGFDAGAFSGDLRVRGVMARKAFS 122 Query: 73 IGMLLNATDRVTHWAFDMQPADVLVIPPSVEHDGVFHSASSYAAIRFDLADLPDIFGGEP 132 +L + W ++ D+L IPP E DG F ++YA + + Sbjct: 123 FVSVLEQDGVLNQWGHRIEEGDILAIPPGDELDGRFQGHTAYAVVTAPWGLVMQRAEAFE 182 Query: 133 RLADAETWQAKNHFRADPAIGMGAADKLPRIVAHLARYPDALTDASADFWKRAIIDCVTA 192 LAD W + P L L A ++ F + I+D V Sbjct: 183 WLADPGFWTEAAVYSPPPEARAACRRVLQGCSGVLRAMGAAPPPSAVSFLRHEILDGVL- 241 Query: 193 TVVTSLPPDGTSY--LPSAMRLVRHVEDYLHAAGTR-PVHVSEICTELRLSRRSLHRAFH 249 T ++ + +G L +A R+VR ED+L G R V + +IC L +SRR+L+RAFH Sbjct: 242 TALSQVKVEGGRRHGLLNAARIVRGAEDFLDGGGARQAVQIEDICRALNISRRTLYRAFH 301 Query: 250 EVFGVGPVTFLRYKRLCMIRSILRESTPDQTTVSKVAIEQGFIELGRFSQYYRAMFGEYP 309 + V P +LR K + R+ + TTV++VA++ GF ELGRFS YRAMFGE P Sbjct: 302 DQLDVSPKAYLRLKNMSAARARFLGAGVRPTTVTQVALDHGFWELGRFSGAYRAMFGESP 361 Query: 310 SQTL 313 S+TL Sbjct: 362 SETL 365 >ref|ZP_03573414.1| transcriptional regulator, AraC family [Burkholderia multivorans CGD2M] ref|ZP_03579066.1| transcriptional regulator, AraC family [Burkholderia multivorans CGD2] gb|EEE06497.1| transcriptional regulator, AraC family [Burkholderia multivorans CGD2] gb|EEE12118.1| transcriptional regulator, AraC family [Burkholderia multivorans CGD2M] Length = 319 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 2/164 (1%) Query: 151 AIGMGAADKLPRIVAHLARYPDALTDASADFWKRAIIDCVTATVVTSLPPDGTSYLPSAM 210 A M A +L ++ PDAL DA R + V ++T PD +S L A Sbjct: 145 AARMRAGVQLATLLERALAAPDALRDARVQCELRGEVGNVLVDLLTYWMPDASSGLTQAC 204 Query: 211 R--LVRHVEDYLHAAGTRPVHVSEICTELRLSRRSLHRAFHEVFGVGPVTFLRYKRLCMI 268 R +VR V DY+ A PV + +C +LR+SRR++ +F V P+ ++R RL + Sbjct: 205 RADIVRRVHDYVIAHPEAPVDILSLCAQLRVSRRTMQNSFQSVVQTSPLNYVRSLRLAQV 264 Query: 269 RSILRESTPDQTTVSKVAIEQGFIELGRFSQYYRAMFGEYPSQT 312 R +L ++ +++ A GFI LG F+ Y+A FGE PS T Sbjct: 265 RRMLLDTRQSDLSIADAAAHWGFIHLGHFANAYKAQFGELPSTT 308 >ref|YP_001415507.1| helix-turn-helix domain-containing protein [Xanthobacter autotrophicus Py2] gb|ABS65850.1| helix-turn-helix- domain containing protein AraC type [Xanthobacter autotrophicus Py2] Length = 326 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 89/325 (27%), Positives = 134/325 (41%), Gaps = 50/325 (15%) Query: 12 LDGFEGLHDAVKGSHVEVMQLERGKLRGTLSHVGIGDFSLSIGAFNVGVRTQRISTDPKL 71 L G E L +AV G+ + +QL + +L+ + G + V ++ + Sbjct: 14 LSGIENLSEAVHGAGLNAVQLSATPVTASLAFTERRSIRFTTGIIDNQVSLSGPLSEDMI 73 Query: 72 IIGMLLNATDRVTHWAFDMQPADVLVIPPSVEHDGVFHSASSYAAIRF------------ 119 +G+ ++ HW D+ +V V P EHD ++ S YA + Sbjct: 74 TLGLGIDLPPGTRHWLNDVTSGNVGVFMPGDEHDALYAPGSLYAVLSLSGDVLEEEAAQR 133 Query: 120 DLADLPDIFGGE----PRLADAETWQAKNHFRADPA-IGMGAADK-------LPRIVAHL 167 +L P GG RLA ++ KN F++ A +G GA + L +V H+ Sbjct: 134 ELVLTPKELGGSGIHGQRLAASQLALIKNLFQSIHAPLGDGAVSRMDPAAYFLNALVEHV 193 Query: 168 ARYPDALTDASADFWKRAIIDCVTATVVTSLPPDGTSYLPSAMRLVRHVEDYLHAAGTRP 227 R P RA I L P G R+VR ++H P Sbjct: 194 GRPP------------RASIGV--------LDPRGHE------RIVRRARAFIHENLGSP 227 Query: 228 VHVSEICTELRLSRRSLHRAFHEVFGVGPVTFLRYKRLCMIRSILRESTPDQTTVSKVAI 287 + V I T S R+LHRAF + P +++ RL IR + T TT++ +A Sbjct: 228 LSVERIATAAATSPRTLHRAFQMLLDETPYSYVLKLRLHRIRYDVISDTERTTTLATIAN 287 Query: 288 EQGFIELGRFSQYYRAMFGEYPSQT 312 G ELGR S +YR +FGE PSQT Sbjct: 288 HWGISELGRLSGWYRELFGELPSQT 312 >ref|ZP_03582386.1| transcriptional regulator, AraC family [Burkholderia multivorans CGD1] gb|EEE02559.1| transcriptional regulator, AraC family [Burkholderia multivorans CGD1] Length = 319 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 2/164 (1%) Query: 151 AIGMGAADKLPRIVAHLARYPDALTDASADFWKRAIIDCVTATVVTSLPPDGTSYLPSAM 210 A M A +L ++ P+AL DA R + V ++T PD +S L A Sbjct: 145 AARMRAGVQLATLLERALAAPEALRDARVQCELRGEVGNVLVDLLTYWMPDASSGLTQAC 204 Query: 211 R--LVRHVEDYLHAAGTRPVHVSEICTELRLSRRSLHRAFHEVFGVGPVTFLRYKRLCMI 268 R +VR V DY+ A PV + +C LR+SRR++ +F V P+ ++R RL + Sbjct: 205 RADIVRRVHDYVIAHPEAPVDILSLCAHLRVSRRTMQNSFQSVVQTSPLNYVRSLRLAQV 264 Query: 269 RSILRESTPDQTTVSKVAIEQGFIELGRFSQYYRAMFGEYPSQT 312 R +L ++ +++ A GFI LG F+ Y+A FGE PS T Sbjct: 265 RRMLLDTRQSDLSIADAAAHWGFIHLGHFANAYKAQFGELPSTT 308