BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0003.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207952.1| putative S-adenosyl-L-methionine (SAM)-depen... 222 4e-56 ref|ZP_01856306.1| SAM (and some other nucleotide) binding motif... 131 9e-29 ref|YP_001414571.1| SAM-binding motif-containing protein [Parvib... 122 8e-26 ref|YP_972717.1| SAM-binding motif-containing protein [Acidovora... 120 2e-25 ref|YP_004352785.1| SAM-binding motif-containing protein [Pseudo... 119 5e-25 >ref|YP_001207952.1| putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase [Bradyrhizobium sp. ORS 278] emb|CAL79737.1| putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase [Bradyrhizobium sp. ORS 278] Length = 232 Score = 222 bits (566), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 113/178 (63%), Positives = 134/178 (75%), Gaps = 1/178 (0%) Query: 8 AGFGAEGDRARFSVLYADVESYYSARVAKYGATPRGVDWSCQATQDLRFVQLLKLCDFSA 67 AG E DR+ + +DV++YY+A V+++GATPRGVDWSC+ATQ LRFVQL+KLCD SA Sbjct: 5 AGGDNERDRSSLDAICSDVDAYYTACVSRHGATPRGVDWSCEATQGLRFVQLMKLCDASA 64 Query: 68 PFSLNDIGCGYGALCAYFARRHPQAEIDYLGIDLSRAMISRARRRFSAPGRRFKVGKGSP 127 PFSLNDIGCGYGAL + A R EIDYLGIDLSRAMISRARRR++ P RRF VG SP Sbjct: 65 PFSLNDIGCGYGALVPFLATRFAANEIDYLGIDLSRAMISRARRRYAGPQRRFAVGAASP 124 Query: 128 RRATYSVASGIMNVDVGGCRRSWEAFVAGMLADLRRASLRGFSVNFVTG-EADPTAAP 184 R A YSVASGIMNV+VG R +WE +V MLA + S RGF+VNFV+ E P + P Sbjct: 125 RIADYSVASGIMNVNVGHAREAWEDYVRAMLARMDATSRRGFAVNFVSAIEEAPDSDP 182 >ref|ZP_01856306.1| SAM (and some other nucleotide) binding motif [Planctomyces maris DSM 8797] gb|EDL57885.1| SAM (and some other nucleotide) binding motif [Planctomyces maris DSM 8797] Length = 208 Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 70/200 (35%), Positives = 102/200 (51%), Gaps = 8/200 (4%) Query: 18 RFSVLYADVESYYSARVAKYGATPRGVDWSCQATQDLRFVQLLKLCDFSAPFSLNDIGCG 77 F + A VE YYS ++ +G +P+GVDW+ Q +Q LRF QLLK+C+ + FS+ND GCG Sbjct: 2 NFKNITASVEQYYSQKIKTHGISPQGVDWNSQESQFLRFDQLLKICNHHSQFSINDFGCG 61 Query: 78 YGALCAYFARRHPQAEIDYLGIDLSRAMISRARRRFSAPGRRFKVGKGSPR--RATYSVA 135 YGAL Y ++ + Y G D+S M+++AR +F + + Y+VA Sbjct: 62 YGALAEYLINQNYSFQ--YYGYDISDLMLNQARNKFGIVNNHISFTDQISKVPESDYTVA 119 Query: 136 SGIMNVDVGGCRRSWEAFVAGMLADLRRASLRGFSVNFVTGEADPTAAPP---XGAPALL 192 SGI NV WE+++ L D+ S GF+ N +T +D P G P L Sbjct: 120 SGIFNVKQDTSTSDWESYLLATLEDISNLSRLGFAFNILTKYSDEEKMRPDLYYGDPCFL 179 Query: 193 HEARAVDPVLRTRAGLHRRD 212 + + R A LH D Sbjct: 180 FDYCKTN-FSRNVAILHDYD 198 >ref|YP_001414571.1| SAM-binding motif-containing protein [Parvibaculum lavamentivorans DS-1] gb|ABS64914.1| SAM (and some other nucleotide) binding motif [Parvibaculum lavamentivorans DS-1] Length = 215 Score = 122 bits (305), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 95/167 (56%), Gaps = 3/167 (1%) Query: 20 SVLYADVESYYSARVAKYGATPRGVDWSCQATQDLRFVQLLKLCDFSAPFSLNDIGCGYG 79 + + A+V YYS ++A++G TP+GVDW+ +A Q LRF QL K+ FS+ND+G GYG Sbjct: 11 TTILAEVADYYSGKLAEHGETPQGVDWNGEAGQVLRFEQLSKVVASGPAFSVNDLGAGYG 70 Query: 80 ALCAYFARRHPQAEIDYLGIDLSRAMISRARRRF-SAPGRRFKVGKGSPRRATYSVASGI 138 AL +Y R+ A++ Y G D+S +M+ ARR+F A F V A Y +ASGI Sbjct: 71 ALFSYLDTRY--ADVSYFGYDVSESMVMAARRQFGHARNATFSVSSTPQTSADYGMASGI 128 Query: 139 MNVDVGGCRRSWEAFVAGMLADLRRASLRGFSVNFVTGEADPTAAPP 185 NV +G W +++ L L R S GFS N +T +D P Sbjct: 129 FNVRLGRADAEWRSYIEQTLDQLHRTSRLGFSFNCLTSYSDKDKMRP 175 >ref|YP_972717.1| SAM-binding motif-containing protein [Acidovorax citrulli AAC00-1] gb|ABM34943.1| SAM (and some other nucleotide) binding motif protein [Acidovorax citrulli AAC00-1] Length = 218 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/173 (40%), Positives = 94/173 (54%), Gaps = 9/173 (5%) Query: 20 SVLYADVESYYSARVAKYGATPRGVDWSCQATQDLRFVQLLKLC------DFSAPFSLND 73 + L+ + YY R+ ++G TPRGVDW+ +Q LRF QL ++ D P +LND Sbjct: 6 NALHEGIALYYERRLHEHGPTPRGVDWNGAESQQLRFAQLTQILQAGPGPDSDRPTTLND 65 Query: 74 IGCGYGALCAYFARRHPQAEIDYLGIDLSRAMISRARRRFSAPGR-RFKVGKGSPRRATY 132 +GCGYGAL + IDY GIDLS +M+ A+ R + RF+VG R A Y Sbjct: 66 LGCGYGALLDFLVE--TGWNIDYEGIDLSASMVQAAQARHAGVANARFRVGAACTRMADY 123 Query: 133 SVASGIMNVDVGGCRRSWEAFVAGMLADLRRASLRGFSVNFVTGEADPTAAPP 185 SVASG+ NV WE F+ L DL R+S RGF+ N +T +D P Sbjct: 124 SVASGLFNVRQEVPVPLWEKFIHDTLDDLDRSSRRGFAFNCLTSYSDAEKMKP 176 >ref|YP_004352785.1| SAM-binding motif-containing protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA67781.1| Putative SAM-binding motif-containing protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 210 Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/161 (41%), Positives = 90/161 (55%), Gaps = 5/161 (3%) Query: 22 LYADVESYYSARVAKYGATPRGVDWSCQATQDLRFVQLLKLCDFSAPFSLNDIGCGYGAL 81 L +V SYYS ++A +G TP GVDW+ + Q +RF QL K+ + FS+ND+GCGYGAL Sbjct: 8 LLEEVASYYSQKLALHGETPNGVDWNGEHGQAMRFEQLCKIINAPQAFSINDLGCGYGAL 67 Query: 82 CAYF-ARRHPQAEIDYLGIDLSRAMISRARRRFSAPGR-RFKVGKGSPRRATYSVASGIM 139 Y A H YLG+D+S+ MI A+ R+ + RF A YSVASGI Sbjct: 68 VDYLKANNHT---FSYLGVDISKEMIQAAKNRYVKDSQARFIESSEPDAVADYSVASGIF 124 Query: 140 NVDVGGCRRSWEAFVAGMLADLRRASLRGFSVNFVTGEADP 180 NV +G W A++ L L R S GF+ N +T +D Sbjct: 125 NVRLGRSDSEWLAYLENTLNILDRTSRLGFAFNCLTSYSDE 165