BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0064.p         (55 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08630860.1| high-affinity branched-chain amino acid trans...    53   1e-05
ref|NP_774572.1| ABC transporter permease protein [Bradyrhizobiu...    53   1e-05
ref|NP_946581.1| putative ABC transporter permease [Rhodopseudom...    44   0.006
ref|YP_002429248.1| inner-membrane translocator [Desulfatibacill...    35   5.4  

>ref|ZP_08630860.1| high-affinity branched-chain amino acid transport system permease
           [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP06392.1| high-affinity branched-chain amino acid transport system permease
           [Bradyrhizobiaceae bacterium SG-6C]
          Length = 291

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/26 (100%), Positives = 26/26 (100%)

Query: 8   SIVWAISAAVATCAGVLLAPITFIHS 33
           SIVWAISAAVATCAGVLLAPITFIHS
Sbjct: 190 SIVWAISAAVATCAGVLLAPITFIHS 215


>ref|NP_774572.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC53197.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
          Length = 291

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/26 (100%), Positives = 26/26 (100%)

Query: 8   SIVWAISAAVATCAGVLLAPITFIHS 33
           SIVWAISAAVATCAGVLLAPITFIHS
Sbjct: 190 SIVWAISAAVATCAGVLLAPITFIHS 215


>ref|NP_946581.1| putative ABC transporter permease [Rhodopseudomonas palustris
           CGA009]
 ref|YP_001990438.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1]
 emb|CAE26673.1| putative ABC transporter, permease protein [Rhodopseudomonas
           palustris CGA009]
 gb|ACE99962.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1]
          Length = 290

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/26 (73%), Positives = 24/26 (92%)

Query: 8   SIVWAISAAVATCAGVLLAPITFIHS 33
           S++W++SA VA CAGVLLAPITFIH+
Sbjct: 190 SLIWSLSAIVACCAGVLLAPITFIHA 215


>ref|YP_002429248.1| inner-membrane translocator [Desulfatibacillum alkenivorans AK-01]
 gb|ACL01780.1| inner-membrane translocator [Desulfatibacillum alkenivorans AK-01]
          Length = 295

 Score = 34.7 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 19/25 (76%)

Query: 8   SIVWAISAAVATCAGVLLAPITFIH 32
           S+ W I+AA+    G+LLAPITF+H
Sbjct: 195 SLTWTIAAALGGIGGILLAPITFVH 219