BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0063.p (383 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774571.1| ABC transporter permease protein [Bradyrhizobiu... 682 0.0 ref|ZP_08630859.1| ABC transporter permease protein [Bradyrhizob... 639 0.0 ref|NP_946582.1| ABC transporter permease [Rhodopseudomonas palu... 414 e-114 ref|YP_001990439.1| inner-membrane translocator [Rhodopseudomona... 401 e-109 ref|YP_524736.1| inner-membrane translocator [Rhodoferax ferrire... 385 e-105 >ref|NP_774571.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53196.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 383 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/383 (91%), Positives = 366/383 (95%) Query: 1 MRFLFKTDYEDDIKLFPHSGYIYSYGLLLAVLLIAPYVLSSYLMSQLVFVCIYATVGVGL 60 MRFLFKTDYEDDIKLFPHSGY SYG+LLA+LL+APYVLSSYLMSQLVFVCIYATVGV L Sbjct: 1 MRFLFKTDYEDDIKLFPHSGYFVSYGILLALLLVAPYVLSSYLMSQLVFVCIYATVGVAL 60 Query: 61 LILTGFTGQASLGHAAFLAIGAYTAAYLQQFNVPFPVYFLAAGLLTGVVGALVGFPALRL 120 LILTGFTGQASLGHAAFLAIGAYTAAYLQ++NVPFPVYFLAAGLLTG++GA+VGFPALRL Sbjct: 61 LILTGFTGQASLGHAAFLAIGAYTAAYLQKYNVPFPVYFLAAGLLTGIIGAMVGFPALRL 120 Query: 121 QGIYLVIATISFAFIVEEILARWESVTNGNEGMRVKTMQLLGTTVSRDGPTFYYLCLAVL 180 QGIYLVIATISFA IVEEILARWESVTNGNEGMRVKT+ LLG V RD PTFY+LCLAVL Sbjct: 121 QGIYLVIATISFALIVEEILARWESVTNGNEGMRVKTLSLLGVAVPRDSPTFYFLCLAVL 180 Query: 181 VLTIVGTLNLLRSPTGRAFVAIRDSETAARSMGINVALYKVKSFAISAAITGFAGVLFAH 240 VLTIVGTLNLLRSPTGRAFVAIRDSETAARSMG+NVALYKVKSFAISAAITGFAGVLFAH Sbjct: 181 VLTIVGTLNLLRSPTGRAFVAIRDSETAARSMGVNVALYKVKSFAISAAITGFAGVLFAH 240 Query: 241 KLSFISPEMFTLQLSIEFIIVILIGGTFSLHGAVLGAIFLVMIDPFLTYLKDDMPGVIGG 300 KLSFISPEMFTLQLSIEFIIVILIGG+FSLHGAVLGAIF+VMIDPFLTYLKDDMPG+I G Sbjct: 241 KLSFISPEMFTLQLSIEFIIVILIGGSFSLHGAVLGAIFIVMIDPFLTYLKDDMPGIIAG 300 Query: 301 IAATLGAGTERAGHIQDAVAAFASANGLKGAIYGIIIVLFVLFEPLGLYGRWLKIKLFFQ 360 IAA GAGT+ A ++Q VAAFAS NGLKGAIYGIIIVLFVLFEPLGLYGRWLKIKLFFQ Sbjct: 301 IAAAFGAGTQGAANVQSKVAAFASLNGLKGAIYGIIIVLFVLFEPLGLYGRWLKIKLFFQ 360 Query: 361 LFPLYKRATFKRQKIYVKSERNR 383 LFPLYKRATFKRQKIYVKSERNR Sbjct: 361 LFPLYKRATFKRQKIYVKSERNR 383 >ref|ZP_08630859.1| ABC transporter permease protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06391.1| ABC transporter permease protein [Bradyrhizobiaceae bacterium SG-6C] Length = 383 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/383 (83%), Positives = 357/383 (93%) Query: 1 MRFLFKTDYEDDIKLFPHSGYIYSYGLLLAVLLIAPYVLSSYLMSQLVFVCIYATVGVGL 60 MRFLFKTDY DDI+L PHSGY++SYG LL +L+IAP+ LSSYLMSQLVFVCIYATVGVGL Sbjct: 1 MRFLFKTDYNDDIRLIPHSGYLWSYGALLILLVIAPFTLSSYLMSQLVFVCIYATVGVGL 60 Query: 61 LILTGFTGQASLGHAAFLAIGAYTAAYLQQFNVPFPVYFLAAGLLTGVVGALVGFPALRL 120 +ILTGFTGQASLGHAAFLAIGAYTA YL Q VPFPVYFLA+G+LTG++GA+VGFPALRL Sbjct: 61 MILTGFTGQASLGHAAFLAIGAYTAGYLHQLGVPFPVYFLASGILTGIIGAMVGFPALRL 120 Query: 121 QGIYLVIATISFAFIVEEILARWESVTNGNEGMRVKTMQLLGTTVSRDGPTFYYLCLAVL 180 QGIYLVIATISFA IVEE+LARWESVT+GN+GMRVKT++LLG+TV RD PTFYYLCL +L Sbjct: 121 QGIYLVIATISFALIVEEVLARWESVTHGNDGMRVKTIELLGSTVPRDSPTFYYLCLGLL 180 Query: 181 VLTIVGTLNLLRSPTGRAFVAIRDSETAARSMGINVALYKVKSFAISAAITGFAGVLFAH 240 +L IVGTLNL+RSPTGRAFVAIRDSETAA+SMGINVA YKVKSFA+SAAITGFAG LFAH Sbjct: 181 ILVIVGTLNLMRSPTGRAFVAIRDSETAAKSMGINVARYKVKSFALSAAITGFAGCLFAH 240 Query: 241 KLSFISPEMFTLQLSIEFIIVILIGGTFSLHGAVLGAIFLVMIDPFLTYLKDDMPGVIGG 300 K+SFISPEMFTLQLSIEFI+VI+IGG SLHGAVLGAIF+VM+DPFLT+LKDD+PG+I G Sbjct: 241 KMSFISPEMFTLQLSIEFIMVIIIGGVLSLHGAVLGAIFIVMVDPFLTFLKDDIPGLIAG 300 Query: 301 IAATLGAGTERAGHIQDAVAAFASANGLKGAIYGIIIVLFVLFEPLGLYGRWLKIKLFFQ 360 +AAT GAG E+A HI+ +AA ASANGLKGAIYG+II+LF+LFEP G+YGRWLKIKLFFQ Sbjct: 301 LAATFGAGAEQAAHIKANIAAIASANGLKGAIYGLIIMLFILFEPYGIYGRWLKIKLFFQ 360 Query: 361 LFPLYKRATFKRQKIYVKSERNR 383 LFPLYKRATFKRQKIYVKSERNR Sbjct: 361 LFPLYKRATFKRQKIYVKSERNR 383 >ref|NP_946582.1| ABC transporter permease [Rhodopseudomonas palustris CGA009] emb|CAE26674.1| possible ABC transporter, permease protein [Rhodopseudomonas palustris CGA009] Length = 381 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 212/378 (56%), Positives = 280/378 (74%), Gaps = 2/378 (0%) Query: 6 KTDYEDDIKLFPHSGYIYSYGLLLAVLLIAPYVLSSYLMSQLVFVCIYATVGVGLLILTG 65 +T Y +LFP + Y +L+A L++APYVL SY +SQLVFV IYA VG+ + +L+G Sbjct: 6 RTSYAQSEQLFPSKNAAFWYAVLVAALIVAPYVLESYYLSQLVFVLIYAIVGIAMNVLSG 65 Query: 66 FTGQASLGHAAFLAIGAYTAAYLQQFNVPFPVYFLAAGLLTGVVGALVGFPALRLQGIYL 125 GQ S+GHAAF+AIGAY+AA +++ +P PVY + AG TG++G LVG PALRL GIYL Sbjct: 66 QAGQVSIGHAAFMAIGAYSAAVAEKYGLPLPVYLVLAGGFTGLIGYLVGLPALRLHGIYL 125 Query: 126 VIATISFAFIVEEILARWESVTNGNEGMRVKTMQLLGTTVSRDGPTFYYLCLAVLVLTIV 185 IAT++FAFIVEEI+ RWESVTNGNEG+ + L G + G FYYLCL V V+ I+ Sbjct: 126 AIATLAFAFIVEEIVTRWESVTNGNEGLMLGAPSLFGLKLGAQG--FYYLCLGVTVVVIL 183 Query: 186 GTLNLLRSPTGRAFVAIRDSETAARSMGINVALYKVKSFAISAAITGFAGVLFAHKLSFI 245 +N+LRSPTGRAF+AIRDSETAARSMGI+ A YK ++FAISAA TG AGVL+AHKLSFI Sbjct: 184 AAINILRSPTGRAFLAIRDSETAARSMGIDTARYKTRAFAISAAFTGLAGVLYAHKLSFI 243 Query: 246 SPEMFTLQLSIEFIIVILIGGTFSLHGAVLGAIFLVMIDPFLTYLKDDMPGVIGGIAATL 305 SPEMF+L +SIEF+++I+IGG SL GAV GAIF++M+DP L +KD +P + G + Sbjct: 244 SPEMFSLSMSIEFVMIIIIGGVLSLRGAVFGAIFMIMVDPILIVVKDKVPQLTLGAMQGV 303 Query: 306 GAGTERAGHIQDAVAAFASANGLKGAIYGIIIVLFVLFEPLGLYGRWLKIKLFFQLFPLY 365 G + IQ V A A GLK I+G+II+LF++FEP+GL GRW ++K +F+ FPLY Sbjct: 304 GLSDQLTDAIQAGVVRVAGAPGLKSLIFGLIIILFIIFEPMGLDGRWARVKSYFRQFPLY 363 Query: 366 KRATFKRQKIYVKSERNR 383 + + + Q++++KSERNR Sbjct: 364 RPTSSRAQRMFLKSERNR 381 >ref|YP_001990439.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] gb|ACE99963.1| inner-membrane translocator [Rhodopseudomonas palustris TIE-1] Length = 381 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 211/378 (55%), Positives = 278/378 (73%), Gaps = 2/378 (0%) Query: 6 KTDYEDDIKLFPHSGYIYSYGLLLAVLLIAPYVLSSYLMSQLVFVCIYATVGVGLLILTG 65 +T Y +LFP + Y +L+A L+ APYVL SY +SQLVFV IYA VG+ + +L+G Sbjct: 6 RTSYAQSEQLFPSKNAAFWYAVLVAALIAAPYVLESYYLSQLVFVLIYAIVGIAMNVLSG 65 Query: 66 FTGQASLGHAAFLAIGAYTAAYLQQFNVPFPVYFLAAGLLTGVVGALVGFPALRLQGIYL 125 GQ S+GHAAF+AIGAY+AA +++ +P PVY + AG TG++G LVG PALRL GIYL Sbjct: 66 QAGQVSIGHAAFMAIGAYSAAVAEKYGLPLPVYLVLAGGFTGLIGYLVGLPALRLHGIYL 125 Query: 126 VIATISFAFIVEEILARWESVTNGNEGMRVKTMQLLGTTVSRDGPTFYYLCLAVLVLTIV 185 IAT++FAFIVEEI+ RWESVTNGNEG+ + L G + G FYYLCL V V+ I+ Sbjct: 126 AIATLAFAFIVEEIVTRWESVTNGNEGLMLGAPSLFGLKLGAQG--FYYLCLGVTVVVIL 183 Query: 186 GTLNLLRSPTGRAFVAIRDSETAARSMGINVALYKVKSFAISAAITGFAGVLFAHKLSFI 245 +N+LRSPTGRAF+AIRDSETAARSMGI+ A YK ++FAISAA TG AGVL+AHKLSFI Sbjct: 184 AAINILRSPTGRAFLAIRDSETAARSMGIDTARYKTRAFAISAAFTGLAGVLYAHKLSFI 243 Query: 246 SPEMFTLQLSIEFIIVILIGGTFSLHGAVLGAIFLVMIDPFLTYLKDDMPGVIGGIAATL 305 SPEMF+L +SIEF+++I+IGG SL GAV GAIF++M+DP L +KD +P + + Sbjct: 244 SPEMFSLSMSIEFVMIIIIGGVLSLRGAVFGAIFMIMVDPILIVVKDKVPQLTLAAMQGI 303 Query: 306 GAGTERAGHIQDAVAAFASANGLKGAIYGIIIVLFVLFEPLGLYGRWLKIKLFFQLFPLY 365 G + IQ V A A GLK I+G+II+LF++FEP+GL GRW ++K +F+ FPLY Sbjct: 304 GLSDQLTDAIQAGVVRVAGAPGLKSLIFGLIIILFIIFEPMGLDGRWARVKSYFRQFPLY 363 Query: 366 KRATFKRQKIYVKSERNR 383 + + + Q++++KSERNR Sbjct: 364 RPTSSRAQRMFLKSERNR 381 >ref|YP_524736.1| inner-membrane translocator [Rhodoferax ferrireducens T118] gb|ABD71205.1| inner-membrane translocator [Rhodoferax ferrireducens T118] Length = 358 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/381 (52%), Positives = 266/381 (69%), Gaps = 25/381 (6%) Query: 1 MRFLFKTDYEDDIKLFPHSGYIYSYGLLLAVLLIAPYVLSSYLMSQLVFVCIYATVGVGL 60 MRF+FKTDY DI+L H G+++ YG L+ VLL+AP+++ Y ++QL FV IYA G+GL Sbjct: 1 MRFIFKTDYGQDIRLAKHGGHLFWYGALMLVLLLAPWLVQEYWLAQLTFVLIYAVAGLGL 60 Query: 61 LILTGFTGQASLGHAAFLAIGAYTAAYLQQFNVPFPVYFLAAGLLTGVVGALVGFPALRL 120 ++L GFTG SLGHAAFL +GAYT A L +PFP+ A L+ VG +VG PALR+ Sbjct: 61 MLLAGFTGLFSLGHAAFLGVGAYTQAVLTNMGLPFPLALACAAGLSAAVGLVVGLPALRV 120 Query: 121 QGIYLVIATISFAFIVEEILARWESVTNGNEGMRVKTMQLLGTTVSRDGPTFYYLCLAVL 180 +GIYL IAT+SF FIVEE+LARWESVT GN G+ +K + G T+ G FY+LCL + Sbjct: 121 KGIYLGIATLSFGFIVEEVLARWESVTGGNSGIHIKKPDMFGWTLD-SGEAFYFLCLLIT 179 Query: 181 VLTIVGTLNLLRSPTGRAFVAIRDSETAARSMGINVALYKVKSFAISAAITGFAGVLFAH 240 VL +G LNLLRSPTGRAFVAIRDSE +A+SMGI++A YK SFA+SAA+ G AG L+AH Sbjct: 180 VLATLGILNLLRSPTGRAFVAIRDSEISAQSMGIHLAYYKTLSFALSAALAGIAGALYAH 239 Query: 241 KLSFISPEMFTLQLSIEFIIVILIGGTFSLHGAVLGAIFLVMIDPFLTYLKDDMPGVIGG 300 +L FISP+ F + SI+ +++I+IGG S+HGA LGAIFL+ + + +KD +P IG Sbjct: 240 QLQFISPDQFNILQSIDLLLMIVIGGVGSVHGAFLGAIFLITMPQAIAMVKDYLPPTIG- 298 Query: 301 IAATLGAGTERAGHIQDAVAAFASANGLKGAIYGIIIVLFVLFEPLGLYGRWLKIKLFFQ 360 A GL+G +YG+++V FVLFEPLGLYGRWLK++ + Q Sbjct: 299 -----------------------QAPGLQGLVYGVVLVAFVLFEPLGLYGRWLKVRTYLQ 335 Query: 361 LFPLYKRATFKRQKIYVKSER 381 +FP Y++ FKRQK + KS+R Sbjct: 336 MFPFYRKGMFKRQKSFQKSDR 356