BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0058.p (620 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08630856.1| long-chain-fatty-acid--CoA ligase [Bradyrhizo... 884 0.0 ref|NP_774568.1| fatty-acid--CoA ligase [Bradyrhizobium japonicu... 858 0.0 ref|YP_002946806.1| AMP-dependent synthetase and ligase [Variovo... 570 e-160 ref|YP_004157881.1| AMP-dependent synthetase and ligase [Variovo... 565 e-159 emb|CBA27020.1| hypothetical protein Csp_A00190 [Curvibacter put... 532 e-149 >ref|ZP_08630856.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06388.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobiaceae bacterium SG-6C] Length = 606 Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/499 (83%), Positives = 457/499 (91%), Gaps = 4/499 (0%) Query: 7 LTVADTIARSFLLAVQTRGDRPAIREKKFGIWQPTSWREWLQISKDIAFGLQATGFRPGD 66 +TVADTIA+SFLLAV+TRGD+PAIREK G+WQ TSWR+WLQ +K+IA+ L A+GFRPGD Sbjct: 1 MTVADTIAKSFLLAVETRGDKPAIREKHLGVWQSTSWRQWLQTAKEIAYALDASGFRPGD 60 Query: 67 VASIIANAVPEWVYADMGILCAGGVSSGIYXTKKKNDSAAQVEYLINDSRTRVIFVEDEE 126 VASIIANA PEWV+AD+G+LCAGGVSSGIY T DSA+QVEYLINDSRT+VIF ED+E Sbjct: 61 VASIIANATPEWVFADIGVLCAGGVSSGIYPT----DSASQVEYLINDSRTKVIFAEDDE 116 Query: 127 QLDKVLTCRARCPTLEKIVVFDMEGLSGFSDPMVLSFAEFTALGRNHAQGNDAVWDEMTG 186 QLDK+L CRARCPTLEKIVVFDMEGLSGFSDPMV+S EF ALGRNH QG +A+W++M Sbjct: 117 QLDKILACRARCPTLEKIVVFDMEGLSGFSDPMVMSLDEFMALGRNHMQGREALWNQMIE 176 Query: 187 SRTASDLAILVYTSGTTGPPKGAMHSNRSVTHQMRHANDLYPSTDSEERLVFLPLCHVAE 246 SR +DLAILVYTSGTTGPPKGAMHSNRSV HQMR+A+ L TD EERLVFLPLCHVAE Sbjct: 177 SRGPNDLAILVYTSGTTGPPKGAMHSNRSVVHQMRYADHLLVPTDHEERLVFLPLCHVAE 236 Query: 247 RVGGYYISLALGSVMNFAESPETVPDNLREVQPTAFLAVPRIWEKFYSGITIALKDATPF 306 R+GGYY+S+A+GS+MNFAESPETVPDNLREVQPTAFLAVPRIWEKFYS ITIALKDATPF Sbjct: 237 RIGGYYLSIAVGSIMNFAESPETVPDNLREVQPTAFLAVPRIWEKFYSAITIALKDATPF 296 Query: 307 QNWMYARALAIGNRMTECRLQGEAPPLLLRIANRAAYWLVFRNIRRMLGLDRCRIALTGA 366 Q WMY ALAIG R+T+ RL+GE PPL LR+A +AAYWLVFRNIRRMLGLDR RIA TGA Sbjct: 297 QQWMYRHALAIGQRLTDYRLEGETPPLYLRLAGQAAYWLVFRNIRRMLGLDRVRIAFTGA 356 Query: 367 APISPDLIRWYLALGIDMREVYGQTENCGVATMMPADRIKLGSVGKAAPWGEVMICPKGE 426 APISPDLIRWYLA+G+DMREVYGQTENCGVAT+MP +RIKLGSVGKAAPWGEVMICPKGE Sbjct: 357 APISPDLIRWYLAIGLDMREVYGQTENCGVATLMPNERIKLGSVGKAAPWGEVMICPKGE 416 Query: 427 ILIKGDFLFMGYLNQPEKTAETIDAKGWLHTGDVGTIDNEGYVKITDRMKDIIITSGGKN 486 ILIKGD+LFMGYLNQPEKTAETID KGWLHTGDVGTIDNEG+VKITDRMKDIIITSGGKN Sbjct: 417 ILIKGDYLFMGYLNQPEKTAETIDEKGWLHTGDVGTIDNEGFVKITDRMKDIIITSGGKN 476 Query: 487 ITPSEIENQLKFSPYVSDA 505 ITPSEIENQLKFSPY+SDA Sbjct: 477 ITPSEIENQLKFSPYISDA 495 >ref|NP_774568.1| fatty-acid--CoA ligase [Bradyrhizobium japonicum USDA 110] dbj|BAC53193.1| bll7928 [Bradyrhizobium japonicum USDA 110] Length = 612 Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/505 (80%), Positives = 450/505 (89%), Gaps = 4/505 (0%) Query: 1 MAGPAVLTVADTIARSFLLAVQTRGDRPAIREKKFGIWQPTSWREWLQISKDIAFGLQAT 60 MA PAVLTVADTIA+SFL A +TRGDRPAIREKKFGIWQPTSWREWL+ISK+IA+ L+A Sbjct: 1 MARPAVLTVADTIAKSFLRAAETRGDRPAIREKKFGIWQPTSWREWLEISKEIAYALRAI 60 Query: 61 GFRPGDVASIIANAVPEWVYADMGILCAGGVSSGIYXTKKKNDSAAQVEYLINDSRTRVI 120 GF PGDVASIIANAVPEWV+ADMGILCAGGVSSGIY T D+++QV+YL+NDS T+VI Sbjct: 61 GFMPGDVASIIANAVPEWVHADMGILCAGGVSSGIYPT----DASSQVQYLVNDSGTKVI 116 Query: 121 FVEDEEQLDKVLTCRARCPTLEKIVVFDMEGLSGFSDPMVLSFAEFTALGRNHAQGNDAV 180 F EDEEQLDK+LTCR RCP+L++IVVFDMEGLSGFSD MV+S EF ALGRNH G +A+ Sbjct: 117 FAEDEEQLDKILTCRTRCPSLQRIVVFDMEGLSGFSDDMVMSLDEFRALGRNHMVGREAL 176 Query: 181 WDEMTGSRTASDLAILVYTSGTTGPPKGAMHSNRSVTHQMRHANDLYPSTDSEERLVFLP 240 W EM SR DLA+LVYTSGTTGPPKGAMH+NRSVTHQMRHAND P+ ++E+RL+FLP Sbjct: 177 WQEMIDSRGPEDLAVLVYTSGTTGPPKGAMHANRSVTHQMRHANDFIPARENEDRLIFLP 236 Query: 241 LCHVAERVGGYYISLALGSVMNFAESPETVPDNLREVQPTAFLAVPRIWEKFYSGITIAL 300 LCHVAER+GGYYIS+ALGSVMNFAES ETVPDNLREVQPT FLAVPRIWEKFYS ITIAL Sbjct: 237 LCHVAERIGGYYISVALGSVMNFAESTETVPDNLREVQPTIFLAVPRIWEKFYSAITIAL 296 Query: 301 KDATPFQNWMYARALAIGNRMTECRLQGEAPPLLLRIANRAAYWLVFRNIRRMLGLDRCR 360 KDATP Q W+Y RA+ IG RM +CR++G APPL LR+AN+ AY L FRNIRRM+GLDRCR Sbjct: 297 KDATPLQQWVYRRAIGIGYRMVDCRIEGRAPPLSLRLANQLAYRLAFRNIRRMIGLDRCR 356 Query: 361 IALTGAAPISPDLIRWYLALGIDMREVYGQTENCGVATMMPADRIKLGSVGKAAPWGEVM 420 IA TGAAPI+P+LIRWYLALGIDM EVYGQTENCGVATMMPA RIKLGSVG A WGEV Sbjct: 357 IAFTGAAPIAPELIRWYLALGIDMHEVYGQTENCGVATMMPATRIKLGSVGTAVSWGEVA 416 Query: 421 ICPKGEILIKGDFLFMGYLNQPEKTAETIDAKGWLHTGDVGTIDNEGYVKITDRMKDIII 480 + P GEILIKGDFLFMGYLNQPEKTAE ID +GWLHTGDVGTIDNEG+V+ITDRMKDIII Sbjct: 417 LSPDGEILIKGDFLFMGYLNQPEKTAEAIDPRGWLHTGDVGTIDNEGFVRITDRMKDIII 476 Query: 481 TSGGKNITPSEIENQLKFSPYVSDA 505 TSGGKN+TPSEIENQLKFSPY+SDA Sbjct: 477 TSGGKNVTPSEIENQLKFSPYISDA 501 >ref|YP_002946806.1| AMP-dependent synthetase and ligase [Variovorax paradoxus S110] gb|ACS21540.1| AMP-dependent synthetase and ligase [Variovorax paradoxus S110] Length = 626 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 279/503 (55%), Positives = 360/503 (71%), Gaps = 5/503 (0%) Query: 4 PAVLTVADTIARSFLLAVQTRGDRPAIREKKFGIWQPTSWREWLQISKDIAFGLQATGFR 63 P + DTI F AV+ R D+ +R+K+FGIW+ +WR+ + ++IA GL A GF Sbjct: 22 PGIAVPGDTIPAVFWKAVELRADKIWMRQKEFGIWRAWTWRQTAEAVREIAGGLLALGFG 81 Query: 64 PGDVASIIANAVPEWVYADMGILCAGGVSSGIYXTKKKNDSAAQVEYLINDSRTRVIFVE 123 PG+ ASI+AN V EWV D+ +L GGVS+GIY T D+A+QV YL DSRT ++FVE Sbjct: 82 PGECASILANTVIEWVLCDVAVLSCGGVSNGIYPT----DAASQVHYLCEDSRTTLLFVE 137 Query: 124 DEEQLDKVLTCRARCPTLEKIVVFDMEGLSGFSDPMVLSFAEFTALGRNHAQGNDAVWDE 183 D+EQLDK L RA+ P L KIVVFDMEGL DP V+S ALGR+H Q + DE Sbjct: 138 DDEQLDKALEVRAQLPMLRKIVVFDMEGLRELDDPGVISLDALRALGRDHLQAHPQALDE 197 Query: 184 MTGSRTASDLAILVYTSGTTGPPKGAMHSNRSVTHQMRHANDLYPSTDSEERLVFLPLCH 243 + DLAILVYTSGTTG PKGAMHS+R + + MR N L + +ER+ FLPLCH Sbjct: 198 RIAACRPEDLAILVYTSGTTGKPKGAMHSHRGLVYTMRGYNTLLAQGEGDERMCFLPLCH 257 Query: 244 VAERVGGYYISLALGSVMNFAESPETVPDNLREVQPTAFLAVPRIWEKFYSGITIALKDA 303 +AER+GG Y ++ GS++NF E+PETVP+N+RE+ PT F AVPR+WEKFYSG+ IALK+A Sbjct: 258 IAERMGGEYFAMYTGSILNFVENPETVPENVREISPTVFTAVPRVWEKFYSGVMIALKEA 317 Query: 304 TPFQNWMYARALAIGNRMTECRLQGEAPPLLLRIANRAAYWLVFRNIRRMLGLDRCRIAL 363 + Q Y ++ +G ++ E L+G LR+ R A WL N+R+++G+ R R + Sbjct: 318 SRLQQAAYGWSIGVGRQIAERVLEGRPVGAWLRLKFRLARWLALDNVRKLIGIHRARFLV 377 Query: 364 TGAAPISPDLIRWYLALGIDMREVYGQTENCGVATMMPADRIKLGSVGKAAPWGEVMICP 423 TGAAPISP+L+RWYLALG+ M EV+G TE+CG +T +P RI+ GS+G A + EV + P Sbjct: 378 TGAAPISPELVRWYLALGVPMLEVWGMTESCGASTGVPPSRIRPGSIGPATSYNEVRLDP 437 Query: 424 K-GEILIKGDFLFMGYLNQPEKTAETIDAKGWLHTGDVGTIDNEGYVKITDRMKDIIITS 482 + GEIL++G +FMGYLN PEKTAETIDA GWLHTGDVGT D EGY +ITDRMKDIIIT+ Sbjct: 438 QTGEILVRGPNVFMGYLNLPEKTAETIDADGWLHTGDVGTADAEGYFRITDRMKDIIITA 497 Query: 483 GGKNITPSEIENQLKFSPYVSDA 505 GGKNITPSE+EN+LKFSPY++DA Sbjct: 498 GGKNITPSELENELKFSPYITDA 520 >ref|YP_004157881.1| AMP-dependent synthetase and ligase [Variovorax paradoxus EPS] gb|ADU39770.1| AMP-dependent synthetase and ligase [Variovorax paradoxus EPS] Length = 626 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 276/501 (55%), Positives = 359/501 (71%), Gaps = 5/501 (0%) Query: 6 VLTVADTIARSFLLAVQTRGDRPAIREKKFGIWQPTSWREWLQISKDIAFGLQATGFRPG 65 V+ DT+ F AV+ RGD+ +R+K+FGIW+ +WR+ + ++IA GL A GF G Sbjct: 24 VVVPGDTVPAVFWKAVELRGDKVWMRQKEFGIWRTWTWRQTAEAVREIAGGLLALGFGHG 83 Query: 66 DVASIIANAVPEWVYADMGILCAGGVSSGIYXTKKKNDSAAQVEYLINDSRTRVIFVEDE 125 + ASI++N V EWV D+ +L GGVS+GIY T D+A+QV YL DSRT V+FVED+ Sbjct: 84 ECASILSNTVIEWVLCDVAVLSCGGVSNGIYPT----DAASQVHYLCEDSRTTVLFVEDD 139 Query: 126 EQLDKVLTCRARCPTLEKIVVFDMEGLSGFSDPMVLSFAEFTALGRNHAQGNDAVWDEMT 185 EQLDK L RA+ P L KI+V DMEGL DP V+S ALGR H + N ++ Sbjct: 140 EQLDKALEVRAQLPLLRKIIVLDMEGLRDLDDPGVISLDALRALGREHLKANPQALEQRI 199 Query: 186 GSRTASDLAILVYTSGTTGPPKGAMHSNRSVTHQMRHANDLYPSTDSEERLVFLPLCHVA 245 + A DLAILVYTSGTTG PKGAMHS+R + + MR N L +++ER+ FLPLCH+A Sbjct: 200 AACRAEDLAILVYTSGTTGKPKGAMHSHRGLVYTMRGYNTLLAQGETDERMCFLPLCHIA 259 Query: 246 ERVGGYYISLALGSVMNFAESPETVPDNLREVQPTAFLAVPRIWEKFYSGITIALKDATP 305 ER+GG Y ++ GS++NF E+PETVP+N+RE+ PT F AVPR+WEKFYSG+ IALK+A+ Sbjct: 260 ERMGGEYFAMYTGSILNFVENPETVPENVREISPTVFTAVPRVWEKFYSGVMIALKEASR 319 Query: 306 FQNWMYARALAIGNRMTECRLQGEAPPLLLRIANRAAYWLVFRNIRRMLGLDRCRIALTG 365 Q Y ++ +G ++ + LQG+ LR R A WL N+R+++G+ R R +TG Sbjct: 320 LQQAAYGWSIGVGQQIADRVLQGKPIGAGLRFKFRIARWLALNNVRKLIGIHRARFLVTG 379 Query: 366 AAPISPDLIRWYLALGIDMREVYGQTENCGVATMMPADRIKLGSVGKAAPWGEVMICPK- 424 AAPISPDL+RWYLALG+ M EV+G TE+CG +T +P RI GS+G A + EV + P+ Sbjct: 380 AAPISPDLVRWYLALGVPMLEVWGMTESCGASTGVPPSRIAPGSIGPATSYNEVRLDPET 439 Query: 425 GEILIKGDFLFMGYLNQPEKTAETIDAKGWLHTGDVGTIDNEGYVKITDRMKDIIITSGG 484 GEIL++G +FMGYLN PEKTAETIDA GWLHTGDVG +D EGY +ITDRMKDIIIT+GG Sbjct: 440 GEILVRGPNVFMGYLNLPEKTAETIDADGWLHTGDVGLVDAEGYFRITDRMKDIIITAGG 499 Query: 485 KNITPSEIENQLKFSPYVSDA 505 KNITPSE+EN+LKFSPYV+DA Sbjct: 500 KNITPSELENELKFSPYVTDA 520 >emb|CBA27020.1| hypothetical protein Csp_A00190 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 633 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 260/496 (52%), Positives = 344/496 (69%), Gaps = 5/496 (1%) Query: 11 DTIARSFLLAVQTRGDRPAIREKKFGIWQPTSWREWLQISKDIAFGLQATGFRPGDVASI 70 +TI F AV RG +R+K G+W+ +W + ++IA GL + GF G ASI Sbjct: 36 ETIPAMFWNAVAARGPDIWLRQKHLGLWRSWTWNQTGDAVREIAGGLISLGFEQGHTASI 95 Query: 71 IANAVPEWVYADMGILCAGGVSSGIYXTKKKNDSAAQVEYLINDSRTRVIFVEDEEQLDK 130 +AN V EWV+AD+ +L AGGVS+GIY T D+ +QV+YL DS TR +FVED+EQLDK Sbjct: 96 LANTVVEWVWADLAVLSAGGVSNGIYPT----DAPSQVQYLCEDSGTRFLFVEDDEQLDK 151 Query: 131 VLTCRARCPTLEKIVVFDMEGLSGFSDPMVLSFAEFTALGRNHAQGNDAVWDEMTGSRTA 190 L RA+C L+KI+V DMEGL G DP VLS ALGR + N + + + Sbjct: 152 ALEVRAQCSKLQKIIVMDMEGLRGLDDPDVLSLDALRALGRTYNAANPNAVPQRSANCKP 211 Query: 191 SDLAILVYTSGTTGPPKGAMHSNRSVTHQMRHANDLYPSTDSEERLVFLPLCHVAERVGG 250 DLAILVYTSGTTG PKGAMH ++ + + +R N L S+ER+ FLPLCH+AER+GG Sbjct: 212 EDLAILVYTSGTTGKPKGAMHLHQGIVYSVRGYNTLIAQDASDERMCFLPLCHIAERLGG 271 Query: 251 YYISLALGSVMNFAESPETVPDNLREVQPTAFLAVPRIWEKFYSGITIALKDATPFQNWM 310 Y SL G+ +NF E+PET+P+N+RE+ PT F AVPR+WEKFYS + IALK++ FQ ++ Sbjct: 272 EYFSLYTGAKLNFVENPETIPENVREIAPTVFTAVPRVWEKFYSSVMIALKESGKFQQFV 331 Query: 311 YARALAIGNRMTECRLQGEAPPLLLRIANRAAYWLVFRNIRRMLGLDRCRIALTGAAPIS 370 Y + +G R+ + L G+ L++ + A L N+R+++G+ R R +TGAAPIS Sbjct: 332 YGWGINVGARIADKVLAGQPVEASLKLQFKLAQVLALNNVRKLIGIHRSRFLITGAAPIS 391 Query: 371 PDLIRWYLALGIDMREVYGQTENCGVATMMPADRIKLGSVGKAAPWGEVMICP-KGEILI 429 PDL+RWYLALG+ M EV+G TE CG +T +P ++IK GS+G AA + EV + P GEI++ Sbjct: 392 PDLVRWYLALGLPMLEVWGMTETCGASTGVPVNKIKPGSIGPAASFNEVKLDPATGEIMV 451 Query: 430 KGDFLFMGYLNQPEKTAETIDAKGWLHTGDVGTIDNEGYVKITDRMKDIIITSGGKNITP 489 +G +F GYLN PEKTAETI GWLHTGDVG +D +GY +ITDRMKDIIIT+GGKNITP Sbjct: 452 RGKNVFAGYLNLPEKTAETITPDGWLHTGDVGVVDEDGYFRITDRMKDIIITAGGKNITP 511 Query: 490 SEIENQLKFSPYVSDA 505 SE+EN LKFSPY++DA Sbjct: 512 SELENDLKFSPYITDA 527