BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0056.p (248 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774565.1| hypothetical protein blr7925 [Bradyrhizobium ja... 263 2e-68 ref|YP_001203054.1| putative signal peptide [Bradyrhizobium sp. ... 253 2e-65 ref|YP_001242944.1| hypothetical protein BBta_7156 [Bradyrhizobi... 252 4e-65 ref|ZP_08629835.1| hypothetical protein CSIRO_2930 [Bradyrhizobi... 225 5e-57 ref|NP_772110.1| hypothetical protein blr5470 [Bradyrhizobium ja... 192 4e-47 >ref|NP_774565.1| hypothetical protein blr7925 [Bradyrhizobium japonicum USDA 110] dbj|BAC53190.1| blr7925 [Bradyrhizobium japonicum USDA 110] Length = 243 Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 136/237 (57%), Positives = 168/237 (70%), Gaps = 4/237 (1%) Query: 1 MRFSLRPLALRAVMLSFGLALAAPVAELNAASLLSPGPATLIRKSTEPFGLTTSLLADGG 60 M + R A RA+++ GL L AEL A +LLSPG L+RKS EPFG+ ++ G Sbjct: 1 METAARSRAWRAILVLCGLVLLGSAAELRAGTLLSPGAGVLVRKSAEPFGVFAFAISSGS 60 Query: 61 LYDKWLGVQRQLADELEQLAACESDRAGCVSPAALRFLAIVDAGRARQGRARLGEINRAI 120 L KW ++ +L D++ QLA C+ DR C SPAAL+ LAIVD RAR GRARLGE NRAI Sbjct: 61 LQQKWSALKSRLDDDMVQLALCDGDRDNCASPAALKLLAIVDQARARDGRARLGETNRAI 120 Query: 121 NLAIRPGSDLAAYGEPDVWTTPLATFARGSGDCEDYAIAKLVALRKAGVAPEDLRIVVLH 180 NLAIR +D G DVW++PLATF RG+GDCEDYAIAKL ALR AGVA EDLR+VV+ Sbjct: 121 NLAIRAAND----GADDVWSSPLATFQRGAGDCEDYAIAKLAALRLAGVATEDLRVVVVR 176 Query: 181 DLVGGEDHALVAARLDGRWLTLDNRRMAMIEDSDIRSFRPTFVIDQHGVSRYVDAPL 237 D+ GE+HA+ AA+LDG WL LDNRRMAM+ED D R ++P FV+ Q V +YVD P+ Sbjct: 177 DIRAGEEHAVAAAKLDGHWLMLDNRRMAMVEDDDSRGYQPLFVLYQSAVLKYVDEPV 233 >ref|YP_001203054.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL74817.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 239 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 128/198 (64%), Positives = 150/198 (75%) Query: 47 EPFGLTTSLLADGGLYDKWLGVQRQLADELEQLAACESDRAGCVSPAALRFLAIVDAGRA 106 EPFGL + + G L DKWL + R+L DE QLA C+ DR C SPAALR LAIVD GRA Sbjct: 39 EPFGLLRTEIEAGPLRDKWLTLARKLDDERVQLALCDGDRERCASPAALRLLAIVDQGRA 98 Query: 107 RQGRARLGEINRAINLAIRPGSDLAAYGEPDVWTTPLATFARGSGDCEDYAIAKLVALRK 166 R+GRARLGEINRAINLAIRP SDLA YGE DVW +PLATFA +GDCEDYAIAK VALR Sbjct: 99 REGRARLGEINRAINLAIRPASDLAQYGEMDVWASPLATFASLAGDCEDYAIAKFVALRL 158 Query: 167 AGVAPEDLRIVVLHDLVGGEDHALVAARLDGRWLTLDNRRMAMIEDSDIRSFRPTFVIDQ 226 AG+ DLRI++L D + GEDHA+ +ARLDG WL LDN+RMAMI+DSD R RP FV+D Sbjct: 159 AGLPQRDLRIIILRDTISGEDHAVASARLDGHWLLLDNQRMAMIQDSDARRIRPRFVLDD 218 Query: 227 HGVSRYVDAPLVAEAAWR 244 G++ D+P +AE + R Sbjct: 219 IGIAALQDSPWMAEVSSR 236 >ref|YP_001242944.1| hypothetical protein BBta_7156 [Bradyrhizobium sp. BTAi1] gb|ABQ39038.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 251 Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 128/205 (62%), Positives = 148/205 (72%) Query: 37 GPATLIRKSTEPFGLTTSLLADGGLYDKWLGVQRQLADELEQLAACESDRAGCVSPAALR 96 G ++ + EPFGL L G + KW + RQLADE QLA C+ DR CVS AALR Sbjct: 34 GLTIILEDTGEPFGLPRLDLEAGAVKAKWQTLARQLADERVQLALCDGDRERCVSDAALR 93 Query: 97 FLAIVDAGRARQGRARLGEINRAINLAIRPGSDLAAYGEPDVWTTPLATFARGSGDCEDY 156 LAIVD GRA+ GRARLGEINRAINLAIRP SD A YG DVW+ PLATF R +GDCEDY Sbjct: 94 LLAIVDQGRAKDGRARLGEINRAINLAIRPASDFAQYGRMDVWSAPLATFDRRAGDCEDY 153 Query: 157 AIAKLVALRKAGVAPEDLRIVVLHDLVGGEDHALVAARLDGRWLTLDNRRMAMIEDSDIR 216 AIAK VALR AG+A DLRIV++ DL GEDHA+ A RLDGRWL LDN+RMAM+ DSD R Sbjct: 154 AIAKFVALRLAGIAASDLRIVIVRDLARGEDHAVAAVRLDGRWLMLDNQRMAMVRDSDAR 213 Query: 217 SFRPTFVIDQHGVSRYVDAPLVAEA 241 RP FV+D+ G+ RY +P +EA Sbjct: 214 QIRPLFVMDETGIGRYQASPFWSEA 238 >ref|ZP_08629835.1| hypothetical protein CSIRO_2930 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07478.1| hypothetical protein CSIRO_2930 [Bradyrhizobiaceae bacterium SG-6C] Length = 281 Score = 225 bits (573), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 128/239 (53%), Positives = 159/239 (66%), Gaps = 7/239 (2%) Query: 9 ALRAVMLSFGLALAAPVAELNAASLLSPGPATLIRKSTEPFGLTTSLLADGGLYDKWLGV 68 AL A++L+ AA V N A+ G AT + S EPFGL+TS L +G L KWL V Sbjct: 15 ALVAILLNADAHAAAYVQPDNPAAT---GFATPV--SDEPFGLSTSTLTEGPLRAKWLAV 69 Query: 69 QRQLADELEQLAACESDRAGCVSPAALRFLAIVDAGRARQGRARLGEINRAINLAIRPGS 128 + +A E + +AAC +DR C S ALRFL IV A AR+G ARLGE+NRAINLAIRP S Sbjct: 70 AKTIAAEADVIAACAADREHCASQPALRFLDIVSAAMAREGLARLGEVNRAINLAIRPVS 129 Query: 129 DLAAYGEPDVWTTPLATFARGSGDCEDYAIAKLVALRKAGVAPEDLRIVVLHDLVGGEDH 188 D A YG+ D W++PL T A G+GDCEDYAIAKLVALR AGV +DLR+V++ + G+DH Sbjct: 130 DRAQYGQEDYWSSPLVTLASGAGDCEDYAIAKLVALRAAGVPEKDLRLVIIRETATGDDH 189 Query: 189 ALVAARLDGRWLTLDNRRMAMIEDSDIRSFRPTFVIDQHGVSRYVDAPLVAEAAW-RPA 246 A+VAAR GRW LDNR M+ED+ +RP F ID G R+ + P+ A AA RPA Sbjct: 190 AVVAARSGGRWRVLDNRTFLMVEDNGFGKYRPLFAIDAEGAKRF-EQPVFANAAEPRPA 247 >ref|NP_772110.1| hypothetical protein blr5470 [Bradyrhizobium japonicum USDA 110] dbj|BAC50735.1| blr5470 [Bradyrhizobium japonicum USDA 110] Length = 341 Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 100/204 (49%), Positives = 134/204 (65%), Gaps = 1/204 (0%) Query: 29 NAASLLSPGPATLIRKSTEPFGLTTSLLADGGLYDKWLGVQRQLADELEQLAACESDRAG 88 N A+ +P P + K EPFGL +G L+ KW G++ +LA + E L+ C++D Sbjct: 94 NIATDAAPEPGPVPAKGDEPFGLFIFRAPEGLLWQKWRGLETRLASDAETLSRCQTDAGN 153 Query: 89 CVSPAALRFLAIVDAGRARQGRARLGEINRAINLAIRPGSDLAAYGEPDVWTTPLATFAR 148 C S AA +FL ++ A +++ GRARL E NRA+N A+R SD A +GE D W++PL TFA Sbjct: 154 CPSNAA-QFLRLIGAVKSKSGRARLDEANRAVNTAVRYVSDFAQHGEADRWSSPLETFAT 212 Query: 149 GSGDCEDYAIAKLVALRKAGVAPEDLRIVVLHDLVGGEDHALVAARLDGRWLTLDNRRMA 208 GDCEDYAIAK VALR+AG EDLR+V++ D +DHA++AARLDG+WL LDNRR Sbjct: 213 AKGDCEDYAIAKYVALREAGFPREDLRLVLVRDRAVRQDHAVLAARLDGQWLVLDNRRSE 272 Query: 209 MIEDSDIRSFRPTFVIDQHGVSRY 232 +IEDS + P F ID GV + Sbjct: 273 LIEDSGATNLAPLFAIDHAGVHLF 296