BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0052.p (535 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774562.1| ABC transporter substrate-binding protein [Brad... 1024 0.0 ref|YP_001242939.1| ABC transporter substrate-binding protein [B... 968 0.0 ref|YP_001203057.1| ABC transporter substrate-binding protein [B... 965 0.0 ref|NP_946115.1| oligopeptide ABC transporter periplasmic bindin... 960 0.0 ref|YP_483848.1| extracellular solute-binding protein [Rhodopseu... 959 0.0 >ref|NP_774562.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53187.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 585 Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/535 (92%), Positives = 517/535 (96%), Gaps = 4/535 (0%) Query: 1 MRARNSILMAAMALALTAGWPAMSAQAESIVRYGISMADIPLTTGQPDRGAGAYQFTAYT 60 MR R + A +ALA++A +SA+AE++VRYGISMADIPLTTGQPDRGAGAYQFTAYT Sbjct: 55 MRIRLTTCFAVLALAISA----ISARAETVVRYGISMADIPLTTGQPDRGAGAYQFTAYT 110 Query: 61 IYDPLVAWEMDVADRPGKLVPGLATEWKVDDNDKTKWRFTLRKGVKFHDGSDFNADAVIW 120 IYDPLVAWEMDVADRPGKLVPGLATEWKVDD DKTKWRFTLRKGVKFHDGS+FNADAVIW Sbjct: 111 IYDPLVAWEMDVADRPGKLVPGLATEWKVDDADKTKWRFTLRKGVKFHDGSEFNADAVIW 170 Query: 121 NLDKVLNDKAPQFDKRQSAQVKTRLPSVASYAKIDDFTIEITTKTVDSFFPYQMLWFLVS 180 NLDKVLNDKAPQFDKRQSAQVKTRLPSVASYAKIDD T+EITTKTVDSFFPYQMLWFLVS Sbjct: 171 NLDKVLNDKAPQFDKRQSAQVKTRLPSVASYAKIDDSTVEITTKTVDSFFPYQMLWFLVS 230 Query: 181 SPAQYEKLGKDWDKFASQPSGTGPFKLTKLVPRELAELTKNPDYWDKKRLAKVDKMILIP 240 SPAQYEKLGKDWDKFAS+PSGTGPFKLTKLVPRELAELTKNPDYW+KKR+ KVDK++L+P Sbjct: 231 SPAQYEKLGKDWDKFASEPSGTGPFKLTKLVPRELAELTKNPDYWNKKRIPKVDKLVLVP 290 Query: 241 MPEALTRTNALLAGQVDLIETPAPDAVPQLKAAGMRIVDNVTPHVWNYHLSVLPGSPWTD 300 MPEALTRTNALLAGQVDLIETPAPDAVPQLKAAGM++VDNVTPHVWNYHLSVLPGSPWTD Sbjct: 291 MPEALTRTNALLAGQVDLIETPAPDAVPQLKAAGMKLVDNVTPHVWNYHLSVLPGSPWTD 350 Query: 301 IRLRKALNLAIDREAVVGLMNGLAKPAKGQVDPSSPWFGKPTFELKYDLAAARKLVEEAG 360 IRLRKALNLAIDREAVVGLMNGLAKPAKGQVDPSSPWFGKPTFELKYDLAAA+KLVEEAG Sbjct: 351 IRLRKALNLAIDREAVVGLMNGLAKPAKGQVDPSSPWFGKPTFELKYDLAAAKKLVEEAG 410 Query: 361 YSKDKPLKATFIIAQGGTGQMLSLPMNEFLQQSFKEIGIDIDFKVVELETLYTHWRKGAA 420 YSK KPLK TFIIAQGGTGQMLSLPMNEFLQQSFKEIGIDIDFKVVELETLYTHWRKGAA Sbjct: 411 YSKAKPLKTTFIIAQGGTGQMLSLPMNEFLQQSFKEIGIDIDFKVVELETLYTHWRKGAA 470 Query: 421 DEMNAGITANNIAYVTSDPLYAIVRFFHSGQIAPVGVNWGGYKNPKVDALIDEAKQTFDS 480 DEMNAGITANNIAYVTSDPLYAIVRFFHSGQIAPVGVNWGGYKNPKVDALIDEAKQTFDS Sbjct: 471 DEMNAGITANNIAYVTSDPLYAIVRFFHSGQIAPVGVNWGGYKNPKVDALIDEAKQTFDS 530 Query: 481 AKQDALLAQAHALIVDDAALVWVVHDTNPHALSPKVKTFVQAQHWFQDLTQIGLE 535 AKQD LLAQAHALIVDDAALVWVVHDTNPHALSPK+K FVQAQHWFQDLT IG+E Sbjct: 531 AKQDELLAQAHALIVDDAALVWVVHDTNPHALSPKIKQFVQAQHWFQDLTTIGVE 585 >ref|YP_001242939.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ39033.1| Putative ABC transporter (substrate binding protein) [Bradyrhizobium sp. BTAi1] Length = 531 Score = 968 bits (2502), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/513 (90%), Positives = 490/513 (95%) Query: 23 MSAQAESIVRYGISMADIPLTTGQPDRGAGAYQFTAYTIYDPLVAWEMDVADRPGKLVPG 82 ++A+AE+I+RYGISMADIPLTTGQPDRGAGAYQFT YTIYDPLVAW+M VAD+PGKL+PG Sbjct: 19 VAARAETILRYGISMADIPLTTGQPDRGAGAYQFTGYTIYDPLVAWDMSVADKPGKLIPG 78 Query: 83 LATEWKVDDNDKTKWRFTLRKGVKFHDGSDFNADAVIWNLDKVLNDKAPQFDKRQSAQVK 142 LATEWKVDD DKTKWRFTLRKGVKFHDGSDFNADAVIWNLDKVLNDKAPQFDKRQSAQVK Sbjct: 79 LATEWKVDDADKTKWRFTLRKGVKFHDGSDFNADAVIWNLDKVLNDKAPQFDKRQSAQVK 138 Query: 143 TRLPSVASYAKIDDFTIEITTKTVDSFFPYQMLWFLVSSPAQYEKLGKDWDKFASQPSGT 202 TRLPSVASYAKIDD T+EITTKTVDSFFPYQMLWFL+SSPAQYEKLGKDWDKFASQPSGT Sbjct: 139 TRLPSVASYAKIDDSTVEITTKTVDSFFPYQMLWFLISSPAQYEKLGKDWDKFASQPSGT 198 Query: 203 GPFKLTKLVPRELAELTKNPDYWDKKRLAKVDKMILIPMPEALTRTNALLAGQVDLIETP 262 GPFKLTKLVPRELAEL+KN +YW+K RL K DK++L+PMPEALTRTNALLAGQVDLIETP Sbjct: 199 GPFKLTKLVPRELAELSKNSEYWNKDRLPKTDKLVLVPMPEALTRTNALLAGQVDLIETP 258 Query: 263 APDAVPQLKAAGMRIVDNVTPHVWNYHLSVLPGSPWTDIRLRKALNLAIDREAVVGLMNG 322 APDAVPQLKAAGM++VDNVTPHVWNYHLSVLPGSPWTDIRLRKALNLAI+R+ VVGLMNG Sbjct: 259 APDAVPQLKAAGMKLVDNVTPHVWNYHLSVLPGSPWTDIRLRKALNLAINRDEVVGLMNG 318 Query: 323 LAKPAKGQVDPSSPWFGKPTFELKYDLAAARKLVEEAGYSKDKPLKATFIIAQGGTGQML 382 LAKPAKGQVDPSSPWFGKP+FELKYDLAAA+KLVEEAGYS KPLK TFIIAQGGTGQML Sbjct: 319 LAKPAKGQVDPSSPWFGKPSFELKYDLAAAKKLVEEAGYSPAKPLKTTFIIAQGGTGQML 378 Query: 383 SLPMNEFLQQSFKEIGIDIDFKVVELETLYTHWRKGAADEMNAGITANNIAYVTSDPLYA 442 SLPMNEFLQQSFKEIGIDIDFKVVELETLYTHWRKGAADEMNAGITANNIAYVTSDPLYA Sbjct: 379 SLPMNEFLQQSFKEIGIDIDFKVVELETLYTHWRKGAADEMNAGITANNIAYVTSDPLYA 438 Query: 443 IVRFFHSGQIAPVGVNWGGYKNPKVDALIDEAKQTFDSAKQDALLAQAHALIVDDAALVW 502 IVRFF S QIAP GVNWGGYKNPKVDALI EAKQTFD AKQD L+AQAHA +VDDA LVW Sbjct: 439 IVRFFASDQIAPTGVNWGGYKNPKVDALIAEAKQTFDPAKQDELIAQAHAAVVDDAVLVW 498 Query: 503 VVHDTNPHALSPKVKTFVQAQHWFQDLTQIGLE 535 VVHDTNPHALSPKVK FVQAQHWFQDLT IG E Sbjct: 499 VVHDTNPHALSPKVKKFVQAQHWFQDLTTIGAE 531 >ref|YP_001203057.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL74820.1| Putative ABC transporter (substrate binding protein) [Bradyrhizobium sp. ORS 278] Length = 527 Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/510 (90%), Positives = 487/510 (95%) Query: 26 QAESIVRYGISMADIPLTTGQPDRGAGAYQFTAYTIYDPLVAWEMDVADRPGKLVPGLAT 85 +AE+++RYGISMADIPLTTGQPDRGAGAYQFT YTIYDPLVAW+M VAD+PGKL+PGLAT Sbjct: 18 RAETVLRYGISMADIPLTTGQPDRGAGAYQFTGYTIYDPLVAWDMSVADKPGKLIPGLAT 77 Query: 86 EWKVDDNDKTKWRFTLRKGVKFHDGSDFNADAVIWNLDKVLNDKAPQFDKRQSAQVKTRL 145 EWKVDD DK KWRFTLRKGVKFHDGSDFNADAVIWNLDKVLNDKAPQFDKRQSAQVKTRL Sbjct: 78 EWKVDDADKKKWRFTLRKGVKFHDGSDFNADAVIWNLDKVLNDKAPQFDKRQSAQVKTRL 137 Query: 146 PSVASYAKIDDFTIEITTKTVDSFFPYQMLWFLVSSPAQYEKLGKDWDKFASQPSGTGPF 205 PSVASYAKIDD T+EITTKTVDSFFPYQMLWFL+SSPAQYEKLGKDWDKFASQPSGTGPF Sbjct: 138 PSVASYAKIDDSTVEITTKTVDSFFPYQMLWFLISSPAQYEKLGKDWDKFASQPSGTGPF 197 Query: 206 KLTKLVPRELAELTKNPDYWDKKRLAKVDKMILIPMPEALTRTNALLAGQVDLIETPAPD 265 KLT+LVPRELAEL++N +YW+K R+ K DK++L+PMPEALTRTNALLAGQVDLIETPAPD Sbjct: 198 KLTRLVPRELAELSRNSEYWNKDRIPKTDKLVLVPMPEALTRTNALLAGQVDLIETPAPD 257 Query: 266 AVPQLKAAGMRIVDNVTPHVWNYHLSVLPGSPWTDIRLRKALNLAIDREAVVGLMNGLAK 325 AVPQLKAAGM++VDNVTPHVWNYHLSVLPGSPWTDIRLRKALNLAI+R+ VVGLMNGLAK Sbjct: 258 AVPQLKAAGMKLVDNVTPHVWNYHLSVLPGSPWTDIRLRKALNLAINRDEVVGLMNGLAK 317 Query: 326 PAKGQVDPSSPWFGKPTFELKYDLAAARKLVEEAGYSKDKPLKATFIIAQGGTGQMLSLP 385 PAKGQVDPSSPWFGKPTFELKYDLAAA+KLVEEAGYS KPLK TFIIAQGGTGQMLSLP Sbjct: 318 PAKGQVDPSSPWFGKPTFELKYDLAAAKKLVEEAGYSPAKPLKTTFIIAQGGTGQMLSLP 377 Query: 386 MNEFLQQSFKEIGIDIDFKVVELETLYTHWRKGAADEMNAGITANNIAYVTSDPLYAIVR 445 MNEFLQQSFKEIGIDIDFKVVELETLYTHWRKGAADEMNAGITANNIAYVTSDPLYAIVR Sbjct: 378 MNEFLQQSFKEIGIDIDFKVVELETLYTHWRKGAADEMNAGITANNIAYVTSDPLYAIVR 437 Query: 446 FFHSGQIAPVGVNWGGYKNPKVDALIDEAKQTFDSAKQDALLAQAHALIVDDAALVWVVH 505 FF S QIAP GVNWGGYKNPKVDALI EAKQTFD AKQD L+AQAHA +VDDA LVWVVH Sbjct: 438 FFASDQIAPTGVNWGGYKNPKVDALIAEAKQTFDPAKQDELIAQAHAAVVDDAVLVWVVH 497 Query: 506 DTNPHALSPKVKTFVQAQHWFQDLTQIGLE 535 DTNPHALSPKVKTFVQAQHWFQDLT IG E Sbjct: 498 DTNPHALSPKVKTFVQAQHWFQDLTTIGAE 527 >ref|NP_946115.1| oligopeptide ABC transporter periplasmic binding protein component [Rhodopseudomonas palustris CGA009] emb|CAE26206.1| possible oligopeptide ABC transporter, periplasmic binding protein component [Rhodopseudomonas palustris CGA009] Length = 532 Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/535 (87%), Positives = 500/535 (93%), Gaps = 3/535 (0%) Query: 1 MRARNSILMAAMALALTAGWPAMSAQAESIVRYGISMADIPLTTGQPDRGAGAYQFTAYT 60 MR ++S ++ A+ A +A +A+AE++VRYGISMADIPLTTGQPDRGAGAYQFT YT Sbjct: 1 MRLKSSWVLGALFAAASA---IGAARAETVVRYGISMADIPLTTGQPDRGAGAYQFTGYT 57 Query: 61 IYDPLVAWEMDVADRPGKLVPGLATEWKVDDNDKTKWRFTLRKGVKFHDGSDFNADAVIW 120 IYDPLVAWEM+V DRPGKLVPGLATEWKVDD DKTKWRFTLRKGVKFHDGSDFNADAVIW Sbjct: 58 IYDPLVAWEMNVGDRPGKLVPGLATEWKVDDADKTKWRFTLRKGVKFHDGSDFNADAVIW 117 Query: 121 NLDKVLNDKAPQFDKRQSAQVKTRLPSVASYAKIDDFTIEITTKTVDSFFPYQMLWFLVS 180 NLDKVLNDKAPQFDKRQSAQVKTRLPSV SYAKIDD T+EITTKTVDSFFPYQMLWFLVS Sbjct: 118 NLDKVLNDKAPQFDKRQSAQVKTRLPSVKSYAKIDDSTVEITTKTVDSFFPYQMLWFLVS 177 Query: 181 SPAQYEKLGKDWDKFASQPSGTGPFKLTKLVPRELAELTKNPDYWDKKRLAKVDKMILIP 240 SPAQYEK+GKDWDKFA+ PSGTGPFKLTKLVPRELAELTKN +YWDK RL K DK++LIP Sbjct: 178 SPAQYEKVGKDWDKFAANPSGTGPFKLTKLVPRELAELTKNDEYWDKSRLPKTDKLVLIP 237 Query: 241 MPEALTRTNALLAGQVDLIETPAPDAVPQLKAAGMRIVDNVTPHVWNYHLSVLPGSPWTD 300 MPEALTRTNALLAGQVDLIETPAPDAVPQLKAAGM+IVDNVTPHVWNYHLSVLPGSPWTD Sbjct: 238 MPEALTRTNALLAGQVDLIETPAPDAVPQLKAAGMKIVDNVTPHVWNYHLSVLPGSPWTD 297 Query: 301 IRLRKALNLAIDREAVVGLMNGLAKPAKGQVDPSSPWFGKPTFELKYDLAAARKLVEEAG 360 +RLRKALNLAIDREAVVGLMNGLAKPA GQVDPSSPWFG P+F++KYDLA A+KLV+EAG Sbjct: 298 VRLRKALNLAIDREAVVGLMNGLAKPAVGQVDPSSPWFGNPSFKIKYDLAEAKKLVKEAG 357 Query: 361 YSKDKPLKATFIIAQGGTGQMLSLPMNEFLQQSFKEIGIDIDFKVVELETLYTHWRKGAA 420 YS +KPLK TFIIA GGTGQMLSLPMNEFLQQSFKEIGID++FKVVELE LYT WRKGAA Sbjct: 358 YSPEKPLKTTFIIANGGTGQMLSLPMNEFLQQSFKEIGIDVEFKVVELEVLYTAWRKGAA 417 Query: 421 DEMNAGITANNIAYVTSDPLYAIVRFFHSGQIAPVGVNWGGYKNPKVDALIDEAKQTFDS 480 DE NAGITANNIAYVTSDPLYAIVRFFHSGQ+APVGVNWGGYKNPKVDALIDEAK TF+ Sbjct: 418 DESNAGITANNIAYVTSDPLYAIVRFFHSGQVAPVGVNWGGYKNPKVDALIDEAKTTFEP 477 Query: 481 AKQDALLAQAHALIVDDAALVWVVHDTNPHALSPKVKTFVQAQHWFQDLTQIGLE 535 KQD LLAQAH+LIVDDAALVWVVHDTNPHALSPKVK+FVQAQHWFQDLT IGL+ Sbjct: 478 KKQDELLAQAHSLIVDDAALVWVVHDTNPHALSPKVKSFVQAQHWFQDLTTIGLQ 532 >ref|YP_483848.1| extracellular solute-binding protein [Rhodopseudomonas palustris HaA2] gb|ABD04937.1| extracellular solute-binding protein, family 5 [Rhodopseudomonas palustris HaA2] Length = 533 Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/534 (86%), Positives = 498/534 (93%), Gaps = 3/534 (0%) Query: 2 RARNSILMAAMALALTAGWPAMSAQAESIVRYGISMADIPLTTGQPDRGAGAYQFTAYTI 61 R +++++AAM A PA +AES+VRYGISMADIPLTTGQPDRGAGAYQFT YTI Sbjct: 3 RFGSALVLAAMIAAAGVIGPA---RAESVVRYGISMADIPLTTGQPDRGAGAYQFTGYTI 59 Query: 62 YDPLVAWEMDVADRPGKLVPGLATEWKVDDNDKTKWRFTLRKGVKFHDGSDFNADAVIWN 121 YDPLVAWEM+VADRPGKLVPGLATEWKVD++DKTKWRFTLRKGVKFHDGSDFNADAVIWN Sbjct: 60 YDPLVAWEMNVADRPGKLVPGLATEWKVDESDKTKWRFTLRKGVKFHDGSDFNADAVIWN 119 Query: 122 LDKVLNDKAPQFDKRQSAQVKTRLPSVASYAKIDDFTIEITTKTVDSFFPYQMLWFLVSS 181 LDKVLN+KAPQFDKRQSAQVKTRLPSV SYAKIDD TIEITTK VDSFFPYQMLWFLVSS Sbjct: 120 LDKVLNEKAPQFDKRQSAQVKTRLPSVKSYAKIDDSTIEITTKAVDSFFPYQMLWFLVSS 179 Query: 182 PAQYEKLGKDWDKFASQPSGTGPFKLTKLVPRELAELTKNPDYWDKKRLAKVDKMILIPM 241 PAQY+K+GKDWDKFA+QPSGTGPFKLTKLVPRELAELT+N DYWDK RL K DK++L+PM Sbjct: 180 PAQYDKVGKDWDKFAAQPSGTGPFKLTKLVPRELAELTRNADYWDKARLPKTDKLVLVPM 239 Query: 242 PEALTRTNALLAGQVDLIETPAPDAVPQLKAAGMRIVDNVTPHVWNYHLSVLPGSPWTDI 301 PEALTRTNALLAGQVDLIETPAPDAVPQLK+AGM++VDNVTPHVWNYHLSVLPGSPWTD+ Sbjct: 240 PEALTRTNALLAGQVDLIETPAPDAVPQLKSAGMKLVDNVTPHVWNYHLSVLPGSPWTDV 299 Query: 302 RLRKALNLAIDREAVVGLMNGLAKPAKGQVDPSSPWFGKPTFELKYDLAAARKLVEEAGY 361 RLRKALNLAIDR+AVVGLMNGLAKPA GQVDPSSPWFGKPTF++KYDLA A++LV+EAGY Sbjct: 300 RLRKALNLAIDRDAVVGLMNGLAKPAVGQVDPSSPWFGKPTFKIKYDLAEAKRLVKEAGY 359 Query: 362 SKDKPLKATFIIAQGGTGQMLSLPMNEFLQQSFKEIGIDIDFKVVELETLYTHWRKGAAD 421 S +KPLKA FIIA GGTGQMLSLPMNEFLQQSFKEIGID++FKVVELE LYT WRKGAAD Sbjct: 360 SPEKPLKAKFIIATGGTGQMLSLPMNEFLQQSFKEIGIDVEFKVVELEVLYTAWRKGAAD 419 Query: 422 EMNAGITANNIAYVTSDPLYAIVRFFHSGQIAPVGVNWGGYKNPKVDALIDEAKQTFDSA 481 E AGITANNIAYVTSDPLYAIVRFFHSGQ+APVGVNWGGYKNPKVDALIDEAK FD Sbjct: 420 ESMAGITANNIAYVTSDPLYAIVRFFHSGQVAPVGVNWGGYKNPKVDALIDEAKTNFDPV 479 Query: 482 KQDALLAQAHALIVDDAALVWVVHDTNPHALSPKVKTFVQAQHWFQDLTQIGLE 535 KQD LLAQAHA IVDDAALVWVVHDTNPHALSPKVK+FVQAQHWFQDLT IGL+ Sbjct: 480 KQDELLAQAHAQIVDDAALVWVVHDTNPHALSPKVKSFVQAQHWFQDLTTIGLQ 533