BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0050.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_531099.1| binding-protein-dependent transport systems inn... 587 e-165 ref|YP_483846.1| binding-protein dependent transport system inne... 580 e-164 ref|NP_774560.1| ABC transporter permease protein [Bradyrhizobiu... 576 e-162 ref|YP_001203059.1| putative oligopeptide ABC transporter permea... 569 e-160 ref|YP_001242937.1| putative oligopeptide ABC transporter permea... 561 e-158 >ref|YP_531099.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB18] gb|ABD86780.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB18] Length = 317 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 292/317 (92%), Positives = 306/317 (96%) Query: 1 VFAYTSRRIVYVIPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRTAYGFDRP 60 +F Y +RRIVYVIPIV+SVALVCFLLVHITPGDPLVAVLPADASQELAAQLR AYGFDRP Sbjct: 1 MFIYIARRIVYVIPIVISVALVCFLLVHITPGDPLVAVLPADASQELAAQLRIAYGFDRP 60 Query: 61 LPVQFGLWLWRAIHGDLGNSIATGRPVLTEVMRAVGNTVMLAIAAAMIGFTLGLLFGLIA 120 LPVQFGLWLW+A+HGDLGNSIATGRPVL EV+RAVGNTV LAIAAA IGF+LGL FGLIA Sbjct: 61 LPVQFGLWLWKALHGDLGNSIATGRPVLAEVLRAVGNTVTLAIAAATIGFSLGLFFGLIA 120 Query: 121 GYFRDTWVDKVATSVAIAGVSLPHYWLGMVLVIIFSVQLNWLPAVGAGPGGSGAWAWDWE 180 GYFRDTWVDK+ATS+AIAGVS+PHYWLGMVLVIIFSVQLNWLPAVGAGPGGSG W WDWE Sbjct: 121 GYFRDTWVDKLATSIAIAGVSVPHYWLGMVLVIIFSVQLNWLPAVGAGPGGSGQWGWDWE 180 Query: 181 HLRYLVLPAITTSVIPMGIITRTVRALTGDILSQDFVEALRAKGLRETEVFRHVVKNAAP 240 HL+YLVLPAITTSVIPMGI+TRTVRALTGDILSQDFVEALRAKGLRET VFRHV+KNAAP Sbjct: 181 HLKYLVLPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLRETGVFRHVIKNAAP 240 Query: 241 TALAVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVLLN 300 TALAVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFV LN Sbjct: 241 TALAVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVFLN 300 Query: 301 LLVDIAQAAIDPRIKRS 317 L+VDIAQAAIDPRIKRS Sbjct: 301 LVVDIAQAAIDPRIKRS 317 >ref|YP_483846.1| binding-protein dependent transport system inner membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD04935.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 317 Score = 580 bits (1496), Expect = e-164, Method: Compositional matrix adjust. Identities = 286/314 (91%), Positives = 306/314 (97%) Query: 4 YTSRRIVYVIPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRTAYGFDRPLPV 63 Y +RRIVYVIPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLR AYGFDRPLPV Sbjct: 4 YIARRIVYVIPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRAAYGFDRPLPV 63 Query: 64 QFGLWLWRAIHGDLGNSIATGRPVLTEVMRAVGNTVMLAIAAAMIGFTLGLLFGLIAGYF 123 QFGLWLW+A+HGDLG SIATGRPVL+EV+RAVGNTV LAIAAA+IGF+LGL+FGL+AGYF Sbjct: 64 QFGLWLWKALHGDLGTSIATGRPVLSEVLRAVGNTVTLAIAAAIIGFSLGLMFGLLAGYF 123 Query: 124 RDTWVDKVATSVAIAGVSLPHYWLGMVLVIIFSVQLNWLPAVGAGPGGSGAWAWDWEHLR 183 RD+W+DKV+TS+AIAGVS+PHYWLGMVLVIIFSVQLNWLPAVGAGPGGSG W WDW HL+ Sbjct: 124 RDSWIDKVSTSIAIAGVSVPHYWLGMVLVIIFSVQLNWLPAVGAGPGGSGQWGWDWAHLK 183 Query: 184 YLVLPAITTSVIPMGIITRTVRALTGDILSQDFVEALRAKGLRETEVFRHVVKNAAPTAL 243 YLVLPAITTSVIPMGI+TRTVRALTGDILSQDFVEALRAKGLRET+VFRHV+KNAAPTAL Sbjct: 184 YLVLPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLRETQVFRHVLKNAAPTAL 243 Query: 244 AVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVLLNLLV 303 AVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFV LNL+V Sbjct: 244 AVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVFLNLVV 303 Query: 304 DIAQAAIDPRIKRS 317 DIAQAAIDPRIKR+ Sbjct: 304 DIAQAAIDPRIKRA 317 >ref|NP_774560.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53185.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 317 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 286/316 (90%), Positives = 302/316 (95%) Query: 1 VFAYTSRRIVYVIPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRTAYGFDRP 60 + AYT+RRIVYV+PIV+SVALVCFLLVHITPGDPLVAVLPADASQELAAQLR AYGFDRP Sbjct: 1 MLAYTARRIVYVVPIVISVALVCFLLVHITPGDPLVAVLPADASQELAAQLRAAYGFDRP 60 Query: 61 LPVQFGLWLWRAIHGDLGNSIATGRPVLTEVMRAVGNTVMLAIAAAMIGFTLGLLFGLIA 120 LPVQFGLWL RA+HGDLGNSIATGRPVL EVMRAVGNTV LAIAAA+IGFT+G+L GLIA Sbjct: 61 LPVQFGLWLLRALHGDLGNSIATGRPVLAEVMRAVGNTVTLAIAAAIIGFTMGILLGLIA 120 Query: 121 GYFRDTWVDKVATSVAIAGVSLPHYWLGMVLVIIFSVQLNWLPAVGAGPGGSGAWAWDWE 180 GYFR+TW+DKVATS AIAGVS+PHYWLGMVLVIIFSVQLNWLPAVGAGP GS +WAWDW Sbjct: 121 GYFRETWIDKVATSFAIAGVSVPHYWLGMVLVIIFSVQLNWLPAVGAGPNGSNSWAWDWA 180 Query: 181 HLRYLVLPAITTSVIPMGIITRTVRALTGDILSQDFVEALRAKGLRETEVFRHVVKNAAP 240 HL+YLVLPAITTSVIPMGI+TRTVRALTGDILSQDFVEALRAKGL ET VFRHV+KNAAP Sbjct: 181 HLKYLVLPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLHETGVFRHVIKNAAP 240 Query: 241 TALAVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVLLN 300 TALAVMGLQLGYMLGGSILIETVFSWPGSG LLNSAIFQRDLPLLQGTIL+LALFFV LN Sbjct: 241 TALAVMGLQLGYMLGGSILIETVFSWPGSGFLLNSAIFQRDLPLLQGTILILALFFVFLN 300 Query: 301 LLVDIAQAAIDPRIKR 316 LLVDIAQAAIDPRIKR Sbjct: 301 LLVDIAQAAIDPRIKR 316 >ref|YP_001203059.1| putative oligopeptide ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL74822.1| Putative Oligopeptide ABC transporter (permease protein) [Bradyrhizobium sp. ORS 278] Length = 317 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 278/316 (87%), Positives = 303/316 (95%) Query: 1 VFAYTSRRIVYVIPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRTAYGFDRP 60 + +Y +RR+VY IPI++ VALVCF+LVHITPGDPLVAVLPADASQELA QLR AYGFD+P Sbjct: 1 MLSYAARRMVYAIPIIIGVALVCFMLVHITPGDPLVAVLPADASQELAQQLRVAYGFDKP 60 Query: 61 LPVQFGLWLWRAIHGDLGNSIATGRPVLTEVMRAVGNTVMLAIAAAMIGFTLGLLFGLIA 120 LPVQFGLWLWRA++GDLG+SIATGRPVL EV+RAV NTV LAIAAA+IGF+LGL FGL+A Sbjct: 61 LPVQFGLWLWRAVNGDLGSSIATGRPVLAEVLRAVANTVTLAIAAAIIGFSLGLFFGLVA 120 Query: 121 GYFRDTWVDKVATSVAIAGVSLPHYWLGMVLVIIFSVQLNWLPAVGAGPGGSGAWAWDWE 180 GYFRDTWVDKVATS+AIAGVSLPHYWLGMVLVIIFSV+LNWLPAVGAGP GSGAWAWDW Sbjct: 121 GYFRDTWVDKVATSIAIAGVSLPHYWLGMVLVIIFSVELNWLPAVGAGPSGSGAWAWDWA 180 Query: 181 HLRYLVLPAITTSVIPMGIITRTVRALTGDILSQDFVEALRAKGLRETEVFRHVVKNAAP 240 HLR+L+LPAITTSVIPMGI+TRTVRALTGDILSQDFVEALRAKGLRE +VFRHV+KNAAP Sbjct: 181 HLRFLILPAITTSVIPMGIVTRTVRALTGDILSQDFVEALRAKGLRERQVFRHVLKNAAP 240 Query: 241 TALAVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVLLN 300 TALAVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLA+FFV+LN Sbjct: 241 TALAVMGLQLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLAMFFVILN 300 Query: 301 LLVDIAQAAIDPRIKR 316 L+VDIAQAAIDPRIKR Sbjct: 301 LVVDIAQAAIDPRIKR 316 >ref|YP_001242937.1| putative oligopeptide ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ39031.1| Putative Oligopeptide ABC transporter (permease protein) [Bradyrhizobium sp. BTAi1] Length = 310 Score = 561 bits (1445), Expect = e-158, Method: Compositional matrix adjust. Identities = 275/308 (89%), Positives = 298/308 (96%) Query: 9 IVYVIPIVLSVALVCFLLVHITPGDPLVAVLPADASQELAAQLRTAYGFDRPLPVQFGLW 68 +VY IPI++ VALVCF+LVHITPGDPLVAVLPADASQELA QLR AYGFD+PLPVQFGLW Sbjct: 1 MVYAIPIIIGVALVCFMLVHITPGDPLVAVLPADASQELAQQLRVAYGFDKPLPVQFGLW 60 Query: 69 LWRAIHGDLGNSIATGRPVLTEVMRAVGNTVMLAIAAAMIGFTLGLLFGLIAGYFRDTWV 128 LWRA++GDLG+SIATGRPVL EV+RAV NTV LAIAAA+IGF+LGL FGLIAGYFRD+W+ Sbjct: 61 LWRAVNGDLGSSIATGRPVLAEVLRAVSNTVTLAIAAAIIGFSLGLFFGLIAGYFRDSWI 120 Query: 129 DKVATSVAIAGVSLPHYWLGMVLVIIFSVQLNWLPAVGAGPGGSGAWAWDWEHLRYLVLP 188 DKVATS+AIAGVSLPHYWLGMVLVIIFSV+LNWLPAVGAGP GSGAW+WDW HLR+L+LP Sbjct: 121 DKVATSIAIAGVSLPHYWLGMVLVIIFSVELNWLPAVGAGPSGSGAWSWDWAHLRFLILP 180 Query: 189 AITTSVIPMGIITRTVRALTGDILSQDFVEALRAKGLRETEVFRHVVKNAAPTALAVMGL 248 AITTSVIPMGIITRTVRALTGDILSQDFVEALRAKGLRET+VFRHV+KNAAPTALAVMGL Sbjct: 181 AITTSVIPMGIITRTVRALTGDILSQDFVEALRAKGLRETQVFRHVLKNAAPTALAVMGL 240 Query: 249 QLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLALFFVLLNLLVDIAQA 308 QLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLA+FFV+LNL+VDIAQA Sbjct: 241 QLGYMLGGSILIETVFSWPGSGLLLNSAIFQRDLPLLQGTILVLAMFFVILNLVVDIAQA 300 Query: 309 AIDPRIKR 316 AIDPRIKR Sbjct: 301 AIDPRIKR 308