BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0049.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_531098.1| binding-protein-dependent transport systems inn... 543 e-152 ref|YP_483845.1| binding-protein dependent transport system inne... 528 e-148 ref|NP_774559.1| ABC transporter permease protein [Bradyrhizobiu... 512 e-143 ref|YP_004107175.1| binding-protein-dependent transporter inner ... 511 e-143 ref|NP_946112.1| putative oligopeptide ABC transporter permease ... 502 e-140 >ref|YP_531098.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB18] gb|ABD86779.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB18] Length = 295 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 271/295 (91%), Positives = 285/295 (96%) Query: 1 MSAMSDTALQAAPTTKARGYWATVARRIRRDKVSMACAIILVLIFASALLAPWLHLADPY 60 M+ M+DTALQ+AP+T ARGYWATV RR+RRDKV+MACA+IL+LIF SAL+APWL LADPY Sbjct: 1 MTVMTDTALQSAPSTPARGYWATVGRRLRRDKVAMACALILLLIFVSALVAPWLGLADPY 60 Query: 61 QGSMIRRLRHIGTPGYLLGTDELGRDMLARLIYGGRLSLVIGILPVIFAFVIGTSLGLVA 120 QGSMIRRL+ IGTP YLLGTDELGRDMLARL+YGGRLSL+IGILPV+ AF IGTSLGLVA Sbjct: 61 QGSMIRRLKPIGTPNYLLGTDELGRDMLARLVYGGRLSLLIGILPVVLAFGIGTSLGLVA 120 Query: 121 GYVGGKLNTAIMRTVDVFYAFPSVLLAIAISGALGAGITNSIVSLTIVFVPQITRVAESV 180 GYVGGKLNTAIMRTVDVFYAFPSVLLAIAISGALGAGITNSIVSLT+VFVPQITRVAESV Sbjct: 121 GYVGGKLNTAIMRTVDVFYAFPSVLLAIAISGALGAGITNSIVSLTVVFVPQITRVAESV 180 Query: 181 TTGVRNMDFVEAARASGAGPFTIMRVHMLGNVLGPIFVYATGLISVSMILAAGLSFLGLG 240 TTGVRNMDFVEAARASGAG FTIMRVHMLGNVLGPIFVYATGLISVSMILAAGLSFLGLG Sbjct: 181 TTGVRNMDFVEAARASGAGAFTIMRVHMLGNVLGPIFVYATGLISVSMILAAGLSFLGLG 240 Query: 241 TKPPEPEWGLMLNTLRTAIYVNPWVAALPGAMIFAVSICFNLLSDGMRSAMDIRN 295 TKPPEPEWGLMLNTLRTAIYVNPWVAALPGAMIFAVSICFNLLSDGMRSAMDIRN Sbjct: 241 TKPPEPEWGLMLNTLRTAIYVNPWVAALPGAMIFAVSICFNLLSDGMRSAMDIRN 295 >ref|YP_483845.1| binding-protein dependent transport system inner membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD04934.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 295 Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust. Identities = 260/295 (88%), Positives = 282/295 (95%) Query: 1 MSAMSDTALQAAPTTKARGYWATVARRIRRDKVSMACAIILVLIFASALLAPWLHLADPY 60 M+A+++TA+Q AP ARGYW+TV RR+ RDKVS+ACAI+L+LI SA+ AP+LHLADPY Sbjct: 1 MTAITETAVQTAPAGNARGYWSTVGRRLSRDKVSIACAIVLLLILLSAIFAPYLHLADPY 60 Query: 61 QGSMIRRLRHIGTPGYLLGTDELGRDMLARLIYGGRLSLVIGILPVIFAFVIGTSLGLVA 120 QGSMIRRL+ IGTP Y LG+DELGRDMLARLIYGGRLSL+IGILPV+ AFV+GTSLGLVA Sbjct: 61 QGSMIRRLKPIGTPNYPLGSDELGRDMLARLIYGGRLSLLIGILPVVLAFVLGTSLGLVA 120 Query: 121 GYVGGKLNTAIMRTVDVFYAFPSVLLAIAISGALGAGITNSIVSLTIVFVPQITRVAESV 180 GYVGGK+NTAIMRT+DVFYAFPSVLLAIAISGALGAGITNSIVSLT+VF+PQITRVAESV Sbjct: 121 GYVGGKVNTAIMRTIDVFYAFPSVLLAIAISGALGAGITNSIVSLTVVFLPQITRVAESV 180 Query: 181 TTGVRNMDFVEAARASGAGPFTIMRVHMLGNVLGPIFVYATGLISVSMILAAGLSFLGLG 240 TTGVRNMDFVEAARASGAGPFTIMRVHMLGNVLGPIFVYATGLISVSMILAAGLSFLGLG Sbjct: 181 TTGVRNMDFVEAARASGAGPFTIMRVHMLGNVLGPIFVYATGLISVSMILAAGLSFLGLG 240 Query: 241 TKPPEPEWGLMLNTLRTAIYVNPWVAALPGAMIFAVSICFNLLSDGMRSAMDIRN 295 TKPPEPEWGLMLNTLRTAIYVNPWVAALPGAMIFAVSICFNLLSDG+RSAMDIRN Sbjct: 241 TKPPEPEWGLMLNTLRTAIYVNPWVAALPGAMIFAVSICFNLLSDGLRSAMDIRN 295 >ref|NP_774559.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53184.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 300 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 258/281 (91%), Positives = 268/281 (95%) Query: 15 TKARGYWATVARRIRRDKVSMACAIILVLIFASALLAPWLHLADPYQGSMIRRLRHIGTP 74 TKARGYWATV RRI RDKVSMACA++L+LIF SA+LAPWL L DPY+GSMIRRLRHIGT Sbjct: 20 TKARGYWATVGRRIVRDKVSMACALVLLLIFLSAILAPWLGLEDPYKGSMIRRLRHIGTV 79 Query: 75 GYLLGTDELGRDMLARLIYGGRLSLVIGILPVIFAFVIGTSLGLVAGYVGGKLNTAIMRT 134 GY LGTDELGRDMLARLIYGGRLSLVIGILPVI AF IGTSLG++AGYVGGKLNTAIMRT Sbjct: 80 GYPLGTDELGRDMLARLIYGGRLSLVIGILPVILAFCIGTSLGIIAGYVGGKLNTAIMRT 139 Query: 135 VDVFYAFPSVLLAIAISGALGAGITNSIVSLTIVFVPQITRVAESVTTGVRNMDFVEAAR 194 VDVFYAFPSVLLAIAISGALGAGI NSIV+LTIVFVPQITRVAESVTTGVRNMDFVEAAR Sbjct: 140 VDVFYAFPSVLLAIAISGALGAGILNSIVALTIVFVPQITRVAESVTTGVRNMDFVEAAR 199 Query: 195 ASGAGPFTIMRVHMLGNVLGPIFVYATGLISVSMILAAGLSFLGLGTKPPEPEWGLMLNT 254 ASGAG FTIMRVH+LGNVLG IFVYAT LISVSMILAAGLSFLGLGTKPPEPEWGLMLNT Sbjct: 200 ASGAGAFTIMRVHILGNVLGAIFVYATSLISVSMILAAGLSFLGLGTKPPEPEWGLMLNT 259 Query: 255 LRTAIYVNPWVAALPGAMIFAVSICFNLLSDGMRSAMDIRN 295 LRTAIYVNPWVAALPGAMIFAVSICFNLLSDG+RSAMDIRN Sbjct: 260 LRTAIYVNPWVAALPGAMIFAVSICFNLLSDGLRSAMDIRN 300 >ref|YP_004107175.1| binding-protein-dependent transporter inner membrane component [Rhodopseudomonas palustris DX-1] gb|ADU42442.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris DX-1] Length = 296 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 253/291 (86%), Positives = 269/291 (92%) Query: 5 SDTALQAAPTTKARGYWATVARRIRRDKVSMACAIILVLIFASALLAPWLHLADPYQGSM 64 +D A Q AP KARGYWA V RR+ RDK++M C +IL+LI +A+ APWLHLADPYQGSM Sbjct: 6 ADAAPQTAPAGKARGYWANVGRRLIRDKIAMTCGVILLLIVLAAVFAPWLHLADPYQGSM 65 Query: 65 IRRLRHIGTPGYLLGTDELGRDMLARLIYGGRLSLVIGILPVIFAFVIGTSLGLVAGYVG 124 IRRL+ IGT Y LGTDELGRDMLARL+YGGRLSL IG+LPVIFAF+IGTSLGL+AGYVG Sbjct: 66 IRRLKPIGTANYPLGTDELGRDMLARLVYGGRLSLFIGVLPVIFAFMIGTSLGLIAGYVG 125 Query: 125 GKLNTAIMRTVDVFYAFPSVLLAIAISGALGAGITNSIVSLTIVFVPQITRVAESVTTGV 184 GK+NTAIMRT+DVFYAFPSVLLAIAISGALGAGITNSIVSLT+VFVPQITRVAESVTT V Sbjct: 126 GKVNTAIMRTIDVFYAFPSVLLAIAISGALGAGITNSIVSLTVVFVPQITRVAESVTTSV 185 Query: 185 RNMDFVEAARASGAGPFTIMRVHMLGNVLGPIFVYATGLISVSMILAAGLSFLGLGTKPP 244 RNMDFVEAARASGAG FTIMRVHMLGNVLGPIFVYATGLISVSMILAAGLSFLGLGTKPP Sbjct: 186 RNMDFVEAARASGAGAFTIMRVHMLGNVLGPIFVYATGLISVSMILAAGLSFLGLGTKPP 245 Query: 245 EPEWGLMLNTLRTAIYVNPWVAALPGAMIFAVSICFNLLSDGMRSAMDIRN 295 EPEWGLMLNTLRTAIYVNPWVAALPG MIFAVSICFNLLSD MRSAMDIRN Sbjct: 246 EPEWGLMLNTLRTAIYVNPWVAALPGVMIFAVSICFNLLSDSMRSAMDIRN 296 >ref|NP_946112.1| putative oligopeptide ABC transporter permease [Rhodopseudomonas palustris CGA009] emb|CAE26203.1| putative oligopeptide ABC transporter, permease component [Rhodopseudomonas palustris CGA009] Length = 301 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 260/291 (89%), Positives = 271/291 (93%) Query: 5 SDTALQAAPTTKARGYWATVARRIRRDKVSMACAIILVLIFASALLAPWLHLADPYQGSM 64 SD A Q AP KARGYWA V RR+ RDK+++AC IIL+LI +A+LAPWLHLADPYQGSM Sbjct: 11 SDAAPQTAPAGKARGYWANVGRRLLRDKIALACGIILLLIVLAAVLAPWLHLADPYQGSM 70 Query: 65 IRRLRHIGTPGYLLGTDELGRDMLARLIYGGRLSLVIGILPVIFAFVIGTSLGLVAGYVG 124 IRRL+ IGT Y LGTDELGRDMLARLIYGGRLSL IG+LPVIFAFVIGTSLGLVAGYVG Sbjct: 71 IRRLKPIGTANYPLGTDELGRDMLARLIYGGRLSLFIGVLPVIFAFVIGTSLGLVAGYVG 130 Query: 125 GKLNTAIMRTVDVFYAFPSVLLAIAISGALGAGITNSIVSLTIVFVPQITRVAESVTTGV 184 GK+NTAIMRTVDVFYAFPSVLLAIAISGALGAGITNSIVSLT+VFVPQITRVAESVTT V Sbjct: 131 GKVNTAIMRTVDVFYAFPSVLLAIAISGALGAGITNSIVSLTVVFVPQITRVAESVTTSV 190 Query: 185 RNMDFVEAARASGAGPFTIMRVHMLGNVLGPIFVYATGLISVSMILAAGLSFLGLGTKPP 244 RNMDFVEAARASGAG FTIMRVHMLGNVLGPIFVYATGLISVSMILAAGLSFLGLGTKPP Sbjct: 191 RNMDFVEAARASGAGAFTIMRVHMLGNVLGPIFVYATGLISVSMILAAGLSFLGLGTKPP 250 Query: 245 EPEWGLMLNTLRTAIYVNPWVAALPGAMIFAVSICFNLLSDGMRSAMDIRN 295 EPEWGLMLNTLRTAIYVNPWVAALPG MIFAVSICFNLLSD MRSAMDIRN Sbjct: 251 EPEWGLMLNTLRTAIYVNPWVAALPGVMIFAVSICFNLLSDSMRSAMDIRN 301