BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0047.p         (69 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_483843.1| hypothetical protein RPB_0221 [Rhodopseudomonas...    91   8e-17
ref|YP_001203062.1| hypothetical protein BRADO0907 [Bradyrhizobi...    84   5e-15
ref|YP_001242934.1| hypothetical protein BBta_7146 [Bradyrhizobi...    84   8e-15
ref|YP_531096.1| hypothetical protein RPC_1214 [Rhodopseudomonas...    82   3e-14
ref|NP_946110.1| hypothetical protein RPA0757 [Rhodopseudomonas ...    82   4e-14

>ref|YP_483843.1| hypothetical protein RPB_0221 [Rhodopseudomonas palustris HaA2]
 gb|ABD04932.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 65

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 50/62 (80%)

Query: 1  MTRPTAKDVKVIAHVADVPADDDVATRIANSIGPAFDGFAPISGTLPFDLEPASFLLAQI 60
          MTRP    +K +A VA VP  D+VA RIANSIGPAFDGFAPI+G+LPFDLEPA+FL+AQ 
Sbjct: 1  MTRPVPDQIKAMAEVAGVPVSDEVAARIANSIGPAFDGFAPIAGSLPFDLEPATFLVAQT 60

Query: 61 AQ 62
           +
Sbjct: 61 GK 62


>ref|YP_001203062.1| hypothetical protein BRADO0907 [Bradyrhizobium sp. ORS 278]
 emb|CAL74825.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 65

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 49/59 (83%)

Query: 1  MTRPTAKDVKVIAHVADVPADDDVATRIANSIGPAFDGFAPISGTLPFDLEPASFLLAQ 59
          MTRPT + V+ IA  + +P D +VATRI++SIGPAFD FA I+GTLPFDLEPAS++LAQ
Sbjct: 1  MTRPTPQQVQAIAEASGLPVDKEVATRISDSIGPAFDNFAAIAGTLPFDLEPASYVLAQ 59


>ref|YP_001242934.1| hypothetical protein BBta_7146 [Bradyrhizobium sp. BTAi1]
 gb|ABQ39028.1| hypothetical protein BBta_7146 [Bradyrhizobium sp. BTAi1]
          Length = 65

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 49/59 (83%)

Query: 1  MTRPTAKDVKVIAHVADVPADDDVATRIANSIGPAFDGFAPISGTLPFDLEPASFLLAQ 59
          MTRPT + V  IA  + +P D +VATRI++SIGPAFDGFA I+GTLPFDLEP+S+++AQ
Sbjct: 1  MTRPTPQQVSAIAEASGLPVDKEVATRISDSIGPAFDGFAAIAGTLPFDLEPSSYVVAQ 59


>ref|YP_531096.1| hypothetical protein RPC_1214 [Rhodopseudomonas palustris BisB18]
 gb|ABD86777.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisB18]
          Length = 65

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 47/58 (81%)

Query: 2  TRPTAKDVKVIAHVADVPADDDVATRIANSIGPAFDGFAPISGTLPFDLEPASFLLAQ 59
          T+P +  +  +A VA VP  ++VA RIANSIGPAF+GFAPI+GTLPFDLEPASF++ Q
Sbjct: 3  TKPDSATINAMAAVAGVPVSNEVAARIANSIGPAFEGFAPITGTLPFDLEPASFVVTQ 60


>ref|NP_946110.1| hypothetical protein RPA0757 [Rhodopseudomonas palustris CGA009]
 emb|CAE26201.1| hypothetical protein RPA0757 [Rhodopseudomonas palustris CGA009]
          Length = 64

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 1  MTRPTAKDVKVIAHVADVPADDDVATRIANSIGPAFDGFAPISGTLPFDLEPASFLLAQ 59
          M +P    +K +A +A +P DD+VA RIANSIGPAFDGF PI+GTLPFDLEP+++++AQ
Sbjct: 1  MIKPDPATIKTMAAIAGLPVDDEVAARIANSIGPAFDGFTPIAGTLPFDLEPSTYVVAQ 59