BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0046.p (470 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774557.1| glutamyl-tRNA(Gln) amidotransferase [Bradyrhizo... 744 0.0 ref|YP_001242933.1| aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe... 714 0.0 ref|YP_001203063.1| putative glutamyl-tRNA(Gln) amidotransferase... 707 0.0 ref|YP_483842.1| amidase [Rhodopseudomonas palustris HaA2] >gi|8... 697 0.0 ref|YP_531095.1| amidase [Rhodopseudomonas palustris BisB18] >gi... 690 0.0 >ref|NP_774557.1| glutamyl-tRNA(Gln) amidotransferase [Bradyrhizobium japonicum USDA 110] dbj|BAC53182.1| bll7917 [Bradyrhizobium japonicum USDA 110] Length = 471 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/469 (82%), Positives = 423/469 (90%) Query: 1 MSSEPALMTLTAVAKAIADKKVSSHEVTRAVLHRIAEWQPRLNAYMAVESEQALAAATEA 60 MS+EPALMTLT VA+AIA K+VSSHEVTRA+LHRIA+WQP LNA+M++E+E AL AA A Sbjct: 1 MSTEPALMTLTEVARAIAMKQVSSHEVTRALLHRIAQWQPHLNAFMSIEAEAALKAAEAA 60 Query: 61 DAALAKGNSRGALHGVPLAHKDMYYDAGKVVTCGSLIRRDFVPKTTATALQRLKDAGQVR 120 DA LAKG RG LHGVPLAHKDMYYDAGKV TCGSLIRRDFV TT+TALQRLKDAGQVR Sbjct: 61 DAELAKGEVRGPLHGVPLAHKDMYYDAGKVSTCGSLIRRDFVATTTSTALQRLKDAGQVR 120 Query: 121 LGSLQMVEFAYGPTGHNVHYGAVRNPWNTEHITGGSSSGSGSAVAARLTFAALGSDTGGS 180 LG+L + EFAYGPTGHN HYG VRNPWN HITGGSSSGSGSAVAARLTFAALGSDTGGS Sbjct: 121 LGTLHLAEFAYGPTGHNAHYGPVRNPWNVAHITGGSSSGSGSAVAARLTFAALGSDTGGS 180 Query: 181 VRMPAHFCGVTGLKTTVGRVSRAGAMPLSQSLDTVGPLAQTAEDCALLLGLMAGADPEDL 240 +RMPAHFCGVTGLKTT RVSRAGAMPLSQSLDTVGPLA+TAEDCALLL LMAG DPED Sbjct: 181 IRMPAHFCGVTGLKTTWSRVSRAGAMPLSQSLDTVGPLARTAEDCALLLALMAGPDPEDS 240 Query: 241 TASTQPVPDYLAATKQSLKGLKIGVPTAFYVDDLDPEVARILDETVATLKKEGAEIVKVE 300 TAS +P+ DY+ ATK SLKGLKIGVP +FYVDDLD EVAR+LDET+A LK+EGA+IVKVE Sbjct: 241 TASHEPLSDYVGATKGSLKGLKIGVPASFYVDDLDSEVARVLDETIAVLKREGADIVKVE 300 Query: 301 LPDQRQLSSASQLVLAVEAAAFHKRWMIERPQDYGAQVLMRLQNGLTIPAVTYLEAMRWR 360 LPDQRQLSSASQLVLA EAAAFHKRWMIERPQDYG QVLMRLQNGL +PA+TYLEAMRWR Sbjct: 301 LPDQRQLSSASQLVLAAEAAAFHKRWMIERPQDYGPQVLMRLQNGLAVPAITYLEAMRWR 360 Query: 361 GPALAAHNAAVNGVDAVIAPSSPVPAPTIAESDVGNGPGADAVLQRLTRFTRPVNYLGLP 420 GPALAAHNAA GVDA+IAP+SPVPAPTI ESDVG GP A A++QRLT FTRPVN+LGLP Sbjct: 361 GPALAAHNAATAGVDAIIAPASPVPAPTIEESDVGGGPNAPAMVQRLTLFTRPVNFLGLP 420 Query: 421 SLSIPSGFTKTGLPVGMQLIGRSFEEAVLLRIGAAFQRATDFHARVPKL 469 SL++PSGFTK+GLPVGMQLIGRSF+EA LL IGAAFQR TD+H RVPKL Sbjct: 421 SLTVPSGFTKSGLPVGMQLIGRSFDEATLLTIGAAFQRVTDYHDRVPKL 469 >ref|YP_001242933.1| aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A [Bradyrhizobium sp. BTAi1] gb|ABQ39027.1| aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A [Bradyrhizobium sp. BTAi1] Length = 470 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/469 (79%), Positives = 412/469 (87%) Query: 1 MSSEPALMTLTAVAKAIADKKVSSHEVTRAVLHRIAEWQPRLNAYMAVESEQALAAATEA 60 MS+EPALMTLT VAKAIA+KK+SS EVTR+ LHRIAEWQP+LNA+MA+ESE AL AA EA Sbjct: 1 MSTEPALMTLTEVAKAIAEKKLSSVEVTRSCLHRIAEWQPKLNAFMAIESEPALKAAAEA 60 Query: 61 DAALAKGNSRGALHGVPLAHKDMYYDAGKVVTCGSLIRRDFVPKTTATALQRLKDAGQVR 120 DAALAK +G LHGVPLAHKDMYY+AG V TCGSLIRRDFV TT+TALQRLKDAG +R Sbjct: 61 DAALAKDGPKGPLHGVPLAHKDMYYEAGHVSTCGSLIRRDFVATTTSTALQRLKDAGAIR 120 Query: 121 LGSLQMVEFAYGPTGHNVHYGAVRNPWNTEHITGGSSSGSGSAVAARLTFAALGSDTGGS 180 LG+LQM EFAYGPTGHN HYG V NPW ++TGGSSSGSGSAV ARLTFAALGSDTGGS Sbjct: 121 LGTLQMAEFAYGPTGHNAHYGPVHNPWKLGYVTGGSSSGSGSAVGARLTFAALGSDTGGS 180 Query: 181 VRMPAHFCGVTGLKTTVGRVSRAGAMPLSQSLDTVGPLAQTAEDCALLLGLMAGADPEDL 240 +RMPA+FCGVTGLK T GRVSRAGAMPLSQSLDTVGPLAQTAEDCAL+LGLMAG DPED Sbjct: 181 IRMPANFCGVTGLKVTWGRVSRAGAMPLSQSLDTVGPLAQTAEDCALMLGLMAGPDPEDP 240 Query: 241 TASTQPVPDYLAATKQSLKGLKIGVPTAFYVDDLDPEVARILDETVATLKKEGAEIVKVE 300 TAS PV DY+AAT+ S+KGLKIGVP AFYVDDLDPEVAR LD T+ LK EGA++V VE Sbjct: 241 TASHAPVQDYVAATQASIKGLKIGVPKAFYVDDLDPEVARCLDATIGLLKTEGADVVSVE 300 Query: 301 LPDQRQLSSASQLVLAVEAAAFHKRWMIERPQDYGAQVLMRLQNGLTIPAVTYLEAMRWR 360 LPDQRQL++A QLVLAVEAAAFHKRWMIERPQDYG QVLMRLQN L + VTYLEA+RWR Sbjct: 301 LPDQRQLTAACQLVLAVEAAAFHKRWMIERPQDYGPQVLMRLQNALAVSGVTYLEALRWR 360 Query: 361 GPALAAHNAAVNGVDAVIAPSSPVPAPTIAESDVGNGPGADAVLQRLTRFTRPVNYLGLP 420 G ALAAH AA G+DAVIAP SP+ P+IAESDVG PGA+AV+QR+TRFTRPVNYLGLP Sbjct: 361 GAALAAHVAATQGIDAVIAPVSPLVTPSIAESDVGGVPGAEAVIQRITRFTRPVNYLGLP 420 Query: 421 SLSIPSGFTKTGLPVGMQLIGRSFEEAVLLRIGAAFQRATDFHARVPKL 469 SL+IP+GFT TGLPVGMQLIGRSF+EA +L IGAAFQRATDFHARVP L Sbjct: 421 SLAIPTGFTATGLPVGMQLIGRSFDEATILTIGAAFQRATDFHARVPTL 469 >ref|YP_001203063.1| putative glutamyl-tRNA(Gln) amidotransferase subunit A [Bradyrhizobium sp. ORS 278] emb|CAL74826.1| putative Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) [Bradyrhizobium sp. ORS 278] Length = 470 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/470 (78%), Positives = 411/470 (87%) Query: 1 MSSEPALMTLTAVAKAIADKKVSSHEVTRAVLHRIAEWQPRLNAYMAVESEQALAAATEA 60 MS+EPALMTLT VAKAIA+KK+SS +VTR+ LHRIA+WQP+LNA+MA+ESE AL AA EA Sbjct: 1 MSTEPALMTLTEVAKAIAEKKLSSVDVTRSCLHRIAQWQPKLNAFMAIESEPALKAAAEA 60 Query: 61 DAALAKGNSRGALHGVPLAHKDMYYDAGKVVTCGSLIRRDFVPKTTATALQRLKDAGQVR 120 DAALAK +G LHGVPLAHKDMYY+AG V TCGSLIRRDFV TT+TALQRLKDAG +R Sbjct: 61 DAALAKDGPKGPLHGVPLAHKDMYYEAGHVSTCGSLIRRDFVATTTSTALQRLKDAGAIR 120 Query: 121 LGSLQMVEFAYGPTGHNVHYGAVRNPWNTEHITGGSSSGSGSAVAARLTFAALGSDTGGS 180 LG+LQM EFAYGPTGHN HYG V NPW ++TGGSSSGSGSAV ARLTFAALGSDTGGS Sbjct: 121 LGTLQMAEFAYGPTGHNAHYGPVHNPWKLGYVTGGSSSGSGSAVGARLTFAALGSDTGGS 180 Query: 181 VRMPAHFCGVTGLKTTVGRVSRAGAMPLSQSLDTVGPLAQTAEDCALLLGLMAGADPEDL 240 +RMPA+FCGVTGLK T GRVSRAGAMPLSQSLDTVGPLAQTAEDCALLLGLMAG DPED Sbjct: 181 IRMPANFCGVTGLKVTWGRVSRAGAMPLSQSLDTVGPLAQTAEDCALLLGLMAGPDPEDP 240 Query: 241 TASTQPVPDYLAATKQSLKGLKIGVPTAFYVDDLDPEVARILDETVATLKKEGAEIVKVE 300 TAS V DY+AAT+ S+KGLKIGVP +FYVDDLDPEVAR LD + LK EGA++V+VE Sbjct: 241 TASAAQVQDYVAATQSSIKGLKIGVPKSFYVDDLDPEVARCLDAAITVLKTEGADVVQVE 300 Query: 301 LPDQRQLSSASQLVLAVEAAAFHKRWMIERPQDYGAQVLMRLQNGLTIPAVTYLEAMRWR 360 LPDQRQL++A QLVLAVEAAAFHKRWMIERPQDYG QVLMRLQN L + V YLEA+RWR Sbjct: 301 LPDQRQLTAACQLVLAVEAAAFHKRWMIERPQDYGPQVLMRLQNALAVSGVAYLEALRWR 360 Query: 361 GPALAAHNAAVNGVDAVIAPSSPVPAPTIAESDVGNGPGADAVLQRLTRFTRPVNYLGLP 420 G ALAAH AA GVDA+IAP SP+ P+IAESDVG PGA+AV+QR+TRFTRPVNYLGLP Sbjct: 361 GAALAAHVAATAGVDAIIAPVSPLVTPSIAESDVGGAPGAEAVIQRITRFTRPVNYLGLP 420 Query: 421 SLSIPSGFTKTGLPVGMQLIGRSFEEAVLLRIGAAFQRATDFHARVPKLA 470 SL+IP+GFT TGLPVGMQLIGRSF+EA +L IGAAFQRATDFHARVP L+ Sbjct: 421 SLAIPTGFTATGLPVGMQLIGRSFDEATILTIGAAFQRATDFHARVPTLS 470 >ref|YP_483842.1| amidase [Rhodopseudomonas palustris HaA2] gb|ABD04931.1| aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A [Rhodopseudomonas palustris HaA2] Length = 471 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/466 (76%), Positives = 414/466 (88%) Query: 2 SSEPALMTLTAVAKAIADKKVSSHEVTRAVLHRIAEWQPRLNAYMAVESEQALAAATEAD 61 +++PAL++LT +A+AIA K VSS EVT+A L RIA QPRLNA+M++E++ ALAAA AD Sbjct: 3 TTDPALLSLTEIAQAIAAKTVSSREVTQACLDRIAAQQPRLNAFMSIEADSALAAADAAD 62 Query: 62 AALAKGNSRGALHGVPLAHKDMYYDAGKVVTCGSLIRRDFVPKTTATALQRLKDAGQVRL 121 A LA+G+SRG LHGVPLAHKDMYY+ G VVTCGS IR+D V TT+TALQRLKDAG VRL Sbjct: 63 AELARGDSRGVLHGVPLAHKDMYYETGHVVTCGSKIRQDDVATTTSTALQRLKDAGTVRL 122 Query: 122 GSLQMVEFAYGPTGHNVHYGAVRNPWNTEHITGGSSSGSGSAVAARLTFAALGSDTGGSV 181 GSLQM EFAYGPTGHN H+G V NPWN +HITGGSSSGSG+AVAARLTFAALGSDTGGS+ Sbjct: 123 GSLQMSEFAYGPTGHNAHFGPVHNPWNIDHITGGSSSGSGAAVAARLTFAALGSDTGGSI 182 Query: 182 RMPAHFCGVTGLKTTVGRVSRAGAMPLSQSLDTVGPLAQTAEDCALLLGLMAGADPEDLT 241 RMPAHFCGVTGLKTTVGRVSRAGAMPLSQSLDTVGPLA+TA+DCALLLGLMAGADPEDLT Sbjct: 183 RMPAHFCGVTGLKTTVGRVSRAGAMPLSQSLDTVGPLARTAQDCALLLGLMAGADPEDLT 242 Query: 242 ASTQPVPDYLAATKQSLKGLKIGVPTAFYVDDLDPEVARILDETVATLKKEGAEIVKVEL 301 +PDYLAAT ++G +IG+P AFYVDDLDPEVAR+LDET+ATL+ EGA +V+V+L Sbjct: 243 CIAGELPDYLAATHAPMRGARIGIPKAFYVDDLDPEVARVLDETIATLRAEGASVVEVDL 302 Query: 302 PDQRQLSSASQLVLAVEAAAFHKRWMIERPQDYGAQVLMRLQNGLTIPAVTYLEAMRWRG 361 PDQ QL++A QLVLAVEAAAFHKRWMIERPQDYG QVLMRLQNGL +PA++YLEAMRWRG Sbjct: 303 PDQPQLTAACQLVLAVEAAAFHKRWMIERPQDYGPQVLMRLQNGLGVPAISYLEAMRWRG 362 Query: 362 PALAAHNAAVNGVDAVIAPSSPVPAPTIAESDVGNGPGADAVLQRLTRFTRPVNYLGLPS 421 PAL+AH AAV VDAV+AP +PVPAPTIAESDVG+ A+AV+QRLTRFTRP+NYLGLPS Sbjct: 363 PALSAHLAAVADVDAVLAPVAPVPAPTIAESDVGSSLNAEAVIQRLTRFTRPINYLGLPS 422 Query: 422 LSIPSGFTKTGLPVGMQLIGRSFEEAVLLRIGAAFQRATDFHARVP 467 L+IP+GF+ +GLP+G+QLIGR F+EA++LRIGAAFQR T+FH ++P Sbjct: 423 LAIPTGFSASGLPIGLQLIGRPFDEAMILRIGAAFQRVTEFHNKMP 468 >ref|YP_531095.1| amidase [Rhodopseudomonas palustris BisB18] gb|ABD86776.1| aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A [Rhodopseudomonas palustris BisB18] Length = 471 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/468 (76%), Positives = 411/468 (87%) Query: 3 SEPALMTLTAVAKAIADKKVSSHEVTRAVLHRIAEWQPRLNAYMAVESEQALAAATEADA 62 ++P L++LT +A+AIA +K SS E T+A L+RIA QP+LNA++A+E ++ALAAA ADA Sbjct: 4 TDPTLLSLTEIAQAIAQRKFSSREATQACLNRIAALQPKLNAFVAIEPDEALAAADAADA 63 Query: 63 ALAKGNSRGALHGVPLAHKDMYYDAGKVVTCGSLIRRDFVPKTTATALQRLKDAGQVRLG 122 ALA+G S+GALHGVPLAHKDMYYD G VVTCGS IRRDFV TT+TALQRLKDAG VRLG Sbjct: 64 ALARGESKGALHGVPLAHKDMYYDQGYVVTCGSKIRRDFVATTTSTALQRLKDAGTVRLG 123 Query: 123 SLQMVEFAYGPTGHNVHYGAVRNPWNTEHITGGSSSGSGSAVAARLTFAALGSDTGGSVR 182 SLQM EFAYGPTGHN H+GAV NPW E ITGGSSSGSGSAVAARLT+AALGSDTGGS+R Sbjct: 124 SLQMAEFAYGPTGHNAHFGAVHNPWAIERITGGSSSGSGSAVAARLTYAALGSDTGGSIR 183 Query: 183 MPAHFCGVTGLKTTVGRVSRAGAMPLSQSLDTVGPLAQTAEDCALLLGLMAGADPEDLTA 242 MPAHFCGVTGLKTTVG +SRAGAMPLSQSLDTVGPLA+TAEDCALLLGLMAGADP D T Sbjct: 184 MPAHFCGVTGLKTTVGLISRAGAMPLSQSLDTVGPLARTAEDCALLLGLMAGADPADPTC 243 Query: 243 STQPVPDYLAATKQSLKGLKIGVPTAFYVDDLDPEVARILDETVATLKKEGAEIVKVELP 302 S++ VPDY AATK L G++IG+P+AFYVDDLDPEVAR+LD+TVATL++EGA+IVKVELP Sbjct: 244 SSRDVPDYSAATKGKLSGVRIGLPSAFYVDDLDPEVARVLDDTVATLQREGADIVKVELP 303 Query: 303 DQRQLSSASQLVLAVEAAAFHKRWMIERPQDYGAQVLMRLQNGLTIPAVTYLEAMRWRGP 362 DQRQLS+A QLVLAVEAA FH WMIERPQDYG QVLMRLQN L IPAVTYLEAMRWRG Sbjct: 304 DQRQLSAACQLVLAVEAAGFHTSWMIERPQDYGPQVLMRLQNALAIPAVTYLEAMRWRGV 363 Query: 363 ALAAHNAAVNGVDAVIAPSSPVPAPTIAESDVGNGPGADAVLQRLTRFTRPVNYLGLPSL 422 ALAAH AA GVDAV+AP +PV APTI ESDVGN A+AV+QRLTRFTRP+NYLGLP+L Sbjct: 364 ALAAHLAATAGVDAVLAPVAPVAAPTIVESDVGNSLDAEAVIQRLTRFTRPINYLGLPAL 423 Query: 423 SIPSGFTKTGLPVGMQLIGRSFEEAVLLRIGAAFQRATDFHARVPKLA 470 ++P GFTK LPVG+QLIG+ F+EA+LLRIGAA+QR TDFH++ P+LA Sbjct: 424 ALPCGFTKALLPVGLQLIGKPFDEAMLLRIGAAWQRVTDFHSKTPELA 471