BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0043.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004069038.1| DNA-binding transcriptional activator GcvA [... 173 3e-41 ref|ZP_01614587.1| DNA-binding transcriptional dual regulator [A... 173 4e-41 ref|ZP_08408362.1| glycine cleavage system transcriptional activ... 172 6e-41 ref|YP_001177969.1| DNA-binding transcriptional activator GcvA [... 172 8e-41 ref|ZP_05970088.1| glycine cleavage system transcriptional activ... 172 8e-41 >ref|YP_004069038.1| DNA-binding transcriptional activator GcvA [Pseudoalteromonas sp. SM9913] gb|ADT68887.1| DNA-binding transcriptional activator GcvA [Pseudoalteromonas sp. SM9913] Length = 298 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 108/296 (36%), Positives = 156/296 (52%), Gaps = 6/296 (2%) Query: 7 RVIPPLPALLAFERAATQLSFRRAARDLSLSPSAISHQIRGLEEQFGTKLFVRGARQVRL 66 R +PPL AL AFE AA LSF +AA +L ++ +A+SHQI+ LEE G KLF+R R + L Sbjct: 3 RRVPPLNALKAFEAAARHLSFTKAAEELYVTQAAVSHQIKTLEEHLGLKLFLRKNRSLLL 62 Query: 67 TADGERYLAKVSAALATLQEASRDMLRQRGEASGELWISSLPFFTSAVLLPALPEFKRRH 126 T +G+ Y + L +A+ +L RG A G L +S P F L+P L F H Sbjct: 63 TEEGQGYFLDIKEIFTQLIDATEKLL-ARG-AKGSLTVSLTPSFAIQWLIPRLSLFNELH 120 Query: 127 PQLTLRIEATHQYADFNGSRVDVAIRYGREHAAGLKVEPLVQVKGMPVCTPALVKA--GL 184 P++ +RI+A Q + VD++I YGR H +G++ L +P+C+P L+ L Sbjct: 121 PEIDVRIKAQDQDENSLTDDVDISIYYGRGHWSGVQAYKLHTEYLVPLCSPLLLNGPRAL 180 Query: 185 RTPADLSREVLIHVTTQPRAWPAWLKEAGLPNLAPRGHLWLDSVPAMLEAAEHGLGVAIA 244 P+DL+ L+H TT+ + W W+K AG+ N+ +L+AA HG GVAI Sbjct: 181 NQPSDLANHTLLHDTTR-KNWKTWMKTAGVRNVQVNQGPIFSHSSMVLQAAVHGQGVAIG 239 Query: 245 IAPLIKVRPGFGKRLVAPFAFEAAYSETIYLVSRTEQARDRRIAAVRRWITDAVAR 300 + L K G RLV PF YLV R Q +I + + W+ V + Sbjct: 240 NSVLAKPDIDAG-RLVIPFNHSLESKNAYYLVIRESQNELGKIVSFKDWMLSLVEQ 294 >ref|ZP_01614587.1| DNA-binding transcriptional dual regulator [Alteromonadales bacterium TW-7] gb|EAW26163.1| DNA-binding transcriptional dual regulator [Alteromonadales bacterium TW-7] Length = 298 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 109/296 (36%), Positives = 157/296 (53%), Gaps = 6/296 (2%) Query: 7 RVIPPLPALLAFERAATQLSFRRAARDLSLSPSAISHQIRGLEEQFGTKLFVRGARQVRL 66 R +PPL AL AFE AA LSF +AA +L ++ +A+SHQI+ LEE G KLF+R R + L Sbjct: 3 RRVPPLNALKAFEAAARHLSFTKAAEELYVTQAAVSHQIKTLEEHLGLKLFLRKNRSLLL 62 Query: 67 TADGERYLAKVSAALATLQEASRDMLRQRGEASGELWISSLPFFTSAVLLPALPEFKRRH 126 T +G+ Y + L +A+ +L RG A G L +S P F L+P L F H Sbjct: 63 TEEGQGYFLDIKEIFTQLIDATEKLL-ARG-AKGSLTVSLTPSFAIQWLVPRLSLFNELH 120 Query: 127 PQLTLRIEATHQYADFNGSRVDVAIRYGREHAAGLKVEPLVQVKGMPVCTPALVKA--GL 184 P++ +RI+A Q + VD+AI YGR H G++ L +P+C+P L+ L Sbjct: 121 PEIDVRIKAQDQDENSLSDDVDIAIYYGRGHWNGVQAYKLHTEYLVPLCSPMLLSGPKPL 180 Query: 185 RTPADLSREVLIHVTTQPRAWPAWLKEAGLPNLAPRGHLWLDSVPAMLEAAEHGLGVAIA 244 P+DL++ L+H TT+ + W W+K AG+ N+ +L+AA HG GVAI Sbjct: 181 DQPSDLAQHTLLHDTTR-KNWKTWMKTAGVRNVQVNQGPIFSHSSMVLQAAVHGQGVAIG 239 Query: 245 IAPLIKVRPGFGKRLVAPFAFEAAYSETIYLVSRTEQARDRRIAAVRRWITDAVAR 300 + L K G RLV PF+ YLV R Q +I + + W+ V + Sbjct: 240 NSVLAKPDIDAG-RLVIPFSHSLESKNAYYLVLRESQTELGKIVSFKEWMLSLVEQ 294 >ref|ZP_08408362.1| glycine cleavage system transcriptional activator GcvA [Pseudoalteromonas haloplanktis ANT/505] gb|EGI74574.1| glycine cleavage system transcriptional activator GcvA [Pseudoalteromonas haloplanktis ANT/505] Length = 300 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 110/295 (37%), Positives = 157/295 (53%), Gaps = 8/295 (2%) Query: 7 RVIPPLPALLAFERAATQLSFRRAARDLSLSPSAISHQIRGLEEQFGTKLFVRGARQVRL 66 R +PPL AL AFE AA LSF +AA +L ++ +A+SHQI+ LEE G KLF+R R + L Sbjct: 3 RRVPPLNALKAFEAAARHLSFTKAAEELYVTQAAVSHQIKTLEEHLGLKLFLRKNRSLLL 62 Query: 67 TADGERYLAKVSAALATLQEASRDMLRQRGEASGELWISSLPFFTSAVLLPALPEFKRRH 126 T +G+ Y + L +A+ +L RG A G L +S P F L+P L F H Sbjct: 63 TEEGQGYFLDIKEIFTQLIDATEKLL-ARG-AKGSLTVSLTPSFAIQWLVPRLSLFNELH 120 Query: 127 PQLTLRIEATHQYADFNGSRVDVAIRYGREHAAGLKVEPLVQVKGMPVCTPALVKAGLR- 185 P++ +RI+A Q + VD+AI YGR H G++ L +P+C+P L+ +GL+ Sbjct: 121 PEIDVRIKAQDQDENSLTDDVDIAIYYGRGHWNGVQAYKLHTEYLVPLCSPMLL-SGLKP 179 Query: 186 --TPADLSREVLIHVTTQPRAWPAWLKEAGLPNLAPRGHLWLDSVPAMLEAAEHGLGVAI 243 P+DL+ L+H TT+ + W W+K AG+ N+ +L+AA HG GVAI Sbjct: 180 LDQPSDLAHHTLLHDTTR-KNWKTWMKTAGVRNIQVNQGPIFSHSSMVLQAAVHGQGVAI 238 Query: 244 AIAPLIKVRPGFGKRLVAPFAFEAAYSETIYLVSRTEQARDRRIAAVRRWITDAV 298 + L K G RLV PF YLV R Q +I + + W+ V Sbjct: 239 GNSVLAKPDIDAG-RLVIPFNHSLESKNAYYLVLRESQTELGKIVSFKEWMLSLV 292 >ref|YP_001177969.1| DNA-binding transcriptional activator GcvA [Enterobacter sp. 638] gb|ABP61918.1| transcriptional regulator, LysR family [Enterobacter sp. 638] Length = 304 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 109/288 (37%), Positives = 157/288 (54%), Gaps = 6/288 (2%) Query: 9 IPPLPALLAFERAATQLSFRRAARDLSLSPSAISHQIRGLEEQFGTKLFVRGARQVRLTA 68 +PPL AL F+ AA LSF RAA +L ++ +A+SHQI+ LE+ G KLF R R + LT Sbjct: 5 LPPLNALRVFDAAARHLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTE 64 Query: 69 DGERYLAKVSAALATLQEASRDMLRQRGEASGELWISSLPFFTSAVLLPALPEFKRRHPQ 128 +G+ Y + + L EA+R + Q A G L +S LP F L+P L F +P+ Sbjct: 65 EGQSYFQDIKDIFSQLTEATRKL--QARSAKGALTVSLLPSFAIHWLVPRLSSFNSAYPE 122 Query: 129 LTLRIEATHQYADFNGSRVDVAIRYGREHAAGLKVEPLVQVKGMPVCTPALVKA--GLRT 186 + +RI+A + D VDVAI YGR + GL+VE L +PVC+P L+ L+T Sbjct: 123 IDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLLLTGDKALKT 182 Query: 187 PADLSREVLIHVTTQPRAWPAWLKEAGLPNLAPRGHLWLDSVPAMLEAAEHGLGVAIAIA 246 PADL++ L+H ++ R W + ++ GL ++ + +L+AA HG GVA+A Sbjct: 183 PADLAQHTLLHDASR-RDWQTYTRQLGLNHINVQHGPIFSHSAMVLQAAIHGQGVALANN 241 Query: 247 PLIKVRPGFGKRLVAPFAFEAAYSETIYLVSRTEQARDRRIAAVRRWI 294 + + G RLV PF YLV QA +IAA R+WI Sbjct: 242 VMAQSEIEAG-RLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWI 288 >ref|ZP_05970088.1| glycine cleavage system transcriptional activator [Enterobacter cancerogenus ATCC 35316] gb|EFC54503.1| glycine cleavage system transcriptional activator [Enterobacter cancerogenus ATCC 35316] Length = 305 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 110/294 (37%), Positives = 158/294 (53%), Gaps = 6/294 (2%) Query: 9 IPPLPALLAFERAATQLSFRRAARDLSLSPSAISHQIRGLEEQFGTKLFVRGARQVRLTA 68 +PPL AL F+ AA LSF RAA +L ++ +A+SHQI+ LE+ G KLF R R + LT Sbjct: 5 LPPLNALRVFDAAARHLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTE 64 Query: 69 DGERYLAKVSAALATLQEASRDMLRQRGEASGELWISSLPFFTSAVLLPALPEFKRRHPQ 128 +G+ Y + + L EA+R + Q A G L +S LP F L+P L F +P Sbjct: 65 EGQSYFQDIKEIFSQLTEATRKL--QARSAKGALTVSLLPSFAIQWLVPRLSSFNSAYPG 122 Query: 129 LTLRIEATHQYADFNGSRVDVAIRYGREHAAGLKVEPLVQVKGMPVCTPALV--KAGLRT 186 + +RI+A + D VDVAI YGR + GL+VE L +PVC+P L+ + L+T Sbjct: 123 IDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPMLLTGEKALKT 182 Query: 187 PADLSREVLIHVTTQPRAWPAWLKEAGLPNLAPRGHLWLDSVPAMLEAAEHGLGVAIAIA 246 PADL++ L+H ++ R W + ++ GL ++ + +L+AA HG GVA+A Sbjct: 183 PADLAKHTLLHDASR-RDWQTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALANN 241 Query: 247 PLIKVRPGFGKRLVAPFAFEAAYSETIYLVSRTEQARDRRIAAVRRWITDAVAR 300 + + G RLV PF YLV QA +IAA R+WI A Sbjct: 242 VMAQSEIEAG-RLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILSKAAN 294