BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0040.p (399 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001203067.1| HlyD family secretion protein [Bradyrhizobiu... 676 0.0 ref|YP_001242928.1| HlyD family secretion protein [Bradyrhizobiu... 671 0.0 ref|NP_774553.1| HlyD family secretion protein [Bradyrhizobium j... 641 0.0 ref|ZP_08629838.1| HlyD family secretion protein [Bradyrhizobiac... 617 e-174 ref|YP_002497811.1| type I secretion membrane fusion protein, Hl... 483 e-134 >ref|YP_001203067.1| HlyD family secretion protein [Bradyrhizobium sp. ORS 278] emb|CAL74830.1| putative secretion protein (HlyD family); putative Proteases secretion protein [Bradyrhizobium sp. ORS 278] Length = 445 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/396 (84%), Positives = 368/396 (92%), Gaps = 1/396 (0%) Query: 4 GALIAPGSVVVESNVKKVQHPTGGVVGEVRVRDGDVVKAGDIVVRLDETVVKASLAIVVK 63 GALIAPG +VVESNVKKVQHPTGGVVGE+R RDGDVVK+GDIVVRLD+TV KASLAIV K Sbjct: 51 GALIAPGQIVVESNVKKVQHPTGGVVGELRARDGDVVKSGDIVVRLDDTVTKASLAIVTK 110 Query: 64 TLNGLYARAARLEAEQQGRDKIAFPPQLLEQAKEPDVRDIMASETKLFEVRVNGRTGQKA 123 L+ L ARAARLEAEQ+G KI FP QLLE+ +PDV+ + ASETKLFEVRVNGR GQKA Sbjct: 111 NLDALQARAARLEAEQRGWAKILFPQQLLERMSDPDVKSLTASETKLFEVRVNGRIGQKA 170 Query: 124 QLRERVTQLNEEISGLQAQESAKDKEIALVQQELVGVRQLYEQHLVQLTRLTTLERDAAR 183 QLRERV QL+EEI GL AQ +AKD+EIALVQ+EL GVRQLYEQHLVQL+RLTTLERDAAR Sbjct: 171 QLRERVAQLSEEIEGLSAQVAAKDQEIALVQKELDGVRQLYEQHLVQLSRLTTLERDAAR 230 Query: 184 LSGERAQYIASRAQAKGKITETELQIIQVDKDMLSEVSKDLRETNDKIGEFVERKVTAED 243 L+GERAQYIA+RAQAKGKI+ETELQIIQVDKDM+SEVSKDLRET DKIGEFVERKVTAED Sbjct: 231 LNGERAQYIAARAQAKGKISETELQIIQVDKDMVSEVSKDLRETTDKIGEFVERKVTAED 290 Query: 244 QLRRIDIRAPQDGVVLQSTVHTVGGVITAGDAIMMIVPKADDLSVEAKVNPQDIDKLQVG 303 QLRR+DIRAPQDG+VLQS+VHTVGGVITAGD IM+IVP++DDL VEAKVNPQDIDKLQVG Sbjct: 291 QLRRVDIRAPQDGMVLQSSVHTVGGVITAGDTIMLIVPQSDDLQVEAKVNPQDIDKLQVG 350 Query: 304 QKTVLRLSAFNQRTTPELNGVVTRVSADVTTDQRTGQSYYTIRVSMPPEEVARLGSEVKI 363 QKT+LRLSAFNQRTTPELNGVV+RVS DVTTDQRTGQSYYTIRVSMPPEE+ARLG +VK+ Sbjct: 351 QKTLLRLSAFNQRTTPELNGVVSRVSPDVTTDQRTGQSYYTIRVSMPPEEIARLG-DVKL 409 Query: 364 IPGMPVEAFVQTGDRTMLSYLMKPMSDQFMRSFREK 399 IPGMPVEAFVQTGDRT++SYLMKP+ DQ MR+FREK Sbjct: 410 IPGMPVEAFVQTGDRTVISYLMKPLHDQLMRAFREK 445 >ref|YP_001242928.1| HlyD family secretion protein [Bradyrhizobium sp. BTAi1] gb|ABQ39022.1| putative secretion protein (HlyD family) [Bradyrhizobium sp. BTAi1] Length = 446 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/396 (83%), Positives = 366/396 (92%), Gaps = 1/396 (0%) Query: 4 GALIAPGSVVVESNVKKVQHPTGGVVGEVRVRDGDVVKAGDIVVRLDETVVKASLAIVVK 63 GALIAPG +VVESNVKKVQHPTGGVVGE+R RDGDVVK+GDIVVRLD+TV KASLAIV K Sbjct: 52 GALIAPGQIVVESNVKKVQHPTGGVVGELRARDGDVVKSGDIVVRLDDTVTKASLAIVTK 111 Query: 64 TLNGLYARAARLEAEQQGRDKIAFPPQLLEQAKEPDVRDIMASETKLFEVRVNGRTGQKA 123 L+ L ARAARLEAEQ+G KI FP QLL++ +PDV ++ASETKLFEVRVNGR GQKA Sbjct: 112 NLDALLARAARLEAEQRGWAKILFPQQLLQRLSDPDVSGLLASETKLFEVRVNGRIGQKA 171 Query: 124 QLRERVTQLNEEISGLQAQESAKDKEIALVQQELVGVRQLYEQHLVQLTRLTTLERDAAR 183 QLRERV QL EEI GL AQ SAK++EIALVQ+EL GVRQLYEQHLVQL+RLTTLERD AR Sbjct: 172 QLRERVAQLTEEIEGLSAQVSAKEQEIALVQKELEGVRQLYEQHLVQLSRLTTLERDTAR 231 Query: 184 LSGERAQYIASRAQAKGKITETELQIIQVDKDMLSEVSKDLRETNDKIGEFVERKVTAED 243 L+GERAQ+IA+RAQAKGKI+ETELQIIQVDKDM+SEVSKDLRET DKIGEFVERKVTAED Sbjct: 232 LNGERAQFIAARAQAKGKISETELQIIQVDKDMVSEVSKDLRETTDKIGEFVERKVTAED 291 Query: 244 QLRRIDIRAPQDGVVLQSTVHTVGGVITAGDAIMMIVPKADDLSVEAKVNPQDIDKLQVG 303 QLRR+DIRAPQDG+VLQS+VHTVGGVITAGD IM+IVP+ADDL VEAKVNPQDIDKLQVG Sbjct: 292 QLRRVDIRAPQDGMVLQSSVHTVGGVITAGDTIMLIVPQADDLQVEAKVNPQDIDKLQVG 351 Query: 304 QKTVLRLSAFNQRTTPELNGVVTRVSADVTTDQRTGQSYYTIRVSMPPEEVARLGSEVKI 363 QKT+LRLSAFNQRTTPELNGVV+RVS DVTTDQRTGQSYYTIRVSMPP+E+ARLG +VK+ Sbjct: 352 QKTLLRLSAFNQRTTPELNGVVSRVSPDVTTDQRTGQSYYTIRVSMPPQEIARLG-DVKL 410 Query: 364 IPGMPVEAFVQTGDRTMLSYLMKPMSDQFMRSFREK 399 IPGMPVEAFVQTGDRT+LSYLMKP+ DQ MR+FREK Sbjct: 411 IPGMPVEAFVQTGDRTVLSYLMKPLHDQLMRAFREK 446 >ref|NP_774553.1| HlyD family secretion protein [Bradyrhizobium japonicum USDA 110] dbj|BAC53178.1| HlyD family secretion protein [Bradyrhizobium japonicum USDA 110] Length = 456 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/396 (81%), Positives = 362/396 (91%), Gaps = 1/396 (0%) Query: 4 GALIAPGSVVVESNVKKVQHPTGGVVGEVRVRDGDVVKAGDIVVRLDETVVKASLAIVVK 63 GALIAPG VVVESNVKKVQHPTGGVVGE+R RDGDVVKAGD+VVRLD+TV KA+LAIV K Sbjct: 62 GALIAPGQVVVESNVKKVQHPTGGVVGELRARDGDVVKAGDVVVRLDDTVTKANLAIVTK 121 Query: 64 TLNGLYARAARLEAEQQGRDKIAFPPQLLEQAKEPDVRDIMASETKLFEVRVNGRTGQKA 123 L+ ARAARL+AEQ+G D+I FP LL++ + DV+ ++++ETKLF+VRVNGR GQKA Sbjct: 122 NLDAALARAARLQAEQRGIDRIDFPQSLLDRGNDYDVKTLLSAETKLFDVRVNGRAGQKA 181 Query: 124 QLRERVTQLNEEISGLQAQESAKDKEIALVQQELVGVRQLYEQHLVQLTRLTTLERDAAR 183 QLRER+ QLNEEI GL AQE AKDKEI+LVQQEL GVR LYE+HLVQ++RLTTLERD+AR Sbjct: 182 QLRERIQQLNEEIEGLSAQERAKDKEISLVQQELTGVRDLYEKHLVQISRLTTLERDSAR 241 Query: 184 LSGERAQYIASRAQAKGKITETELQIIQVDKDMLSEVSKDLRETNDKIGEFVERKVTAED 243 L+GERAQYIASRAQAKGKITETELQIIQVDKDM+SEVSKDLRETNDKIGE +ERKV AED Sbjct: 242 LNGERAQYIASRAQAKGKITETELQIIQVDKDMVSEVSKDLRETNDKIGELIERKVAAED 301 Query: 244 QLRRIDIRAPQDGVVLQSTVHTVGGVITAGDAIMMIVPKADDLSVEAKVNPQDIDKLQVG 303 QLRR+DIRAPQDG+VLQSTVHTVGGV+TAGDA+M+IVP+ADDL VEAKVNP DIDKLQ+G Sbjct: 302 QLRRVDIRAPQDGMVLQSTVHTVGGVVTAGDALMLIVPQADDLQVEAKVNPVDIDKLQIG 361 Query: 304 QKTVLRLSAFNQRTTPELNGVVTRVSADVTTDQRTGQSYYTIRVSMPPEEVARLGSEVKI 363 QKT+LRLSAFNQRTTPELNGVV+RVS DVTTDQRTGQSYYTIRVS+P EEV RLG + K+ Sbjct: 362 QKTLLRLSAFNQRTTPELNGVVSRVSPDVTTDQRTGQSYYTIRVSLPAEEVVRLG-DSKL 420 Query: 364 IPGMPVEAFVQTGDRTMLSYLMKPMSDQFMRSFREK 399 IPGMPVEAFVQTGDRTMLSYLMKP+ DQ MR+FREK Sbjct: 421 IPGMPVEAFVQTGDRTMLSYLMKPLHDQLMRAFREK 456 >ref|ZP_08629838.1| HlyD family secretion protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07481.1| HlyD family secretion protein [Bradyrhizobiaceae bacterium SG-6C] Length = 465 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 306/396 (77%), Positives = 357/396 (90%), Gaps = 1/396 (0%) Query: 4 GALIAPGSVVVESNVKKVQHPTGGVVGEVRVRDGDVVKAGDIVVRLDETVVKASLAIVVK 63 GALIAPGS+VV+SNVKKVQHPTGGVVGEVR RDGD VKAGDIVVRLD+TV KASLAIV K Sbjct: 71 GALIAPGSIVVDSNVKKVQHPTGGVVGEVRARDGDRVKAGDIVVRLDDTVTKASLAIVTK 130 Query: 64 TLNGLYARAARLEAEQQGRDKIAFPPQLLEQAKEPDVRDIMASETKLFEVRVNGRTGQKA 123 LNGL AR ARL AEQ+G D+I FPP+L++ +P+VR ++ +E KLF+VR +GR QKA Sbjct: 131 GLNGLLARRARLLAEQEGLDRITFPPELMDYFSDPEVRSLIGNEIKLFQVRSSGRVNQKA 190 Query: 124 QLRERVTQLNEEISGLQAQESAKDKEIALVQQELVGVRQLYEQHLVQLTRLTTLERDAAR 183 QL+ER+ QL EEI GL+AQE+AK +EI L+Q+ELVGVR LY ++LVQ++RLT LERDAAR Sbjct: 191 QLKERIAQLREEIGGLEAQENAKSREIELIQKELVGVRDLYAKNLVQISRLTVLERDAAR 250 Query: 184 LSGERAQYIASRAQAKGKITETELQIIQVDKDMLSEVSKDLRETNDKIGEFVERKVTAED 243 L G+RAQ+IA +AQAKGKITE ELQIIQ+DKD+ SEVSK++RE NDKIGEFVERKVTAED Sbjct: 251 LDGDRAQFIAQKAQAKGKITEIELQIIQIDKDLSSEVSKEMREINDKIGEFVERKVTAED 310 Query: 244 QLRRIDIRAPQDGVVLQSTVHTVGGVITAGDAIMMIVPKADDLSVEAKVNPQDIDKLQVG 303 QLRRIDIRAPQDG+VLQSTVHTVGGVITAGD IM+IVP++D+LSVEAKVNPQDID+L++G Sbjct: 311 QLRRIDIRAPQDGMVLQSTVHTVGGVITAGDTIMLIVPESDNLSVEAKVNPQDIDQLRIG 370 Query: 304 QKTVLRLSAFNQRTTPELNGVVTRVSADVTTDQRTGQSYYTIRVSMPPEEVARLGSEVKI 363 QKT+LRLSAFNQRTTPELNG++TR+S D T DQRTGQSYYTIRVS+PPEEVARLG EVK+ Sbjct: 371 QKTLLRLSAFNQRTTPELNGIITRISPDTTVDQRTGQSYYTIRVSLPPEEVARLG-EVKL 429 Query: 364 IPGMPVEAFVQTGDRTMLSYLMKPMSDQFMRSFREK 399 IPGMPVEAFVQTG+RTM+SYL KP+SDQ MR+FREK Sbjct: 430 IPGMPVEAFVQTGERTMISYLAKPLSDQLMRAFREK 465 >ref|YP_002497811.1| type I secretion membrane fusion protein, HlyD family [Methylobacterium nodulans ORS 2060] gb|ACL57508.1| type I secretion membrane fusion protein, HlyD family [Methylobacterium nodulans ORS 2060] Length = 446 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 238/396 (60%), Positives = 311/396 (78%), Gaps = 2/396 (0%) Query: 4 GALIAPGSVVVESNVKKVQHPTGGVVGEVRVRDGDVVKAGDIVVRLDETVVKASLAIVVK 63 GA+IAPG +VVES+VKKVQHPTGGVVGE+RVRDGD VKAGD+++RLDET +A+L IV+K Sbjct: 51 GAVIAPGQMVVESDVKKVQHPTGGVVGELRVRDGDRVKAGDVLIRLDETQTRANLDIVLK 110 Query: 64 TLNGLYARAARLEAEQQGRDKIAFPPQLLEQAK-EPDVRDIMASETKLFEVRVNGRTGQK 122 L+ L AR AR EAE+ G I FP LL++A+ + V ++ ET+LF RVN R GQK Sbjct: 111 ALDELAARRARDEAERDGASAITFPADLLQRARTDATVAHLIEGETRLFTSRVNAREGQK 170 Query: 123 AQLRERVTQLNEEISGLQAQESAKDKEIALVQQELVGVRQLYEQHLVQLTRLTTLERDAA 182 AQLRER+ QL +EI+GL Q AK++EIA + EL GVR+LY ++LVQL RLT LERDA Sbjct: 171 AQLRERLAQLKQEITGLTQQAGAKEREIAFIASELKGVRELYAKNLVQLPRLTALERDAV 230 Query: 183 RLSGERAQYIASRAQAKGKITETELQIIQVDKDMLSEVSKDLRETNDKIGEFVERKVTAE 242 RL GER Q IAS A A+GK++E ELQI+Q+D+DM +EV KDL E K E VE++V AE Sbjct: 231 RLEGERGQLIASTASARGKLSEIELQILQIDQDMRTEVGKDLAEIRGKWSELVEKRVAAE 290 Query: 243 DQLRRIDIRAPQDGVVLQSTVHTVGGVITAGDAIMMIVPKADDLSVEAKVNPQDIDKLQV 302 D L+R+++RAPQDG+V Q TVHT+GG++T + M+IVP AD L+VE K+ PQDID +++ Sbjct: 291 DLLKRVELRAPQDGIVHQMTVHTIGGLVTPNEPAMLIVPSADQLAVEVKIQPQDIDNVRL 350 Query: 303 GQKTVLRLSAFNQRTTPELNGVVTRVSADVTTDQRTGQSYYTIRVSMPPEEVARLGSEVK 362 Q VLR +AFNQRTTPE++GVVTRVSADV+TD +TG SYYT R+S+P E+ ARLG+ V+ Sbjct: 351 DQPVVLRFAAFNQRTTPEIDGVVTRVSADVSTDPKTGASYYTARISVPEEQKARLGN-VR 409 Query: 363 IIPGMPVEAFVQTGDRTMLSYLMKPMSDQFMRSFRE 398 ++PGMPVE+F+Q G R++LSYL KP++DQ +++RE Sbjct: 410 LVPGMPVESFMQLGQRSVLSYLTKPLADQVAKAWRE 445