BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0038.p (332 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774548.1| hypothetical protein bll7908 [Bradyrhizobium ja... 572 e-161 ref|NP_085764.1| hypothetical protein mlr9221 [Mesorhizobium lot... 395 e-108 ref|NP_774251.1| hypothetical protein bll7611 [Bradyrhizobium ja... 370 e-100 ref|ZP_08628889.1| hypothetical protein CSIRO_1974 [Bradyrhizobi... 370 e-100 ref|YP_001240219.1| hypothetical protein BBta_4261 [Bradyrhizobi... 355 7e-96 >ref|NP_774548.1| hypothetical protein bll7908 [Bradyrhizobium japonicum USDA 110] dbj|BAC53173.1| bll7908 [Bradyrhizobium japonicum USDA 110] Length = 361 Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust. Identities = 268/325 (82%), Positives = 291/325 (89%) Query: 1 MNDYWRDQVTTRGMTDLISQSYPTNSPISSRPDWRPAQGKPGSSLADMQRQALDRFGTAY 60 +NDYWRDQVTTRGM DL+SQSYP NSPI +RPDWRP GKPG+SL DMQR LD F ++ Sbjct: 36 LNDYWRDQVTTRGMMDLVSQSYPQNSPIVARPDWRPESGKPGASLEDMQRHVLDPFQVSH 95 Query: 61 GICNPLYGVQMVFSEDMADAFCRALNDWLVKEWLDKDDRLRGSIVIPVQSIEKAVAEIER 120 ICNPLY VQMVFSEDM AFCRALNDWLVKEWLD+D RLRGSIVIP QS+EKAVAEIER Sbjct: 96 AICNPLYAVQMVFSEDMQAAFCRALNDWLVKEWLDRDKRLRGSIVIPTQSVEKAVAEIER 155 Query: 121 CAQDKRFVQVLMLVMGDMPLGKRHYWPIYAAAERLGLPVGIHAGSAYHNPPTSVGWGSYH 180 CA D+RFVQVLMLVMGD+PLGKR WPIY AAERL L VGIHAGSAYHNPPT+VGWGSYH Sbjct: 156 CAHDRRFVQVLMLVMGDVPLGKRALWPIYEAAERLDLAVGIHAGSAYHNPPTAVGWGSYH 215 Query: 181 IEDYVAQAQAFQTQLTSLIVEGVFARHPNLKMVMLESGFTWLPPFLWRLHKFWRGVRMET 240 IEDYV QAQAFQTQLTS+IVEGVFA++P LKMVMLESG +W+ PFLWRLHKFWRGVRMET Sbjct: 216 IEDYVGQAQAFQTQLTSVIVEGVFAKYPRLKMVMLESGVSWISPFLWRLHKFWRGVRMET 275 Query: 241 PWVDRAPLEIVRSNIRFSLQPVDAPPDGDTLNRLFDHMQSDELILFSSDYPHWQFDGDEV 300 PWVDRAPLE+VRSNIRFSLQP DAPP+ +TL RLFDHMQSDEL+LFS+DYPHWQFDG + Sbjct: 276 PWVDRAPLELVRSNIRFSLQPFDAPPEPETLIRLFDHMQSDELVLFSTDYPHWQFDGQDA 335 Query: 301 LPQGLSQDLVRKIMIDNPHATYGRL 325 LPQGL+ DLVRKIMIDNPHATY RL Sbjct: 336 LPQGLTPDLVRKIMIDNPHATYPRL 360 >ref|NP_085764.1| hypothetical protein mlr9221 [Mesorhizobium loti MAFF303099] dbj|BAB54605.1| mlr9221 [Mesorhizobium loti MAFF303099] Length = 357 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/328 (56%), Positives = 239/328 (72%), Gaps = 2/328 (0%) Query: 1 MNDYWRDQVTTRGM--TDLISQSYPTNSPISSRPDWRPAQGKPGSSLADMQRQALDRFGT 58 ++DYWR+ V RG+ DL SYP + P+S RPDWRP QG PGS ++ Q LD F + Sbjct: 30 LDDYWREHVIRRGLDREDLELSSYPPSLPLSCRPDWRPQQGLPGSQFEQLRDQVLDPFQS 89 Query: 59 AYGICNPLYGVQMVFSEDMADAFCRALNDWLVKEWLDKDDRLRGSIVIPVQSIEKAVAEI 118 + ICN L+G Q++FSED++ A CRA+N+W+ EWLD+D RLR SIV+PV S E AVAEI Sbjct: 90 RFAICNVLHGSQIMFSEDLSAALCRAINNWISAEWLDRDPRLRASIVVPVHSPELAVAEI 149 Query: 119 ERCAQDKRFVQVLMLVMGDMPLGKRHYWPIYAAAERLGLPVGIHAGSAYHNPPTSVGWGS 178 E A D RFVQVLML MG++PLG+R WPIYAAAER LP+GIHAGS+ NPP+ +GW S Sbjct: 150 EHRAADLRFVQVLMLAMGEVPLGRRQNWPIYAAAERHDLPIGIHAGSSLRNPPSPLGWSS 209 Query: 179 YHIEDYVAQAQAFQTQLTSLIVEGVFARHPNLKMVMLESGFTWLPPFLWRLHKFWRGVRM 238 ++I+DYV+QA F L SL+VEGVF + P LK+V+LESG TWLP LWR +K WRGVR Sbjct: 210 HYIDDYVSQAPGFSGALNSLVVEGVFNKFPRLKVVLLESGVTWLPAHLWRANKQWRGVRS 269 Query: 239 ETPWVDRAPLEIVRSNIRFSLQPVDAPPDGDTLNRLFDHMQSDELILFSSDYPHWQFDGD 298 ETPW+ R P EI+R ++R ++QP DAPP + + D + SDE++LFS+DYPHW FDG Sbjct: 270 ETPWLTRPPSEIIREHVRLTVQPFDAPPTDGQVQTIIDQIGSDEMLLFSTDYPHWHFDGT 329 Query: 299 EVLPQGLSQDLVRKIMIDNPHATYGRLK 326 + +PQGLS + + K++ DN ATY RL Sbjct: 330 DAVPQGLSHESLSKMLADNALATYPRLN 357 >ref|NP_774251.1| hypothetical protein bll7611 [Bradyrhizobium japonicum USDA 110] dbj|BAC52876.1| bll7611 [Bradyrhizobium japonicum USDA 110] Length = 354 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 165/328 (50%), Positives = 231/328 (70%), Gaps = 1/328 (0%) Query: 1 MNDYWRDQVTTRGMTDLISQSYPTNSPISSRPDWRPAQG-KPGSSLADMQRQALDRFGTA 59 ++D+W++QV +R + L SYP + P+S R DWRPA G KPGS LA +Q+ A D+ G + Sbjct: 25 LSDHWKEQVVSRAIDGLDLTSYPPSMPLSGRADWRPANGAKPGSDLAMVQKGAFDQLGAS 84 Query: 60 YGICNPLYGVQMVFSEDMADAFCRALNDWLVKEWLDKDDRLRGSIVIPVQSIEKAVAEIE 119 + I N LYG Q VF MA FC+A+NDW+ EWL +D RLR SIV+P+Q+ + A+ EIE Sbjct: 85 HAILNVLYGAQAVFDAYMAADFCKAINDWIAAEWLARDSRLRASIVVPMQAPDLAIEEIE 144 Query: 120 RCAQDKRFVQVLMLVMGDMPLGKRHYWPIYAAAERLGLPVGIHAGSAYHNPPTSVGWGSY 179 R A D RFV +L+L G+ LG+RH+WP+Y AE+ LP+ IHAG+ Y P+S GW S+ Sbjct: 145 RRAGDNRFVSILVLAQGETLLGRRHFWPVYQLAEKYKLPLAIHAGTQYRQAPSSAGWPSH 204 Query: 180 HIEDYVAQAQAFQTQLTSLIVEGVFARHPNLKMVMLESGFTWLPPFLWRLHKFWRGVRME 239 E Y +AQAFQ Q+ SLI EGVF ++PNLK+V++ESG +WLP F+WR +K WRGVR+E Sbjct: 205 RYEYYFVEAQAFQAQILSLIYEGVFGKYPNLKVVLMESGVSWLPAFMWRANKTWRGVRVE 264 Query: 240 TPWVDRAPLEIVRSNIRFSLQPVDAPPDGDTLNRLFDHMQSDELILFSSDYPHWQFDGDE 299 PWV+R P I+R N R ++QP DAP D ++ + D + S+++ LF+SDYPHWQFDGD+ Sbjct: 265 VPWVEREPASIIRDNFRVTMQPFDAPSDAKSVEEIIDQIGSEKMFLFASDYPHWQFDGDD 324 Query: 300 VLPQGLSQDLVRKIMIDNPHATYGRLKV 327 +P L + ++ K+ +DNP T+ RL + Sbjct: 325 PIPPNLPKSIIAKMCVDNPLETFPRLSL 352 >ref|ZP_08628889.1| hypothetical protein CSIRO_1974 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08248.1| hypothetical protein CSIRO_1974 [Bradyrhizobiaceae bacterium SG-6C] Length = 350 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/327 (54%), Positives = 229/327 (70%), Gaps = 8/327 (2%) Query: 1 MNDYWRDQVTTRGMTDLISQSYPTNSPISSRPDWRPAQGKPGSSLAD-MQRQALDRFGTA 59 ++DYWR+QVT+RG+ L S +N P + RPDWR G + D ++++ALD G+ Sbjct: 29 LDDYWREQVTSRGIDRLELTSDLSNMPPAVRPDWR------GETEVDQVRKRALDDMGSD 82 Query: 60 YGICNPLYGVQMVFSEDMADAFCRALNDWLVKEWLDKDDRLRGSIVIPVQSIEKAVAEIE 119 ICN LYG Q V+++D+A A CRA NDWL KEWLDKDDR R SIVIP QS E A EIE Sbjct: 83 IAICNCLYGSQAVYNQDLAAALCRATNDWLAKEWLDKDDRFRASIVIPWQSPELAAEEIE 142 Query: 120 RCAQDKRFVQVLMLVMGDMPLGKRHYWPIYAAAERLGLPVGIHAGSAYHNPPTSVGWGSY 179 R A D RFVQVLM+V+G++PLGKR WPIYAAAE+ GLP+GIH+G+ Y + P + GW SY Sbjct: 143 RRASDPRFVQVLMMVLGEVPLGKRQMWPIYAAAEKHGLPIGIHSGTIYRSAPWTNGWPSY 202 Query: 180 HIEDYVAQAQAFQTQLTSLIVEGVFARHPNLKMVMLESGFTWLPPFLWRLHKFWRGVRME 239 HIED VAQ+ FQTQL SL+ EGVF + P L +V+LESG TWLP FLWR+ K WRG+RME Sbjct: 203 HIEDQVAQSVGFQTQLLSLVAEGVFEQFPGLNVVLLESGVTWLPSFLWRIDKLWRGLRME 262 Query: 240 TPWVDRAPLEIVRSNIRFSLQPVDAPPDGDTLNRLFDHMQSDELILFSSDYPHWQFDGDE 299 PW+ RAP EIV+ +R ++QP D P D + + D + D ++LFS+DYPHW F+G + Sbjct: 263 VPWLKRAPSEIVKERVRLTMQPFDGPNDPQIVREMIDQIGPD-MMLFSTDYPHWNFEGAD 321 Query: 300 VLPQGLSQDLVRKIMIDNPHATYGRLK 326 P G DL+ K+ NP TY RL+ Sbjct: 322 FAPAGFDADLMAKLRTKNPMKTYARLQ 348 >ref|YP_001240219.1| hypothetical protein BBta_4261 [Bradyrhizobium sp. BTAi1] gb|ABQ36313.1| hypothetical protein BBta_4261 [Bradyrhizobium sp. BTAi1] Length = 366 Score = 355 bits (910), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 174/326 (53%), Positives = 222/326 (68%), Gaps = 5/326 (1%) Query: 1 MNDYWRDQVTTRGMTDL--ISQSYPTNSPISSRPDWRPAQGKPGSSLADMQRQALDRFGT 58 ++DYWRDQ+ R + + SYP N+PIS R DWR + L ++ QALD FG Sbjct: 27 LDDYWRDQLVNRAIDRMPFAMMSYPPNAPISMRADWRSTPA--ATPLDTLRAQALDPFGV 84 Query: 59 AYGICNPLYGVQMVFSEDMADAFCRALNDWLVKEWLDKDDRLRGSIVIPVQSIEKAVAEI 118 I N ++G + +DMA A CRA+NDWL +WLD++ RLRGSI+I Q I +AVAE+ Sbjct: 85 QCAIVNVIHGCVALHHDDMAAALCRAVNDWLRVQWLDREPRLRGSILIHPQDIAQAVAEV 144 Query: 119 ERCAQDKRFVQVLMLVMGDMPLGKRHYWPIYAAAERLGLPVGIHAGSAYHNPPTSVGWGS 178 ER A D RFVQ+LML MG+ PLG+R ++P+YAAAER GL V +HAGS Y PT VGW Sbjct: 145 ERLASDSRFVQILMLAMGERPLGRREFFPLYAAAERHGLVVAVHAGSTYRYAPTIVGWPC 204 Query: 179 YHIEDYVAQAQAFQTQLTSLIVEGVFARHPNLKMVMLESGFTWLPPFLWRLHKFWRGVRM 238 Y EDYVAQAQAF+ Q SLI EGVF + P LK V LESG +WLP +WR K WRG R Sbjct: 205 YQFEDYVAQAQAFENQTVSLIAEGVFQQFPKLKFVFLESGVSWLPVTMWRTDKTWRGARP 264 Query: 239 ETPWVDRAPLEIVRSNIRFSLQPVDAPPDGDTLNRLFDHMQSDELILFSSDYPHWQFDGD 298 ETPWVDR P EI+R +IR + QP DA PD + + + SD+++LF++DYPHWQF+GD Sbjct: 265 ETPWVDRWPSEIIREHIRLTTQPFDA-PDATAVAQTIARIGSDDMLLFATDYPHWQFEGD 323 Query: 299 EVLPQGLSQDLVRKIMIDNPHATYGR 324 +VLP G+ +RK++IDN ATY R Sbjct: 324 DVLPDGVPSATLRKLLIDNAQATYPR 349