BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0036.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774546.1| ferredoxin [Bradyrhizobium japonicum USDA 110] ...   257   4e-67
ref|YP_001240221.1| hypothetical protein BBta_4263 [Bradyrhizobi...   176   1e-42
ref|YP_004336270.1| Rieske (2Fe-2S) iron-sulfur domain-containin...   170   6e-41
ref|NP_774249.1| Rieske (2Fe-2S) domain-containing protein [Brad...   170   6e-41
ref|ZP_08628891.1| hypothetical protein CSIRO_1976 [Bradyrhizobi...   153   7e-36

>ref|NP_774546.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53171.1| bll7906 [Bradyrhizobium japonicum USDA 110]
          Length = 137

 Score =  257 bits (657), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 120/137 (87%), Positives = 130/137 (94%)

Query: 1   MARHVIAPVDELPPGSRKFLEIDGRPIAVFNVKGEFFGLLNRCPHQGAALCEGPLIGLAS 60
           MARHVIAPVDELPPG+RKFLEI+GRPIAVFN+KGE+FGL+NRCPHQGAALCEGPLIGLA 
Sbjct: 1   MARHVIAPVDELPPGTRKFLEIEGRPIAVFNIKGEYFGLMNRCPHQGAALCEGPLIGLAQ 60

Query: 61  SSDPGEIEYTKLGEILRCPWHGWEFDIRTGQSYCDPRRFRVRAYPVSVEPGTNVVKGPYV 120
           SSDPGEIEYT+LGEI+RCPWHGWEFDIRTGQSYCDPRRFRV+AYP  V PG +VVKGPYV
Sbjct: 61  SSDPGEIEYTRLGEIIRCPWHGWEFDIRTGQSYCDPRRFRVKAYPAHVAPGASVVKGPYV 120

Query: 121 AETIKVAVESDYVVVDL 137
           AETI V VESDYVVV+L
Sbjct: 121 AETIPVKVESDYVVVEL 137


>ref|YP_001240221.1| hypothetical protein BBta_4263 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36315.1| hypothetical protein BBta_4263 [Bradyrhizobium sp. BTAi1]
          Length = 137

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 100/137 (72%)

Query: 1   MARHVIAPVDELPPGSRKFLEIDGRPIAVFNVKGEFFGLLNRCPHQGAALCEGPLIGLAS 60
           M+RHV+   DELPPG+R+   IDGR IA+FNV G    LLNRCPH GA +C G + G+A 
Sbjct: 1   MSRHVVCSADELPPGARRTAFIDGREIALFNVDGRLHALLNRCPHGGARICTGVITGIAQ 60

Query: 61  SSDPGEIEYTKLGEILRCPWHGWEFDIRTGQSYCDPRRFRVRAYPVSVEPGTNVVKGPYV 120
           SS PG+    + GE LRCPWHGWEF++ TGQS+CDPR  R+R Y V  E G N+VKGPYV
Sbjct: 61  SSGPGDYRLERNGEFLRCPWHGWEFELATGQSWCDPRTTRLRNYDVKRETGGNLVKGPYV 120

Query: 121 AETIKVAVESDYVVVDL 137
           AE   VA+E+DY++++L
Sbjct: 121 AERYPVAIENDYIIIEL 137


>ref|YP_004336270.1| Rieske (2Fe-2S) iron-sulfur domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gb|AEA28417.1| Rieske (2Fe-2S) iron-sulfur domain protein [Pseudonocardia
           dioxanivorans CB1190]
          Length = 145

 Score =  170 bits (431), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 100/139 (71%), Gaps = 2/139 (1%)

Query: 1   MARHVIAPVDELPPGSRKFLEIDGRPIAVFNVKGEFFGLLNRCPHQGAALCEGPLIGLAS 60
           M RHV+A V ++PPGSR  + +DGR I VFNV GEFF + NRCPHQ   LCEG L    S
Sbjct: 1   MTRHVVARVGDVPPGSRVLVTLDGREIGVFNVDGEFFAVRNRCPHQAGPLCEGILTRPVS 60

Query: 61  SSDPGEIEYTKLGEILRCPWHGWEFDIRTGQSYCDPRRFRVRAYPVSVEPGTNVVK--GP 118
           S+ PGE  +T+ G ILRCPWH WEFD+ TG+S+CDP R RVR+YPV VE G   V+  GP
Sbjct: 61  STRPGEYAFTEEGGILRCPWHQWEFDLATGRSWCDPDRVRVRSYPVVVERGGADVRVPGP 120

Query: 119 YVAETIKVAVESDYVVVDL 137
           Y AET  VAVE +YVVVDL
Sbjct: 121 YTAETFPVAVEDEYVVVDL 139


>ref|NP_774249.1| Rieske (2Fe-2S) domain-containing protein [Bradyrhizobium japonicum
           USDA 110]
 dbj|BAC52874.1| rieske [2Fe-2S] domain protein [Bradyrhizobium japonicum USDA 110]
          Length = 148

 Score =  170 bits (431), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 75/137 (54%), Positives = 103/137 (75%)

Query: 1   MARHVIAPVDELPPGSRKFLEIDGRPIAVFNVKGEFFGLLNRCPHQGAALCEGPLIGLAS 60
           MARH++A   E+PPG  K +++ GR I VF+V GEFF LLNRCPH+GA L +   +   +
Sbjct: 12  MARHIVARTSEIPPGGNKVVDVAGRDIVVFHVNGEFFALLNRCPHEGAPLDKAACVARLT 71

Query: 61  SSDPGEIEYTKLGEILRCPWHGWEFDIRTGQSYCDPRRFRVRAYPVSVEPGTNVVKGPYV 120
           S +PG  + +++GE+LRCPWHGWEFD+R+GQS+ DP+R R+R+YPV+VE G  + KGPYV
Sbjct: 72  SPEPGIYQRSRVGEMLRCPWHGWEFDMRSGQSWFDPKRVRIRSYPVAVERGDELQKGPYV 131

Query: 121 AETIKVAVESDYVVVDL 137
           AET  V VE  YV+V++
Sbjct: 132 AETFPVHVEDSYVIVEV 148


>ref|ZP_08628891.1| hypothetical protein CSIRO_1976 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP08250.1| hypothetical protein CSIRO_1976 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 137

 Score =  153 bits (387), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 92/137 (67%)

Query: 1   MARHVIAPVDELPPGSRKFLEIDGRPIAVFNVKGEFFGLLNRCPHQGAALCEGPLIGLAS 60
           MA+  +  V ++PPG RK + + GR I VFNVKG+F+ LLNRCPH+GA L  G + GL  
Sbjct: 1   MAKEKVGLVRDIPPGHRKVVTVRGREIVVFNVKGDFYALLNRCPHEGANLSRGIITGLPE 60

Query: 61  SSDPGEIEYTKLGEILRCPWHGWEFDIRTGQSYCDPRRFRVRAYPVSVEPGTNVVKGPYV 120
           SS PG  + ++ GEILRCPWHGWEFDI+TG+SYCDP+R   R Y  SVE     V+G   
Sbjct: 61  SSAPGCYKLSRPGEILRCPWHGWEFDIKTGKSYCDPQRLFTRQYKTSVESSCERVEGHLT 120

Query: 121 AETIKVAVESDYVVVDL 137
           AET  V VE   V V++
Sbjct: 121 AETFPVVVEEATVFVEV 137