BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0034.p (377 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768962.1| citrate utilization protein B [Bradyrhizobium j... 582 e-164 ref|YP_001240174.1| putative citrate utilization protein B (citB... 532 e-149 ref|YP_001205512.1| putative citrate utilization protein B (citB... 516 e-144 ref|YP_002495135.1| CitB domain-containing protein [Methylobacte... 503 e-140 ref|YP_002288003.1| citrate utilization protein B [Oligotropha c... 489 e-136 >ref|NP_768962.1| citrate utilization protein B [Bradyrhizobium japonicum USDA 110] dbj|BAC47587.1| citrate utilization protein B [Bradyrhizobium japonicum USDA 110] Length = 366 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 296/363 (81%), Positives = 319/363 (87%) Query: 11 MHGTRILQEADRLMTVCNSCRYCEGLCAVFPAMEMRRAFSDGDLNYLANLCHGCGACYTD 70 MHGT+IL EADRLMTVCNSCRYCEGLCAVFPAMEMRRAFSDGDLNYLANLCH CGACY D Sbjct: 1 MHGTQILDEADRLMTVCNSCRYCEGLCAVFPAMEMRRAFSDGDLNYLANLCHSCGACYVD 60 Query: 71 CQFSPPHEFNVNVPKTLAVARAESYAAYAWPRAFAGAFARNGLVISLIAALSVAAFIFGF 130 CQFSPPHEF+VNVPKTLAVARAESYAAYAWPRA +GAFARNGLVIS++AALS+AAFIFGF Sbjct: 61 CQFSPPHEFDVNVPKTLAVARAESYAAYAWPRALSGAFARNGLVISIVAALSMAAFIFGF 120 Query: 131 AAVNDRGELTGIHTGPGAFYKLMPHNAMALLFGAALLYAILALVMGVRAFWRDIGEPVGM 190 AA+NDR L G+HTGPGAFYKLMPHNAMA LF AALLYAILALVM VRAFWRDIG P+G Sbjct: 121 AALNDRSVLFGVHTGPGAFYKLMPHNAMAALFSAALLYAILALVMSVRAFWRDIGTPIGG 180 Query: 191 TTDAKALLQAVRDAGELRYLDGGGVGCFNEDDQPTDRRKLYHHFTFYGFALCFAATCVGT 250 D ++ QA+RDAGELRYL GGGVGC+NEDD+PTDRRKLYHH TFYGF LCFAAT V T Sbjct: 181 RADGGSIFQAIRDAGELRYLHGGGVGCYNEDDKPTDRRKLYHHLTFYGFLLCFAATSVAT 240 Query: 251 LYHYLLAREAPYAWWDLPVVLGTLGGVGLVVGPLGLLSEKWKRDRVLVDEQRMGMDTAFI 310 LYHYLL REAPY WWDLPVVLG LGG+GL+VGP+GL K +R L+DE GMD FI Sbjct: 241 LYHYLLGREAPYPWWDLPVVLGALGGIGLIVGPIGLYVAKLRRAPELLDENSYGMDVGFI 300 Query: 311 LMLFLTSITGLALLLWRETAAMGPLLALHLGVVFALFITMPYGKFVHGIYRFVALVRYAR 370 MLFLT +TG+ LLL RE AAMGPLLALHLG VFALFITMPYGKFVHGIYRF ALVRYA+ Sbjct: 301 AMLFLTGLTGMLLLLLREAAAMGPLLALHLGAVFALFITMPYGKFVHGIYRFAALVRYAQ 360 Query: 371 ERQ 373 ER+ Sbjct: 361 ERR 363 >ref|YP_001240174.1| putative citrate utilization protein B (citB) [Bradyrhizobium sp. BTAi1] gb|ABQ36268.1| putative citrate utilization protein B (citB) [Bradyrhizobium sp. BTAi1] Length = 372 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 254/363 (69%), Positives = 287/363 (79%) Query: 11 MHGTRILQEADRLMTVCNSCRYCEGLCAVFPAMEMRRAFSDGDLNYLANLCHGCGACYTD 70 M + L EADRLMT+CNSCRYCEGLCAVFPAME+RRAF+ GDLNY ANLCH CGACY D Sbjct: 1 MQRSATLTEADRLMTICNSCRYCEGLCAVFPAMEIRRAFTSGDLNYFANLCHSCGACYVD 60 Query: 71 CQFSPPHEFNVNVPKTLAVARAESYAAYAWPRAFAGAFARNGLVISLIAALSVAAFIFGF 130 CQFSPPHEF+V VP LA AR ESYA YAWPRA A F NGL I+LI LS+AAFI GF Sbjct: 61 CQFSPPHEFDVRVPAVLAKARRESYADYAWPRALAPLFRSNGLAIALITVLSIAAFILGF 120 Query: 131 AAVNDRGELTGIHTGPGAFYKLMPHNAMALLFGAALLYAILALVMGVRAFWRDIGEPVGM 190 A+ND L GPG+FY LMPHN MALLFGAA L+A++A V G RAFW DIGE Sbjct: 121 VALNDSAALFARRHGPGSFYALMPHNMMALLFGAAFLWAVVAFVNGARAFWNDIGEQAST 180 Query: 191 TTDAKALLQAVRDAGELRYLDGGGVGCFNEDDQPTDRRKLYHHFTFYGFALCFAATCVGT 250 + LLQAVRDA LRYLDGGGVGC+NED++P D R+LYHH TFYGF LCFA+T V T Sbjct: 181 LARPRPLLQAVRDAASLRYLDGGGVGCYNEDERPNDNRRLYHHLTFYGFLLCFASTSVAT 240 Query: 251 LYHYLLAREAPYAWWDLPVVLGTLGGVGLVVGPLGLLSEKWKRDRVLVDEQRMGMDTAFI 310 LYHYLL REAPY +WDLPVVLGTLGG+G+++GP+GL + K KRD L+D GMD AF+ Sbjct: 241 LYHYLLHREAPYPFWDLPVVLGTLGGLGIMIGPIGLYAAKRKRDAALMDPASRGMDVAFL 300 Query: 311 LMLFLTSITGLALLLWRETAAMGPLLALHLGVVFALFITMPYGKFVHGIYRFVALVRYAR 370 ML LT +TGLA+LL RET+AMG LLALHLG VFALFIT+PYGKFVHG+YRF+ALVRYAR Sbjct: 301 AMLVLTGVTGLAVLLLRETSAMGVLLALHLGAVFALFITLPYGKFVHGLYRFMALVRYAR 360 Query: 371 ERQ 373 ER Sbjct: 361 ERH 363 >ref|YP_001205512.1| putative citrate utilization protein B (citB) membrane protein [Bradyrhizobium sp. ORS 278] emb|CAL77286.1| putative citrate utilization protein B (citB); putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 367 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 254/366 (69%), Positives = 292/366 (79%) Query: 11 MHGTRILQEADRLMTVCNSCRYCEGLCAVFPAMEMRRAFSDGDLNYLANLCHGCGACYTD 70 M + L EADRLMT+CNSCRYCEGLCAVFPAMEMRRAF+ GDLNY ANLCH CGACY D Sbjct: 1 MQRSEALTEADRLMTICNSCRYCEGLCAVFPAMEMRRAFTSGDLNYFANLCHSCGACYVD 60 Query: 71 CQFSPPHEFNVNVPKTLAVARAESYAAYAWPRAFAGAFARNGLVISLIAALSVAAFIFGF 130 CQFSPPHEF+V VP LA R ESYA YAWPRA A F RNGL I+L A LS+AAFI GF Sbjct: 61 CQFSPPHEFDVRVPAVLARVRHESYADYAWPRALAPIFKRNGLAIALTAVLSMAAFILGF 120 Query: 131 AAVNDRGELTGIHTGPGAFYKLMPHNAMALLFGAALLYAILALVMGVRAFWRDIGEPVGM 190 A ND L GPG+FY LMPHNAMAL+FGAA L+AI+A V G RAFW+DIGEP Sbjct: 121 VAFNDPAALFATRHGPGSFYALMPHNAMALVFGAAFLWAIVAFVQGTRAFWKDIGEPHAT 180 Query: 191 TTDAKALLQAVRDAGELRYLDGGGVGCFNEDDQPTDRRKLYHHFTFYGFALCFAATCVGT 250 + ++LL+AVRDAG LRYLDGGGVGC+NED++P D R++YHH TFYGF LCFA+T V T Sbjct: 181 LAEPRSLLRAVRDAGSLRYLDGGGVGCYNEDEKPGDTRRVYHHLTFYGFLLCFASTSVAT 240 Query: 251 LYHYLLAREAPYAWWDLPVVLGTLGGVGLVVGPLGLLSEKWKRDRVLVDEQRMGMDTAFI 310 LYHYLL REAPY WDLPVVLGT GG+G+V+GPLGL + K +R+ ++D++ GMD AF+ Sbjct: 241 LYHYLLHREAPYPLWDLPVVLGTFGGLGIVIGPLGLYAAKRRREPEMMDDRSRGMDVAFL 300 Query: 311 LMLFLTSITGLALLLWRETAAMGPLLALHLGVVFALFITMPYGKFVHGIYRFVALVRYAR 370 ML LT +TGL LLL RET AMGPLLALHLG VFALF+TMPYGKFVHG+YRF+ALVRYA Sbjct: 301 AMLVLTGVTGLGLLLLRETGAMGPLLALHLGAVFALFVTMPYGKFVHGLYRFLALVRYAG 360 Query: 371 ERQMMT 376 ER ++ Sbjct: 361 ERHQVS 366 >ref|YP_002495135.1| CitB domain-containing protein [Methylobacterium nodulans ORS 2060] gb|ACL62643.1| CitB domain protein [Methylobacterium nodulans ORS 2060] Length = 398 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 248/370 (67%), Positives = 282/370 (76%), Gaps = 1/370 (0%) Query: 7 GTDAMHGTRILQEADRLMTVCNSCRYCEGLCAVFPAMEMRRAFSDGDLNYLANLCHGCGA 66 GT A H + L EADRLMTVCNSCRYCEGLCAVFPAMEMRR+FSDGDLNYLANLCH CGA Sbjct: 10 GTTAHHASAALAEADRLMTVCNSCRYCEGLCAVFPAMEMRRSFSDGDLNYLANLCHSCGA 69 Query: 67 CYTDCQFSPPHEFNVNVPKTLAVARAESYAAYAWPRAFAGAFARNGLVISLIAALSVAAF 126 C+ DCQFSPPH F+VNVP+ LA R ESYA YAWPRA A FARNG I+LI + VAAF Sbjct: 70 CFYDCQFSPPHAFDVNVPRVLAQVRNESYAHYAWPRALAPLFARNGTAIALITSACVAAF 129 Query: 127 IFGFAAVNDRGELTGIHTGPGAFYKLMPHNAMALLFGAALLYAILALVMGVRAFWRDIGE 186 +FGF A+ND + G G GAFY+LMPHNAMA LFGAA LYA++AL +G+ FWRDIGE Sbjct: 130 LFGFMALNDPKVMFGAQLGEGAFYRLMPHNAMAFLFGAAFLYALVALGLGLLRFWRDIGE 189 Query: 187 PVGMTTDAKALLQAVRDAGELRYLDGGGVGCFNEDDQPT-DRRKLYHHFTFYGFALCFAA 245 D QA +D LRYLDGGG GC N+DD P+ DRR+ YHH TFYGF LCFA+ Sbjct: 190 TRATLQDVGYNWQATQDTLRLRYLDGGGAGCMNQDDNPSKDRRRFYHHLTFYGFMLCFAS 249 Query: 246 TCVGTLYHYLLAREAPYAWWDLPVVLGTLGGVGLVVGPLGLLSEKWKRDRVLVDEQRMGM 305 T V TLYHYLL REAPY WWDLPVVLGTLGG+GLV+GPLGLL K RD + + GM Sbjct: 250 TSVATLYHYLLGREAPYPWWDLPVVLGTLGGIGLVIGPLGLLRAKAVRDETMRAPEGRGM 309 Query: 306 DTAFILMLFLTSITGLALLLWRETAAMGPLLALHLGVVFALFITMPYGKFVHGIYRFVAL 365 + AF LMLF TGLALL+ R T AMG LLA+HLG VF F+TMPYGKFVHG+YR+ AL Sbjct: 310 ENAFTLMLFALGTTGLALLVLRSTPAMGTLLAVHLGAVFGFFVTMPYGKFVHGLYRYAAL 369 Query: 366 VRYARERQMM 375 VR+A+ER+ + Sbjct: 370 VRFAKERKAL 379 >ref|YP_002288003.1| citrate utilization protein B [Oligotropha carboxidovorans OM5] gb|ACI92138.1| citrate utilization protein B [Oligotropha carboxidovorans OM5] Length = 394 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 253/367 (68%), Positives = 296/367 (80%) Query: 5 EGGTDAMHGTRILQEADRLMTVCNSCRYCEGLCAVFPAMEMRRAFSDGDLNYLANLCHGC 64 E MH + L+EADRLMT+CNSCRYCEGLCAVFPAME+RR+F+DGDLNYLANLCH C Sbjct: 6 EKARPIMHSSETLKEADRLMTICNSCRYCEGLCAVFPAMELRRSFTDGDLNYLANLCHAC 65 Query: 65 GACYTDCQFSPPHEFNVNVPKTLAVARAESYAAYAWPRAFAGAFARNGLVISLIAALSVA 124 GACY DCQFSPPHEFNVNVP+ +A RAESY +YAWP G F RNGL I+L+ ALS+A Sbjct: 66 GACYHDCQFSPPHEFNVNVPRVMAEVRAESYQSYAWPHFARGIFERNGLAIALLTALSIA 125 Query: 125 AFIFGFAAVNDRGELTGIHTGPGAFYKLMPHNAMALLFGAALLYAILALVMGVRAFWRDI 184 FI GF +D + G HTG GAFY+LMPHNAMA LFGA LY +LAL MG RAFW+DI Sbjct: 126 VFIGGFVGWHDPAVMFGKHTGEGAFYRLMPHNAMAGLFGAISLYVLLALFMGFRAFWKDI 185 Query: 185 GEPVGMTTDAKALLQAVRDAGELRYLDGGGVGCFNEDDQPTDRRKLYHHFTFYGFALCFA 244 G +T D+++L A+ D LRYLDGGGVGCFN+D+ PTD R+LYHH TFYGFALCFA Sbjct: 186 GAVPSVTLDSRSLFTALHDVLRLRYLDGGGVGCFNKDENPTDGRRLYHHLTFYGFALCFA 245 Query: 245 ATCVGTLYHYLLAREAPYAWWDLPVVLGTLGGVGLVVGPLGLLSEKWKRDRVLVDEQRMG 304 AT V TLYHYLL REAPY W+DLPVVLG LGG+GL++GP+GL+ K+ R+ ++VD+ R+G Sbjct: 246 ATSVATLYHYLLGREAPYPWYDLPVVLGALGGIGLLIGPVGLMKAKFLRNPMMVDKPRLG 305 Query: 305 MDTAFILMLFLTSITGLALLLWRETAAMGPLLALHLGVVFALFITMPYGKFVHGIYRFVA 364 MDTAFI MLFLTS+TGL LL+ R T AMG LLALHLG+VF+LF+TMPYGKFVHG+YR VA Sbjct: 306 MDTAFIAMLFLTSLTGLLLLVLRATPAMGTLLALHLGIVFSLFLTMPYGKFVHGLYRAVA 365 Query: 365 LVRYARE 371 LVRYA E Sbjct: 366 LVRYAWE 372