BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0030.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774544.1| DNA-binding transcriptional activator GcvA [Bra... 528 e-148 ref|YP_533591.1| DNA-binding transcriptional activator GcvA [Rho... 482 e-134 ref|YP_001242925.1| DNA-binding transcriptional activator GcvA [... 478 e-133 ref|YP_001203070.1| DNA-binding transcriptional activator GcvA [... 460 e-127 ref|YP_782740.1| DNA-binding transcriptional activator GcvA [Rho... 450 e-124 >ref|NP_774544.1| DNA-binding transcriptional activator GcvA [Bradyrhizobium japonicum USDA 110] dbj|BAC53169.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 299 Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust. Identities = 254/291 (87%), Positives = 276/291 (94%) Query: 1 MTSRLPSLNGLRAFEAAARHMSFTLAASELNVTQTAISHQIRRLEEELGVRLFIRQNRSL 60 MT+RLPSLNGLRAFEAAARH+SFTLAASELNVTQTAISHQIRRLEEELG+RLFIRQNR+L Sbjct: 1 MTARLPSLNGLRAFEAAARHLSFTLAASELNVTQTAISHQIRRLEEELGIRLFIRQNRAL 60 Query: 61 SLTPEATEYLPGVRAAFNDLRLAADRLLRRDDDHVLTVSTLASLAAKWLLPRLSAFQEAH 120 +LTPEA +YLPGVRAAFNDLRLA DRLLRRDDD VLT+STLASLAAKWLLPRL+ FQE H Sbjct: 61 ALTPEARDYLPGVRAAFNDLRLATDRLLRRDDDKVLTLSTLASLAAKWLLPRLTDFQEQH 120 Query: 121 SGIDVRITTSTSLVDFQRDKVDAAIRYGRGQWAGLRADWLMADELFPVCSPSLLQGTKPL 180 GIDVRITTSTSLVDFQRD VDAAIRYGRGQW GLRADWLMADELFPVCSPSLL+G KPL Sbjct: 121 PGIDVRITTSTSLVDFQRDDVDAAIRYGRGQWPGLRADWLMADELFPVCSPSLLRGDKPL 180 Query: 181 KCPEDLRDHTLLHTSNANSDDWRLWLTAAGLPTDISKQPGVTFDLLFVTIQAAIDGIGIA 240 + PEDLR+H LLHTSNANSDDWRLWLTAAGLP DI+KQPG+TFD++F+TIQAAIDGIG+A Sbjct: 181 QRPEDLRNHPLLHTSNANSDDWRLWLTAAGLPADIAKQPGITFDMIFMTIQAAIDGIGVA 240 Query: 241 MGRTSYVQDDIAKGRLVVPFKIALPADAGFYLVSPQGRADTPKLSAFRSWL 291 MGRTSYVQDDIAKGRLVVPFKIALPADAGFYLV+P+GR + PKL+AFR W+ Sbjct: 241 MGRTSYVQDDIAKGRLVVPFKIALPADAGFYLVAPEGRREAPKLAAFRQWI 291 >ref|YP_533591.1| DNA-binding transcriptional activator GcvA [Rhodopseudomonas palustris BisB18] gb|ABD89272.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisB18] Length = 314 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 231/299 (77%), Positives = 269/299 (89%) Query: 1 MTSRLPSLNGLRAFEAAARHMSFTLAASELNVTQTAISHQIRRLEEELGVRLFIRQNRSL 60 MT+RLPSLNGLRAFEAAARH+SFT AA+ELNVTQTAISHQIRRLEEELG++LF+RQNR+L Sbjct: 1 MTARLPSLNGLRAFEAAARHLSFTSAAAELNVTQTAISHQIRRLEEELGIQLFVRQNRTL 60 Query: 61 SLTPEATEYLPGVRAAFNDLRLAADRLLRRDDDHVLTVSTLASLAAKWLLPRLSAFQEAH 120 +LTP+A +YLPGVRAAFNDLRLA DRLLR+D VLT+STLASLAAKWLLPRLSAFQEAH Sbjct: 61 ALTPQARDYLPGVRAAFNDLRLATDRLLRKDAACVLTISTLASLAAKWLLPRLSAFQEAH 120 Query: 121 SGIDVRITTSTSLVDFQRDKVDAAIRYGRGQWAGLRADWLMADELFPVCSPSLLQGTKPL 180 IDVRITTST+LVDF++ VDAAIRYGRGQW GLRADWLMAD+LFPVCSP+LLQG KPL Sbjct: 121 PAIDVRITTSTALVDFRKGDVDAAIRYGRGQWPGLRADWLMADQLFPVCSPALLQGKKPL 180 Query: 181 KCPEDLRDHTLLHTSNANSDDWRLWLTAAGLPTDISKQPGVTFDLLFVTIQAAIDGIGIA 240 + P+DL +H+LL++S DDWRLWLTAAGLP DISKQPG++FDL+F+T+QAAIDG+G+A Sbjct: 181 RSPQDLAEHSLLYSSGGYDDDWRLWLTAAGLPADISKQPGLSFDLIFMTVQAAIDGLGVA 240 Query: 241 MGRTSYVQDDIAKGRLVVPFKIALPADAGFYLVSPQGRADTPKLSAFRSWLGTTAHAAP 299 +GRTSYV+ DIAKGRLVVPF+I LP + GFYLVSP+ RA+TPKLSAFR WL + + P Sbjct: 241 IGRTSYVEADIAKGRLVVPFQIKLPDEWGFYLVSPEARAETPKLSAFRQWLLASIPSQP 299 >ref|YP_001242925.1| DNA-binding transcriptional activator GcvA [Bradyrhizobium sp. BTAi1] gb|ABQ39019.1| transcriptional regulator, LysR family [Bradyrhizobium sp. BTAi1] Length = 306 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/293 (77%), Positives = 262/293 (89%) Query: 4 RLPSLNGLRAFEAAARHMSFTLAASELNVTQTAISHQIRRLEEELGVRLFIRQNRSLSLT 63 RLPSLNGLRAFEAAARH+SFT AASELNVTQTAISHQI+RLE+ELG+RLF+RQNRSL+LT Sbjct: 3 RLPSLNGLRAFEAAARHLSFTRAASELNVTQTAISHQIKRLEDELGIRLFVRQNRSLALT 62 Query: 64 PEATEYLPGVRAAFNDLRLAADRLLRRDDDHVLTVSTLASLAAKWLLPRLSAFQEAHSGI 123 P+A +YLP VRAAF+DLRLA +RL+R+D+ VLTVST+ASLAAKWLLPRL AFQEAH GI Sbjct: 63 PQARDYLPLVRAAFDDLRLATERLVRKDNGKVLTVSTIASLAAKWLLPRLIAFQEAHPGI 122 Query: 124 DVRITTSTSLVDFQRDKVDAAIRYGRGQWAGLRADWLMADELFPVCSPSLLQGTKPLKCP 183 DVRITTSTSLVDF+ D VDAAIRYGRG W G RA+WLMADELFPVCSP+LLQG KPL+CP Sbjct: 123 DVRITTSTSLVDFRTDDVDAAIRYGRGHWPGARAEWLMADELFPVCSPALLQGDKPLRCP 182 Query: 184 EDLRDHTLLHTSNANSDDWRLWLTAAGLPTDISKQPGVTFDLLFVTIQAAIDGIGIAMGR 243 EDL HTLL S DDWRLWLTAAGLP +IS+Q ++FDLLF+T+QAAIDG+G+A+GR Sbjct: 183 EDLAHHTLLQASGGYDDDWRLWLTAAGLPVEISRQSSLSFDLLFMTVQAAIDGLGVAIGR 242 Query: 244 TSYVQDDIAKGRLVVPFKIALPADAGFYLVSPQGRADTPKLSAFRSWLGTTAH 296 T+YVQDDIAKGRLVVPFK+ALP+DAGFYLV+P+GR D PKL+AFR WL + A Sbjct: 243 TAYVQDDIAKGRLVVPFKMALPSDAGFYLVTPEGRTDAPKLTAFRQWLKSAAQ 295 >ref|YP_001203070.1| DNA-binding transcriptional activator GcvA [Bradyrhizobium sp. ORS 278] emb|CAL74833.1| Transcriptional Regulator, LysR family; putative Glycine cleavage system transcriptional activator (Gcv operon activator) [Bradyrhizobium sp. ORS 278] Length = 306 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/294 (74%), Positives = 258/294 (87%) Query: 3 SRLPSLNGLRAFEAAARHMSFTLAASELNVTQTAISHQIRRLEEELGVRLFIRQNRSLSL 62 +RLPSLNGLRAFEAAARH+SFT AASELNVTQTAISHQI+RLE+ELG+RLF+RQNRSL+L Sbjct: 2 ARLPSLNGLRAFEAAARHLSFTRAASELNVTQTAISHQIKRLEDELGIRLFLRQNRSLAL 61 Query: 63 TPEATEYLPGVRAAFNDLRLAADRLLRRDDDHVLTVSTLASLAAKWLLPRLSAFQEAHSG 122 TP+A +YLP VRAAF+DLRLA +RL+R+D+ VLTVST+ASLAAKWLLPRL+AFQEAH Sbjct: 62 TPQARDYLPLVRAAFDDLRLATERLVRKDNAKVLTVSTIASLAAKWLLPRLTAFQEAHPT 121 Query: 123 IDVRITTSTSLVDFQRDKVDAAIRYGRGQWAGLRADWLMADELFPVCSPSLLQGTKPLKC 182 IDVRITTST LVDF++D VDAAIRYGRG W +RA+WLMADELFPVCSP+LLQGTKPL+ Sbjct: 122 IDVRITTSTGLVDFRKDDVDAAIRYGRGHWPAVRAEWLMADELFPVCSPALLQGTKPLRS 181 Query: 183 PEDLRDHTLLHTSNANSDDWRLWLTAAGLPTDISKQPGVTFDLLFVTIQAAIDGIGIAMG 242 PEDL HTLL S DDWRLWLTAAGLP ++S+Q ++FDL +T+QAAIDG+G+A+G Sbjct: 182 PEDLAHHTLLQASGGYDDDWRLWLTAAGLPVEMSRQSRLSFDLSLMTVQAAIDGLGVAIG 241 Query: 243 RTSYVQDDIAKGRLVVPFKIALPADAGFYLVSPQGRADTPKLSAFRSWLGTTAH 296 RT+YVQDDIAKGRLVVPF++ LP+DAGFYLV+P+ R D PKL AFR WL + A Sbjct: 242 RTAYVQDDIAKGRLVVPFEMMLPSDAGFYLVTPEARTDPPKLKAFRQWLKSAAQ 295 >ref|YP_782740.1| DNA-binding transcriptional activator GcvA [Rhodopseudomonas palustris BisA53] gb|ABJ07760.1| transcriptional regulator, LysR family [Rhodopseudomonas palustris BisA53] Length = 310 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/297 (72%), Positives = 252/297 (84%) Query: 1 MTSRLPSLNGLRAFEAAARHMSFTLAASELNVTQTAISHQIRRLEEELGVRLFIRQNRSL 60 MT+RLPSLNGLRAFEAAARH+SFT AA+ELNVTQTAISHQI+RLE+ELG++LF+RQNRSL Sbjct: 1 MTARLPSLNGLRAFEAAARHLSFTTAATELNVTQTAISHQIKRLEQELGIQLFVRQNRSL 60 Query: 61 SLTPEATEYLPGVRAAFNDLRLAADRLLRRDDDHVLTVSTLASLAAKWLLPRLSAFQEAH 120 +LTP+A +YLPG+RAAFNDLRLA DRLLR+D+ +VLTVSTL SLA KWLLPRL AFQ AH Sbjct: 61 ALTPQARDYLPGIRAAFNDLRLATDRLLRKDNANVLTVSTLTSLAVKWLLPRLPAFQAAH 120 Query: 121 SGIDVRITTSTSLVDFQRDKVDAAIRYGRGQWAGLRADWLMADELFPVCSPSLLQGTKPL 180 IDVRITTST+LVDF+ D VDAAIRYGRGQW GL+A WLMADE+FPVCSP+LL GTKPL Sbjct: 121 PAIDVRITTSTALVDFRSDDVDAAIRYGRGQWPGLQASWLMADEMFPVCSPALLAGTKPL 180 Query: 181 KCPEDLRDHTLLHTSNANSDDWRLWLTAAGLPTDISKQPGVTFDLLFVTIQAAIDGIGIA 240 K P+DL HTLLHTS DDWRLWLTAAG D++ G++FDL+F+T+QAAIDG+G+A Sbjct: 181 KTPQDLAHHTLLHTSGGYDDDWRLWLTAAGFSADLAPPRGLSFDLIFLTVQAAIDGLGVA 240 Query: 241 MGRTSYVQDDIAKGRLVVPFKIALPADAGFYLVSPQGRADTPKLSAFRSWLGTTAHA 297 MGRTSYV+ D+A GRLV PF LP + GFYLVSP A+ PK++AFR WL A A Sbjct: 241 MGRTSYVEADLAAGRLVAPFATKLPDEWGFYLVSPIATAEAPKIAAFRQWLIAAAQA 297