BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0021.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001203077.1| amidase [Bradyrhizobium sp. ORS 278] >gi|146... 355 4e-96 ref|YP_001242918.1| amidase [Bradyrhizobium sp. BTAi1] >gi|14641... 353 2e-95 ref|NP_774536.1| amidase [Bradyrhizobium japonicum USDA 110] >gi... 348 5e-94 ref|NP_947046.1| amidase [Rhodopseudomonas palustris CGA009] >gi... 341 9e-92 ref|YP_485298.1| amidase [Rhodopseudomonas palustris HaA2] >gi|8... 338 7e-91 >ref|YP_001203077.1| amidase [Bradyrhizobium sp. ORS 278] emb|CAL74840.1| putative amidase [Bradyrhizobium sp. ORS 278] Length = 489 Score = 355 bits (912), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 194/269 (72%), Positives = 225/269 (83%), Gaps = 9/269 (3%) Query: 1 MTVKESYNVAGLPTTWGFLPHKDFVATEDALSIQRVKDAGGVILGKTNVPVGLADWQSYN 60 +TVKES+NVAGLPTTWGF KDF+A EDAL++ RVKDAGG+++GKTNVP+ L DWQSYN Sbjct: 78 LTVKESFNVAGLPTTWGFPQQKDFIAAEDALTVARVKDAGGIVVGKTNVPIALGDWQSYN 137 Query: 61 EIYGTTNNPYDLGRTPGGSSGGSSAALAAGYGALSLGSDIGGSLRVPAFHCGVYAHKPTF 120 +IYGTTNNPYDLGRTPGGSSGGSSAALAAGYG+LSLGSDIGGSLRVPAFHCGV AHKPT+ Sbjct: 138 DIYGTTNNPYDLGRTPGGSSGGSSAALAAGYGSLSLGSDIGGSLRVPAFHCGVTAHKPTY 197 Query: 121 ALLPSRGHTAPPAPPIIYERDLAVTGPMARGAADLSLLFDVMAVPDPLDAGKAYRLDLPA 180 L+P+RGHT PP PP+ E DLAV GPMAR AADL+LL DVMA PDPL+AGKAYRL+LP Sbjct: 198 GLVPTRGHTPPPFPPLPNEADLAVVGPMARSAADLALLLDVMAGPDPLEAGKAYRLELPP 257 Query: 181 ARHASLKDFRILVIDTDPVLP---------DKLASHLDKAGAKISRSSPLLPDFAASSRL 231 ARH L+DFR+LV+ + P+LP ++LA++L KAG I SPLLPDFA+SSRL Sbjct: 258 ARHTRLQDFRVLVVASHPLLPTDTAVRGAIERLAANLAKAGVSIVMESPLLPDFASSSRL 317 Query: 232 YMRMLLSFLAATFPPEVYAGACAAAAALP 260 YMR+LL FL AT PP+V+AGA AAA LP Sbjct: 318 YMRLLLGFLGATMPPDVHAGAIQAAAHLP 346 >ref|YP_001242918.1| amidase [Bradyrhizobium sp. BTAi1] gb|ABQ39012.1| putative amidase [Bradyrhizobium sp. BTAi1] Length = 489 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 196/269 (72%), Positives = 225/269 (83%), Gaps = 9/269 (3%) Query: 1 MTVKESYNVAGLPTTWGFLPHKDFVATEDALSIQRVKDAGGVILGKTNVPVGLADWQSYN 60 +TVKESYNVAGLPTTWGF K+F+A EDAL++ RVKDAGG++LGKTNVP+GL DWQSYN Sbjct: 78 LTVKESYNVAGLPTTWGFPQQKNFIAAEDALTVTRVKDAGGIVLGKTNVPIGLGDWQSYN 137 Query: 61 EIYGTTNNPYDLGRTPGGSSGGSSAALAAGYGALSLGSDIGGSLRVPAFHCGVYAHKPTF 120 +IYGTTNNP+DLGRTPGGSSGGS+AALAAGYG+LSLGSDIGGSLRVPAFHCG+ AHKPT+ Sbjct: 138 DIYGTTNNPFDLGRTPGGSSGGSAAALAAGYGSLSLGSDIGGSLRVPAFHCGITAHKPTY 197 Query: 121 ALLPSRGHTAPPAPPIIYERDLAVTGPMARGAADLSLLFDVMAVPDPLDAGKAYRLDLPA 180 L+P+RGHT PP P+ E DLAV GPMAR AADLSLL DVMA PDPL+AGKAYRL LP Sbjct: 198 GLVPTRGHTPPPFQPLPNEADLAVVGPMARSAADLSLLLDVMAGPDPLEAGKAYRLQLPP 257 Query: 181 ARHASLKDFRILVIDTDPVLP---------DKLASHLDKAGAKISRSSPLLPDFAASSRL 231 ARHA L+D+RILVI +DPVLP ++LA+ L K G ++R SPLLPDFAASSRL Sbjct: 258 ARHARLQDYRILVIASDPVLPTDGAVRGAIERLAADLAKLGVNVARESPLLPDFAASSRL 317 Query: 232 YMRMLLSFLAATFPPEVYAGACAAAAALP 260 YMR+LL FL A PP+V+AGA AAA LP Sbjct: 318 YMRLLLGFLGAIMPPDVHAGAGQAAAQLP 346 >ref|NP_774536.1| amidase [Bradyrhizobium japonicum USDA 110] dbj|BAC53161.1| blr7896 [Bradyrhizobium japonicum USDA 110] Length = 490 Score = 348 bits (894), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 190/273 (69%), Positives = 217/273 (79%), Gaps = 9/273 (3%) Query: 1 MTVKESYNVAGLPTTWGFLPHKDFVATEDALSIQRVKDAGGVILGKTNVPVGLADWQSYN 60 +T+KES+N+AGLPTTWGF+P KDF EDAL + R+K AGGVILGKTNVPVGL+DWQSYN Sbjct: 78 LTIKESFNIAGLPTTWGFVPQKDFKPVEDALPVARIKQAGGVILGKTNVPVGLSDWQSYN 137 Query: 61 EIYGTTNNPYDLGRTPGGSSGGSSAALAAGYGALSLGSDIGGSLRVPAFHCGVYAHKPTF 120 +IYGTTNNPYDLGRTPGGSSGGSSAALAAGY AL+ GSDIGGSLRVPAFHCG++AHKPT Sbjct: 138 DIYGTTNNPYDLGRTPGGSSGGSSAALAAGYCALATGSDIGGSLRVPAFHCGIFAHKPTI 197 Query: 121 ALLPSRGHTAPPAPPIIYERDLAVTGPMARGAADLSLLFDVMAVPDPLDAGKAYRLDLPA 180 L +RG T PP P I E DLAV GPMAR AADLSLL DVMA PDPLDAG AY+LDLP Sbjct: 198 NLCAARGETPPPFPAIPREGDLAVIGPMARTAADLSLLLDVMAGPDPLDAGVAYKLDLPV 257 Query: 181 ARHASLKDFRILVIDTDPVLP---------DKLASHLDKAGAKISRSSPLLPDFAASSRL 231 ARH SL+DFR+LVI++ P+LP DKLA+ L KAG ++R SPLLPDFA +SRL Sbjct: 258 ARHQSLRDFRVLVIESHPLLPTDRDVRDAIDKLATDLAKAGVTVARESPLLPDFADTSRL 317 Query: 232 YMRMLLSFLAATFPPEVYAGACAAAAALPAGDQ 264 YMRMLL FL A F P+ A + A A+ L D+ Sbjct: 318 YMRMLLGFLGAFFLPDELADSQARASQLSPEDR 350 >ref|NP_947046.1| amidase [Rhodopseudomonas palustris CGA009] emb|CAE27141.1| putative amidase [Rhodopseudomonas palustris CGA009] Length = 500 Score = 341 bits (875), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 197/272 (72%), Positives = 223/272 (81%), Gaps = 9/272 (3%) Query: 1 MTVKESYNVAGLPTTWGFLPHKDFVATEDALSIQRVKDAGGVILGKTNVPVGLADWQSYN 60 MTVKES+NVAGLPTTWGF+ K+FVA DAL+++RVK AGGVILGKTNVPV L DWQSYN Sbjct: 88 MTVKESFNVAGLPTTWGFVEQKNFVAAADALAVERVKAAGGVILGKTNVPVALGDWQSYN 147 Query: 61 EIYGTTNNPYDLGRTPGGSSGGSSAALAAGYGALSLGSDIGGSLRVPAFHCGVYAHKPTF 120 EIYGTT NPYDLGRTPGGSSGGSSAALAAG+GALSLGSDIGGSLRVPA +CGVYAHKPTF Sbjct: 148 EIYGTTGNPYDLGRTPGGSSGGSSAALAAGFGALSLGSDIGGSLRVPAHYCGVYAHKPTF 207 Query: 121 ALLPSRGHTAPPAPPIIYERDLAVTGPMARGAADLSLLFDVMAVPDPLDAGKAYRLDLPA 180 L P+RGHT PP PP+ RDL+V GPMAR AADL+LL DV+A DP+ G AY+LDLPA Sbjct: 208 GLCPARGHTPPPFPPLPSNRDLSVIGPMARSAADLALLLDVIAGTDPIFDGIAYQLDLPA 267 Query: 181 ARHASLKDFRILVIDTDPVLPDKLASH---------LDKAGAKISRSSPLLPDFAASSRL 231 ARH +LKDFR+L++DT P+LP A H L KAGA ++RSSPLLPD A +SR+ Sbjct: 268 ARHTALKDFRVLLLDTHPLLPTGAAVHSALQTLADGLTKAGASVTRSSPLLPDLAETSRV 327 Query: 232 YMRMLLSFLAATFPPEVYAGACAAAAALPAGD 263 YMRMLLSFLAA FPP++YAGA A AA L A D Sbjct: 328 YMRMLLSFLAAGFPPDLYAGAQAMAAGLSATD 359 >ref|YP_485298.1| amidase [Rhodopseudomonas palustris HaA2] gb|ABD06387.1| Amidase [Rhodopseudomonas palustris HaA2] Length = 500 Score = 338 bits (867), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 196/279 (70%), Positives = 223/279 (79%), Gaps = 11/279 (3%) Query: 1 MTVKESYNVAGLPTTWGFLPHKDFVATEDALSIQRVKDAGGVILGKTNVPVGLADWQSYN 60 MTVKES+NVAGLPTTWGF+PHKDFVA +DAL+I+RVK AGGVILGKTNVPV L DWQS N Sbjct: 88 MTVKESFNVAGLPTTWGFVPHKDFVAQDDALAIERVKAAGGVILGKTNVPVALGDWQSTN 147 Query: 61 EIYGTTNNPYDLGRTPGGSSGGSSAALAAGYGALSLGSDIGGSLRVPAFHCGVYAHKPTF 120 EIYGTTNNP+DLGRTPGGSSGGSSAALAAGYGALSLGSDIGGSLRVPA +CGVYAHKPTF Sbjct: 148 EIYGTTNNPFDLGRTPGGSSGGSSAALAAGYGALSLGSDIGGSLRVPAHYCGVYAHKPTF 207 Query: 121 ALLPSRGHTAPPAPPIIYERDLAVTGPMARGAADLSLLFDVMAVPDPLDAGKAYRLDLPA 180 L P+RGHT PP PP+ RDL+V GPMAR A DL+LL +VMA PDPL G Y+LDLPA Sbjct: 208 GLCPARGHTPPPLPPLPSNRDLSVIGPMARSATDLALLLEVMAGPDPLFDGIGYKLDLPA 267 Query: 181 ARHASLKDFRILVIDTDPVLPD---------KLASHLDKAGAKISRSSPLLPDFAASSRL 231 RHA+LKDFR+L++D+ P+LP L S L KAG +++R++PLLPD A +SR+ Sbjct: 268 PRHAALKDFRVLLLDSHPLLPTGASVRGAIAALESGLTKAGVRVTRTTPLLPDLAETSRV 327 Query: 232 YMRMLLSFLAATFPPEVYAGACAAAAALPAGDQ--PAGR 268 YMRMLLSFLAA FPPE+ A A L A D PA R Sbjct: 328 YMRMLLSFLAAGFPPEILAEVQGAVTGLDAADDSLPAER 366