BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0018.p (277 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07027496.1| conserved hypothetical protein [Afipia sp. 1N... 343 1e-92 ref|YP_002755518.1| hypothetical protein ACP_2487 [Acidobacteriu... 167 1e-39 ref|YP_003523873.1| hypothetical protein Slit_1249 [Sideroxydans... 162 4e-38 ref|YP_003749060.1| hypothetical protein RPSI07_mp0045 [Ralstoni... 151 1e-34 ref|YP_001899239.1| hypothetical protein Rpic_1669 [Ralstonia pi... 150 3e-34 >ref|ZP_07027496.1| conserved hypothetical protein [Afipia sp. 1NLS2] gb|EFI51252.1| conserved hypothetical protein [Afipia sp. 1NLS2] Length = 235 Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 164/206 (79%), Positives = 182/206 (88%) Query: 46 GQKDPPFPGGFASNHSLNGTPEFAYGMTDWWELGLYLPFAVQDRQFLSDGFKLRTLFVSP 105 GQ PPFPG F S+ SLNGTPEFAYG+TDWWELG YLPFAVQDRQFLSDGFKLRTLFVSP Sbjct: 4 GQSLPPFPGSFRSDGSLNGTPEFAYGLTDWWELGFYLPFAVQDRQFLSDGFKLRTLFVSP 63 Query: 106 NADKRNLFYGINFEFSYETPKFAQTRFGMEIRPIIGMRNADYEFIVNPIVDIGFGKHGEA 165 NA +R FYG+NFE YETPKF+QTR+G+EIRPIIGMR DYEFIVNPIVDIG G+ GEA Sbjct: 64 NAGQREFFYGVNFELGYETPKFSQTRWGLEIRPIIGMRKGDYEFIVNPIVDIGLGRLGEA 123 Query: 166 DFAPAARVARKLKDDLFVGLEYYADFGEIGAFSPLAEQQHTLFAVTDFKLGEFDVNFGVG 225 DFAPA R A+K+ D+ VGLEYYADFGEIG F+ + +QQHTLFAVTDFK G+FDVNFGVG Sbjct: 124 DFAPAFRAAKKVAPDVQVGLEYYADFGEIGRFAAVRDQQHTLFAVTDFKAGDFDVNFGVG 183 Query: 226 YGLTPASDRLVVKTIIGYAFPVPGAK 251 YGLTPASDR+V+KTIIGYAFPVPG+K Sbjct: 184 YGLTPASDRIVIKTIIGYAFPVPGSK 209 >ref|YP_002755518.1| hypothetical protein ACP_2487 [Acidobacterium capsulatum ATCC 51196] gb|ACO31380.1| hypothetical protein ACP_2487 [Acidobacterium capsulatum ATCC 51196] Length = 297 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 94/228 (41%), Positives = 125/228 (54%), Gaps = 4/228 (1%) Query: 18 TDEIQVYNAGIAEVGQFTIQQHLNYVGIGQKDPPFPGGFASNHSLNGTPEFAYGMTDWWE 77 TDEIQVY+A IA G F + H N+ G+ P +PG +NHS+NG E+AYG+T W E Sbjct: 57 TDEIQVYDATIAPPGTFNLMLHSNFTPEGRTTPAYPGAIIANHSVNGGLEWAYGVTPWLE 116 Query: 78 LGLYLPFAV---QDRQFLSDGFKLRTLFVSPNADKRNLFYGINFEFSYETPKFAQTRFGM 134 GLYLP + R DG K+R LFV P+A + LF+G NFEFS+ + F Sbjct: 117 QGLYLPIYTAYSKGRGGSIDGLKVRELFVRPHAQQHKLFWGSNFEFSFNYHYWESRTFSA 176 Query: 135 EIRPIIGMRNADYEFIVNPIVDIGF-GKHGEADFAPAARVARKLKDDLFVGLEYYADFGE 193 E+RPIIG +E + NP+VD + G G F P +R+ L V E Y FG Sbjct: 177 EVRPIIGANLGKWELMYNPVVDTDYRGGLGGLQFNPESRIVYSLNHKWDVAAEEYDGFGA 236 Query: 194 IGAFSPLAEQQHTLFAVTDFKLGEFDVNFGVGYGLTPASDRLVVKTII 241 FSPL +Q H ++ D +D+ G GYGLT SD+ +K +I Sbjct: 237 FNDFSPLHDQFHEVWGDFDHFGQTWDIEAGAGYGLTAGSDKWTLKFMI 284 >ref|YP_003523873.1| hypothetical protein Slit_1249 [Sideroxydans lithotrophicus ES-1] gb|ADE11486.1| conserved hypothetical protein [Sideroxydans lithotrophicus ES-1] Length = 248 Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 138/244 (56%), Gaps = 6/244 (2%) Query: 3 LAAPPLLGWSGRAHATDEIQVYNAGIAEVGQFTIQQHLNYVGIGQKDPPFPGGFASNHSL 62 L + L G S A A DEIQVY + GQF ++QHLNY G + P +PG +H L Sbjct: 3 LVSCILRGISAYA-AADEIQVYTEELNAPGQFGLEQHLNYSIRGTQVPDYPGQTPPHHVL 61 Query: 63 NGTPEFAYGMTDWWELGLYLPFAVQ--DRQFLSDGFKLRTLFVSPNADKRNLFYGINFEF 120 TPEF+YG+T E GLY+PFA+ FL +G ++R +++P + ++FYG+N E Sbjct: 62 QLTPEFSYGLTRNLEAGLYVPFAITPAGDTFL-NGLRVRLKYIAPRQNDEDMFYGLNVEV 120 Query: 121 SYETPKFAQTRFGMEIRPIIGMRNADYEFIVNPIVDIGFGKH--GEADFAPAARVARKLK 178 + + + + ME+RPIIG R+A + NPI+++G + + F P ++ + Sbjct: 121 GRNSLRTSDSISTMELRPIIGYRDAKWLVSFNPILNLGLAANVSHQPQFEPGLKLTHSVS 180 Query: 179 DDLFVGLEYYADFGEIGAFSPLAEQQHTLFAVTDFKLGEFDVNFGVGYGLTPASDRLVVK 238 + L G EYY +G + P ++ H+L+ V D G +DVNFG+G G A+D V+K Sbjct: 181 EGLRGGFEYYGAYGALNHPLPSNQRSHSLYVVADMAKGGYDVNFGIGRGFVNAADTWVMK 240 Query: 239 TIIG 242 IIG Sbjct: 241 AIIG 244 >ref|YP_003749060.1| hypothetical protein RPSI07_mp0045 [Ralstonia solanacearum PSI07] emb|CBJ34406.1| conserved exported protein of unknown function [Ralstonia solanacearum PSI07] Length = 308 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 128/239 (53%), Gaps = 9/239 (3%) Query: 15 AHAT--DEIQVYNAGIAEVGQFTIQQHLNYVGIGQKDPPFPGGFASNHSLNGTPEFAYGM 72 AHA DEIQVY I G+F ++ HLN G +P +PG + H T EF+YG Sbjct: 70 AHAALPDEIQVYTGDINAPGEFGLELHLNTTPSGIGEPGYPGEVTTPHGWRATAEFSYGW 129 Query: 73 TDWWELGLYLPFAV-QDRQFLSDGFKLRT--LFVSPNADKRNLFYGINFEFSYETPKFAQ 129 + E GLY+P ++ + + G KLR L V P D F GIN E ++ +F Sbjct: 130 SPSLEFGLYIPTSLTRGNTYYVTGPKLRVKWLPVRPE-DGVGRFAGINVELAHVARRFDP 188 Query: 130 TRFGMEIRPIIGMRNADYEFIVNPIVDI---GFGKHGEADFAPAARVARKLKDDLFVGLE 186 +R ME+RPI G ++ + + VNP++D G G+ G D APA ++AR + L G+E Sbjct: 189 SRQAMELRPIYGYQDDRWLWSVNPVLDWSLSGPGRSGVPDAAPAFKIARTVATGLRAGVE 248 Query: 187 YYADFGEIGAFSPLAEQQHTLFAVTDFKLGEFDVNFGVGYGLTPASDRLVVKTIIGYAF 245 YYAD G I +PL QQHT++ D F N G+G GLT A+DR VK I F Sbjct: 249 YYADLGRINRLAPLHAQQHTVYLAFDVDRKPFVFNVGIGRGLTRATDRWTVKWIFEIPF 307 >ref|YP_001899239.1| hypothetical protein Rpic_1669 [Ralstonia pickettii 12J] ref|YP_001900502.1| hypothetical protein Rpic_2947 [Ralstonia pickettii 12J] gb|ACD26807.1| conserved hypothetical protein [Ralstonia pickettii 12J] gb|ACD28070.1| conserved hypothetical protein [Ralstonia pickettii 12J] Length = 262 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 126/228 (55%), Gaps = 7/228 (3%) Query: 19 DEIQVYNAGIAEVGQFTIQQHLNYVGIGQKDPPFPGGFASNHSLNGTPEFAYGMTDWWEL 78 DEIQVY I G+F ++ HLN G +P +P + H GT EF+YG+T EL Sbjct: 30 DEIQVYTGDINAPGEFGLELHLNTTPSGIGEPSYPREVTTPHGWRGTAEFSYGLTPSVEL 89 Query: 79 GLYLPFAV-QDRQFLSDGFKLRTLF--VSPNADKRNLFYGINFEFSYETPKFAQTRFGME 135 G+Y+P A+ ++ + G K+R + V P D F G+N E ++ +F Q++ +E Sbjct: 90 GVYVPTALTRENTYYVTGPKVRVKWMPVRPE-DGVGYFAGLNVELAHVASRFEQSQQAVE 148 Query: 136 IRPIIGMRNADYEFIVNPIVDI---GFGKHGEADFAPAARVARKLKDDLFVGLEYYADFG 192 +RPI G +N + + +NP++D G + G +FAPA ++AR + + GLEYYA G Sbjct: 149 LRPIYGYQNEQWLWALNPVLDWNLSGQDRSGVPEFAPALKIARTVSTGIRAGLEYYAGLG 208 Query: 193 EIGAFSPLAEQQHTLFAVTDFKLGEFDVNFGVGYGLTPASDRLVVKTI 240 + PL EQQHT F D F NFGVG GLT A+DR K I Sbjct: 209 RVDHVLPLYEQQHTAFLAFDVDRKPFVFNFGVGRGLTRATDRWTFKWI 256