BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0017.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774535.1| hypothetical protein blr7895 [Bradyrhizobium ja... 406 e-111 ref|YP_001242916.1| hypothetical protein BBta_7128 [Bradyrhizobi... 388 e-106 ref|ZP_07025759.1| Rubrerythrin [Afipia sp. 1NLS2] >gi|298592701... 386 e-105 ref|YP_001203079.1| hypothetical protein BRADO0924 [Bradyrhizobi... 384 e-104 ref|YP_533947.1| rubrerythrin [Rhodopseudomonas palustris BisB18... 382 e-104 >ref|NP_774535.1| hypothetical protein blr7895 [Bradyrhizobium japonicum USDA 110] dbj|BAC53160.1| blr7895 [Bradyrhizobium japonicum USDA 110] Length = 323 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/230 (90%), Positives = 220/230 (95%) Query: 72 LPLDTIRKEVETMELEAERFYSKAAEKAEDVGVRRLLGDLAEEEKGHEKLAVKLTGEILK 131 L LDTIR+EVETMEL+AERFY KAAE+A+DVGVRRLLGDLAE EKGHE++A KL+ +IL Sbjct: 94 LSLDTIRREVETMELQAERFYVKAAEQAQDVGVRRLLGDLAEAEKGHEEMAAKLSDQILS 153 Query: 132 PDVRAEEDRTRRRMFVLQYVQPGLAGLMDGSVSTLAPLFAAAFATHHNWQTFLVGLAASI 191 PDVRAEEDRT RRMFVLQYVQPGLAGLMDGSVSTLAPLFAAAFATH NWQTFLVGLAASI Sbjct: 154 PDVRAEEDRTNRRMFVLQYVQPGLAGLMDGSVSTLAPLFAAAFATHQNWQTFLVGLAASI 213 Query: 192 GAGISMGFAEALSDDGSLTGRGSPWLRGLTCGLMTTLGGLGHTIPYLVPDAWPNAFWIAT 251 GAGISMGFAEALSDDGSLTGRGSPWLRGLTCGLMTTLGGLGHT PYLVPD+W NAFWIAT Sbjct: 214 GAGISMGFAEALSDDGSLTGRGSPWLRGLTCGLMTTLGGLGHTAPYLVPDSWANAFWIAT 273 Query: 252 AIAGIVVFFELWAIAFIRARYMDTPFLQAVFQIVLGGAIVLAVGILIGAA 301 AIAG+VVFFELWAIAFIR+RYMDTPFLQAVFQIVLGGAIVLAVGILIGAA Sbjct: 274 AIAGVVVFFELWAIAFIRSRYMDTPFLQAVFQIVLGGAIVLAVGILIGAA 323 >ref|YP_001242916.1| hypothetical protein BBta_7128 [Bradyrhizobium sp. BTAi1] gb|ABQ39010.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 323 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/230 (87%), Positives = 213/230 (92%) Query: 72 LPLDTIRKEVETMELEAERFYSKAAEKAEDVGVRRLLGDLAEEEKGHEKLAVKLTGEILK 131 L LD IRKEV TME EAERFY+KAAE+A+DVGVRRLLGDLAE EKGHEK+A KLT +IL Sbjct: 94 LSLDAIRKEVGTMEFEAERFYAKAAEQAKDVGVRRLLGDLAEAEKGHEKVAAKLTDKILS 153 Query: 132 PDVRAEEDRTRRRMFVLQYVQPGLAGLMDGSVSTLAPLFAAAFATHHNWQTFLVGLAASI 191 PDVR +ED TRRR+FVLQYVQPGLAGLMDGSVSTLAPLFAAAFATH N+QTFLVGLAASI Sbjct: 154 PDVRDKEDETRRRVFVLQYVQPGLAGLMDGSVSTLAPLFAAAFATHQNFQTFLVGLAASI 213 Query: 192 GAGISMGFAEALSDDGSLTGRGSPWLRGLTCGLMTTLGGLGHTIPYLVPDAWPNAFWIAT 251 GAGISMGFAEALSDDGSLTGRGSPWLRG CG MTTLGGLGHT+PYLVPD+WPNAFWIAT Sbjct: 214 GAGISMGFAEALSDDGSLTGRGSPWLRGAVCGAMTTLGGLGHTMPYLVPDSWPNAFWIAT 273 Query: 252 AIAGIVVFFELWAIAFIRARYMDTPFLQAVFQIVLGGAIVLAVGILIGAA 301 AIA +VVFFELWAIA+IRARYMDTPFLQAVFQIVLGG IVL VGILIGAA Sbjct: 274 AIASLVVFFELWAIAYIRARYMDTPFLQAVFQIVLGGIIVLGVGILIGAA 323 >ref|ZP_07025759.1| Rubrerythrin [Afipia sp. 1NLS2] gb|EFI52901.1| Rubrerythrin [Afipia sp. 1NLS2] Length = 322 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 214/304 (70%), Positives = 240/304 (78%), Gaps = 19/304 (6%) Query: 1 MSNPPPSPPSLQKLRKEIDAIDEQVHRLLMARGDIIDRLIQVKKTQEVGSAFRPAREASM 60 MS P S +++ +E E+ HR L L+++ + Q+ G P R ++ Sbjct: 35 MSRYPDSARIFERMAEE-----EKNHRHL---------LLEMYE-QQFGPNLPPIRRNNV 79 Query: 61 MRELVRRHRGI---LPLDTIRKEVETMELEAERFYSKAAEKAEDVGVRRLLGDLAEEEKG 117 L RR + L LDTIRKE ETME EAERFY+KAAE+ D+GVR+LLGDLAE EKG Sbjct: 80 RGFLRRRPIWLTKNLSLDTIRKEAETMEFEAERFYTKAAEQTRDIGVRKLLGDLAEIEKG 139 Query: 118 HEKLAVKLTGEILKPDVRAEEDRTRRRMFVLQYVQPGLAGLMDGSVSTLAPLFAAAFATH 177 HE A +LTG L PD R EED+TR+RMFVLQYVQPGLAGLMDGSVSTLAPLFAAAFATH Sbjct: 140 HESFAARLTGN-LSPDAREEEDKTRKRMFVLQYVQPGLAGLMDGSVSTLAPLFAAAFATH 198 Query: 178 HNWQTFLVGLAASIGAGISMGFAEALSDDGSLTGRGSPWLRGLTCGLMTTLGGLGHTIPY 237 +NWQTFLVGLAASIGAGISMGFAEALSDDGS+TGRGSPWLRG CGLMTTLGGLGHT+PY Sbjct: 199 NNWQTFLVGLAASIGAGISMGFAEALSDDGSMTGRGSPWLRGAICGLMTTLGGLGHTLPY 258 Query: 238 LVPDAWPNAFWIATAIAGIVVFFELWAIAFIRARYMDTPFLQAVFQIVLGGAIVLAVGIL 297 LVPD+W NAFWIAT IAG+VVF ELWAIA+IR RYMDTPFLQAVFQIVLGGAIVLAVGIL Sbjct: 259 LVPDSWLNAFWIATTIAGVVVFLELWAIAYIRTRYMDTPFLQAVFQIVLGGAIVLAVGIL 318 Query: 298 IGAA 301 IGAA Sbjct: 319 IGAA 322 >ref|YP_001203079.1| hypothetical protein BRADO0924 [Bradyrhizobium sp. ORS 278] emb|CAL74842.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 323 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/230 (86%), Positives = 212/230 (92%) Query: 72 LPLDTIRKEVETMELEAERFYSKAAEKAEDVGVRRLLGDLAEEEKGHEKLAVKLTGEILK 131 L LD IRKEV TME EAERFY+KAAE+A+DVGVRRLLGDLA EKGHE++A KLT EIL Sbjct: 94 LSLDAIRKEVGTMEFEAERFYAKAAEQAKDVGVRRLLGDLALAEKGHEQVAAKLTDEILS 153 Query: 132 PDVRAEEDRTRRRMFVLQYVQPGLAGLMDGSVSTLAPLFAAAFATHHNWQTFLVGLAASI 191 PDVR +ED TRRR+FVLQYVQPGLAGLMDGSVSTLAPLFAAAFATH N+QTFLVGLAASI Sbjct: 154 PDVRHKEDETRRRVFVLQYVQPGLAGLMDGSVSTLAPLFAAAFATHQNFQTFLVGLAASI 213 Query: 192 GAGISMGFAEALSDDGSLTGRGSPWLRGLTCGLMTTLGGLGHTIPYLVPDAWPNAFWIAT 251 GAGISMGFAEALSDDGSLTGRGSPWLRG CG MTTLGGLGHT+PYLVPD+W NAFWIAT Sbjct: 214 GAGISMGFAEALSDDGSLTGRGSPWLRGAVCGAMTTLGGLGHTMPYLVPDSWTNAFWIAT 273 Query: 252 AIAGIVVFFELWAIAFIRARYMDTPFLQAVFQIVLGGAIVLAVGILIGAA 301 AIAG+VVFFELWAIA+IRARYMDTPFLQAVFQIVLGG IVL VGILIGAA Sbjct: 274 AIAGLVVFFELWAIAYIRARYMDTPFLQAVFQIVLGGIIVLGVGILIGAA 323 >ref|YP_533947.1| rubrerythrin [Rhodopseudomonas palustris BisB18] gb|ABD89628.1| Rubrerythrin [Rhodopseudomonas palustris BisB18] Length = 323 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 198/230 (86%), Positives = 209/230 (90%) Query: 72 LPLDTIRKEVETMELEAERFYSKAAEKAEDVGVRRLLGDLAEEEKGHEKLAVKLTGEILK 131 L LDTIRKE ETME EAERFY+KAAE+ D GVRRLL DLAE EKGHE+LAVKL+ IL Sbjct: 94 LSLDTIRKEAETMEFEAERFYAKAAEQTTDTGVRRLLSDLAEIEKGHEQLAVKLSETILT 153 Query: 132 PDVRAEEDRTRRRMFVLQYVQPGLAGLMDGSVSTLAPLFAAAFATHHNWQTFLVGLAASI 191 VR EEDRTRRRMFVLQYVQPGLAGLMDGSVSTLAPLFAAAFATH NWQTFLVGLAASI Sbjct: 154 AGVRGEEDRTRRRMFVLQYVQPGLAGLMDGSVSTLAPLFAAAFATHQNWQTFLVGLAASI 213 Query: 192 GAGISMGFAEALSDDGSLTGRGSPWLRGLTCGLMTTLGGLGHTIPYLVPDAWPNAFWIAT 251 GAGISMGFAEALSDDGS+TGRGSPWLRG CGLMTT+GGLGHT+PYLVPD+W NAFWIAT Sbjct: 214 GAGISMGFAEALSDDGSMTGRGSPWLRGGICGLMTTVGGLGHTLPYLVPDSWANAFWIAT 273 Query: 252 AIAGIVVFFELWAIAFIRARYMDTPFLQAVFQIVLGGAIVLAVGILIGAA 301 AIAG+VVF ELWAIA+IRA+YMDTPFLQAVFQIVLGG IVLAVGILIG A Sbjct: 274 AIAGVVVFIELWAIAYIRAKYMDTPFLQAVFQIVLGGVIVLAVGILIGGA 323