BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0012.p (221 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768042.1| hypothetical protein blr1402 [Bradyrhizobium ja... 221 6e-56 ref|YP_001237343.1| hypothetical protein BBta_1193 [Bradyrhizobi... 205 4e-51 ref|YP_571217.1| hypothetical protein RPD_4097 [Rhodopseudomonas... 192 3e-47 ref|YP_002287783.1| conserved hypothetical protein [Oligotropha ... 191 9e-47 ref|YP_001208281.1| hypothetical protein BRADO6452 [Bradyrhizobi... 188 4e-46 >ref|NP_768042.1| hypothetical protein blr1402 [Bradyrhizobium japonicum USDA 110] dbj|BAC46667.1| blr1402 [Bradyrhizobium japonicum USDA 110] Length = 261 Score = 221 bits (563), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 140/271 (51%), Positives = 163/271 (60%), Gaps = 61/271 (22%) Query: 1 MVQLLACRRSLRVLALALCSLTLAVISAAPASARPHHSRHAHSAHT-GHHARHYAH-RHY 58 M +L A R S R + ++PASARPH RH+ H HHA Y H RH Sbjct: 1 MFELFASRLS-RCVVALALFFAAVAAFSSPASARPH--RHSAERHAYAHHASRYHHYRHQ 57 Query: 59 GRTARLSRAERRALARPGGIVETNAAPLPGSADPVPNTGGV------------------- 99 R++R R+ A + GG ++T A S DP N+GG+ Sbjct: 58 ARSSRFERSA--AQLQAGGFMDTQA-----SYDPNANSGGMGDTRYLSGGDMAIGGNVSR 110 Query: 100 ----------------SAAGGFGSSG-------------IVAEARRYLGGNPTGRSSLWC 130 S+A GS+G +V+EARRYLGGNPTGR SLWC Sbjct: 111 AGKVSRARNMSHAVNNSSASDNGSAGNMGMSSGFGGGSGLVSEARRYLGGNPTGRGSLWC 170 Query: 131 ARFMNMVLQHTGHRGTGSDMASSFAKYGTRVSGPQVGAIAVMSRRG-GGHVGIITGVDAK 189 ARFMNMVL+ TGHRGTGSDMA+SFA+YGTRVSGPQVGAIAVMSR G GGHVGIITGVDA+ Sbjct: 171 ARFMNMVLEKTGHRGTGSDMANSFARYGTRVSGPQVGAIAVMSRGGRGGHVGIITGVDAQ 230 Query: 190 GNPIMISGNSGHRVRETPVSRGRIYAYVMPT 220 GNPIMISGN+G+RVRE PVSRGRIYAYVMP Sbjct: 231 GNPIMISGNNGNRVREAPVSRGRIYAYVMPN 261 >ref|YP_001237343.1| hypothetical protein BBta_1193 [Bradyrhizobium sp. BTAi1] gb|ABQ33437.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 217 Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 134/220 (60%), Positives = 163/220 (74%), Gaps = 14/220 (6%) Query: 7 CRRSLRVLALALCSLTLAVISAAPASARPHHS--RHAHSAHTGHHARHYAHRHYG-RTAR 63 RRSL ++AL + + +A +A PASARPHH HAH +H GHH YA RH+ R+AR Sbjct: 6 LRRSLHIVALTMGAAVIAA-TATPASARPHHGSGHHAHRSHGGHH---YAKRHFHHRSAR 61 Query: 64 LSRAER-RALARPGGIVETNAA-PLPGSADPVPNTGGVSAAGGFGSSGIVAEARRYLG-G 120 +SR ER A + + A+ +PG+A + G ++ G G S +VA AR Y+G G Sbjct: 62 MSRWERGVARMEVSSVADAQASLMMPGTA----SEGMATSGGFSGGSSVVAAARSYIGSG 117 Query: 121 NPTGRSSLWCARFMNMVLQHTGHRGTGSDMASSFAKYGTRVSGPQVGAIAVMSRRGGGHV 180 NPTGR SLWCARFMNMVL+ TGHRGTGSD+A SFA YG RVSGPQVGAIAVMSRRGGGHV Sbjct: 118 NPTGRRSLWCARFMNMVLERTGHRGTGSDLARSFASYGQRVSGPQVGAIAVMSRRGGGHV 177 Query: 181 GIITGVDAKGNPIMISGNSGHRVRETPVSRGRIYAYVMPT 220 G+++GVDA+GNPI+ISGN+GHRVRET VSRGR+YAYVMP Sbjct: 178 GVVSGVDAQGNPIVISGNNGHRVRETAVSRGRVYAYVMPN 217 >ref|YP_571217.1| hypothetical protein RPD_4097 [Rhodopseudomonas palustris BisB5] gb|ABE41316.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 264 Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 124/268 (46%), Positives = 157/268 (58%), Gaps = 51/268 (19%) Query: 1 MVQLLACRRSLRVLALALCSLTLAVISAAPASARPHHSRHAHSA-HTGHHARHYAHRHYG 59 MV+ A R RV A L T+A + A+PASARP H H H+A H G H H +HR Y Sbjct: 1 MVEFTAFRMG-RVFAWVLGVATVAAL-ASPASARPMHRHHGHTASHHGDH--HVSHRGYH 56 Query: 60 RTARLSRAERR--ALARPGGIVETNAA---PLPGSADPVPNTGGVSAAGGFGS------- 107 R R R +R + +PG + A P +++ + + AGG G+ Sbjct: 57 RHQRHQRYVKRQSSWNQPGFAADNGFAQPQPFGFTSNDQAQSYAPNDAGGIGAPRMIKQR 116 Query: 108 ---------------------------------SGIVAEARRYLGGNPTGRSSLWCARFM 134 S +VA AR Y+GGNPTGR LWCARFM Sbjct: 117 AQRRSARPAPEVQQAAEAQQAQWQTWNGGGGSGSNLVAAARSYIGGNPTGRGRLWCARFM 176 Query: 135 NMVLQHTGHRGTGSDMASSFAKYGTRVSGPQVGAIAVMSR-RGGGHVGIITGVDAKGNPI 193 NMVL+ +GHRGTGSDMASSFA+YG R+SGPQVGAIAVMSR + GGHVG++TG+DA+GNPI Sbjct: 177 NMVLERSGHRGTGSDMASSFARYGQRISGPQVGAIAVMSRGKRGGHVGVVTGIDARGNPI 236 Query: 194 MISGNSGHRVRETPVSRGRIYAYVMPTN 221 ++SGN G RV E+ S+GRIYAYVMP++ Sbjct: 237 VVSGNHGRRVAESVYSKGRIYAYVMPSS 264 >ref|YP_002287783.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] ref|YP_004634094.1| hypothetical protein OCA5_c31750 [Oligotropha carboxidovorans OM5] gb|ACI91918.1| putative conserved hypothetical protein [Oligotropha carboxidovorans OM5] gb|AEI04223.1| hypothetical protein OCA4_c31230 [Oligotropha carboxidovorans OM4] gb|AEI07853.1| hypothetical protein OCA5_c31750 [Oligotropha carboxidovorans OM5] Length = 214 Score = 191 bits (484), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 92/111 (82%), Positives = 100/111 (90%), Gaps = 1/111 (0%) Query: 110 IVAEARRYLGGNPTGRSSLWCARFMNMVLQHTGHRGTGSDMASSFAKYGTRVSGPQVGAI 169 +VAEARRY+GGNPTGRS LWCARFMNMVLQ TGH GTGSDMASSFAKYG R+SGPQVGAI Sbjct: 102 LVAEARRYIGGNPTGRSRLWCARFMNMVLQRTGHSGTGSDMASSFAKYGRRISGPQVGAI 161 Query: 170 AVMSR-RGGGHVGIITGVDAKGNPIMISGNSGHRVRETPVSRGRIYAYVMP 219 AVMSR R GGHVG+++G+DAKGNPI+ISGN G RV E P SRGRIYAYVMP Sbjct: 162 AVMSRGRRGGHVGVVSGIDAKGNPIIISGNHGRRVAEAPYSRGRIYAYVMP 212 >ref|YP_001208281.1| hypothetical protein BRADO6452 [Bradyrhizobium sp. ORS 278] emb|CAL80066.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 201 Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 129/203 (63%), Positives = 150/203 (73%), Gaps = 11/203 (5%) Query: 23 LAVISAAPASARPHHS--RHAHSAHTGHHARHYAHRHYGRTARLSRAER-RALARPGGIV 79 + V +A PASARPHH HAH +H GHH H H ARLSR ER A R G+ Sbjct: 5 VIVATATPASARPHHGSGHHAHRSHGGHHTAR-VHHHRRSVARLSRWERGVARMRVEGVA 63 Query: 80 ETNAA-PLPGSADPVPNTGGVSAAGGFGSSGIVAEARRYLGG-NPTGRSSLWCARFMNMV 137 + A+ +PG+ + G+ ++GGFG S +VA AR Y+GG NPTGR SLWCARFMNMV Sbjct: 64 DAQASLMMPGTV-----SDGMVSSGGFGGSSVVATARSYVGGGNPTGRRSLWCARFMNMV 118 Query: 138 LQHTGHRGTGSDMASSFAKYGTRVSGPQVGAIAVMSRRGGGHVGIITGVDAKGNPIMISG 197 L+ TGHRGTGSDMA SFA YG RVSGPQVGAIAVMSRRGGGHVG+++GVDA+GNPI+ISG Sbjct: 119 LERTGHRGTGSDMARSFASYGQRVSGPQVGAIAVMSRRGGGHVGVVSGVDAQGNPIVISG 178 Query: 198 NSGHRVRETPVSRGRIYAYVMPT 220 N GHRVRE VSRGR+YAYVMP Sbjct: 179 NYGHRVREAAVSRGRVYAYVMPN 201