BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0007.p (537 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768044.1| ATP-dependent protease ATP-binding subunit [Bra... 852 0.0 ref|YP_001208279.1| chaperone [Bradyrhizobium sp. ORS 278] >gi|1... 830 0.0 ref|YP_001237345.1| chaperone [Bradyrhizobium sp. BTAi1] >gi|146... 830 0.0 ref|YP_534120.1| ATPase [Rhodopseudomonas palustris BisB18] >gi|... 827 0.0 ref|YP_487846.1| AAA_5 ATPase [Rhodopseudomonas palustris HaA2] ... 826 0.0 >ref|NP_768044.1| ATP-dependent protease ATP-binding subunit [Bradyrhizobium japonicum USDA 110] sp|Q89UL2.1|CLPB_BRAJA RecName: Full=Chaperone protein ClpB dbj|BAC46669.1| ATP-dependent protease ATP-binding subunit [Bradyrhizobium japonicum USDA 110] Length = 879 Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/590 (76%), Positives = 489/590 (82%), Gaps = 67/590 (11%) Query: 1 MRDGHQQFSPLHLLKVLLDDNEGLAGGLIDRAGGNSRAILKATEEALNKLPKVSGNGAGQ 60 +R+GHQQFS LH+LKVLLDDNEGLA GLIDRAGGNSRAILKATE+ALNK+PKVSG GAGQ Sbjct: 22 VREGHQQFSTLHVLKVLLDDNEGLAAGLIDRAGGNSRAILKATEDALNKVPKVSGGGAGQ 81 Query: 61 VYLSPELARAFDAAEKAADKAGDSFVTVERLLLGLTLEKGSEAASILSKGGV-------- 112 +YL+PELAR FDAAEKA +KAGDSFVTVERLLLGLTLEK SEA +ILSKGGV Sbjct: 82 IYLAPELARTFDAAEKAGEKAGDSFVTVERLLLGLTLEKTSEAGTILSKGGVTPQNLNAA 141 Query: 113 -------------TAQNLNAAI--------EALRKGR----------------------- 128 TA+N A+ +A R G+ Sbjct: 142 IEALRKGRTADSATAENAYDALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTK 201 Query: 129 ----------TADSATAEN-AYDALXGDVPESLKDKKLLSLDMGALIAGAKYRGEFEERL 177 +A AE A + GDVPESLKDKKLLSLD+GALIAGAKYRGEFEERL Sbjct: 202 NNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKKLLSLDLGALIAGAKYRGEFEERL 261 Query: 178 KSVLQEVSTAEGGIILFIDEMHTLIGAGKADGAMDASNLLKPALARGELHCIGATTLDEY 237 K+VLQEV+ +EG ILFIDEMHTLIGAGK DGAMDASNLLKPALARGELHCIGATTLDEY Sbjct: 262 KAVLQEVTGSEGTFILFIDEMHTLIGAGKGDGAMDASNLLKPALARGELHCIGATTLDEY 321 Query: 238 RKHVEKDAALARRFQPIYVSEPTVEDTISILRGLKDKYEQHHGVRITDSALVAATTLSNR 297 +KHVEKDAALARRFQPI+VSEP+VEDTISILRGLKDKYEQHHGVRITDSALVA+ TLSNR Sbjct: 322 QKHVEKDAALARRFQPIFVSEPSVEDTISILRGLKDKYEQHHGVRITDSALVASATLSNR 381 Query: 298 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSLDRDIIRLKIEQEALKKENDAGSKS 357 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDS+DR+IIRLKIEQEALKKE+DAGSKS Sbjct: 382 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSMDREIIRLKIEQEALKKESDAGSKS 441 Query: 358 RLQTLEKELAGLEERSTALTARWSAEKNKLSNAQKLKSELDALRVELANAQRKGEFQKAG 417 RLQTLEKEL LEE+S +LTARWSAEKNKLS+AQKLK+ELD LRVELANAQR+GEFQKAG Sbjct: 442 RLQTLEKELVELEEKSASLTARWSAEKNKLSDAQKLKAELDGLRVELANAQRRGEFQKAG 501 Query: 418 ELAYGRIPELERKLADIEAQENSKPNGGEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEK 477 ELAYGRIPELER+LADIEA+ENS GEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEK Sbjct: 502 ELAYGRIPELERQLADIEAKENS----GEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEK 557 Query: 478 DKLLKMEDSLARRVVGQAEAVRAVATAVRRARAGLQDPNRPTGSFMFLLP 527 DKLLKMEDSL +RVVGQAEAV AVATAVRR+RAGLQDPNRP GSFMFL P Sbjct: 558 DKLLKMEDSLGKRVVGQAEAVHAVATAVRRSRAGLQDPNRPMGSFMFLGP 607 >ref|YP_001208279.1| chaperone [Bradyrhizobium sp. ORS 278] emb|CAL80064.1| Chaperone [Bradyrhizobium sp. ORS 278] Length = 879 Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/590 (75%), Positives = 485/590 (82%), Gaps = 67/590 (11%) Query: 1 MRDGHQQFSPLHLLKVLLDDNEGLAGGLIDRAGGNSRAILKATEEALNKLPKVSGNGAGQ 60 +RDGHQQFSPLHLLKVLLDD+EGLAGGLIDRAGGNSRAILKATE+AL K+PKVSG+GAGQ Sbjct: 22 VRDGHQQFSPLHLLKVLLDDSEGLAGGLIDRAGGNSRAILKATEDALGKMPKVSGSGAGQ 81 Query: 61 VYLSPELARAFDAAEKAADKAGDSFVTVERLLLGLT----------LEKGSEAASILS-- 108 +YLSPELARAFDAAEKAA+KAGDSFVTVERLLLGLT L KG A L+ Sbjct: 82 IYLSPELARAFDAAEKAAEKAGDSFVTVERLLLGLTLDAKSETGSILAKGGVTAQNLNAA 141 Query: 109 ----KGGVTAQNLNA--AIEALRK------------------GR---------------- 128 + G TA + A A +AL+K GR Sbjct: 142 IESLRKGRTADSATAENAYDALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTK 201 Query: 129 ----------TADSATAEN-AYDALXGDVPESLKDKKLLSLDMGALIAGAKYRGEFEERL 177 +A E A + GDVPESLKDK+LLSLD+GALIAGAKYRGEFEERL Sbjct: 202 NNPVLIGEPGVGKTAIVEGLALRIVNGDVPESLKDKRLLSLDLGALIAGAKYRGEFEERL 261 Query: 178 KSVLQEVSTAEGGIILFIDEMHTLIGAGKADGAMDASNLLKPALARGELHCIGATTLDEY 237 K+VLQEV+ AEG +LFIDEMHTLIGAGKADGAMDASNLLKPALARGELHCIGATTLDEY Sbjct: 262 KAVLQEVTAAEGTFVLFIDEMHTLIGAGKADGAMDASNLLKPALARGELHCIGATTLDEY 321 Query: 238 RKHVEKDAALARRFQPIYVSEPTVEDTISILRGLKDKYEQHHGVRITDSALVAATTLSNR 297 +KHVEKDAALARRFQP+YV+EPTVEDTISILRGLKDKYEQHHGVRITDSALVA+ TLSNR Sbjct: 322 QKHVEKDAALARRFQPVYVTEPTVEDTISILRGLKDKYEQHHGVRITDSALVASATLSNR 381 Query: 298 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSLDRDIIRLKIEQEALKKENDAGSKS 357 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSLDR+IIRLKIEQEALKKE+D GSK+ Sbjct: 382 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSLDREIIRLKIEQEALKKESDLGSKT 441 Query: 358 RLQTLEKELAGLEERSTALTARWSAEKNKLSNAQKLKSELDALRVELANAQRKGEFQKAG 417 RLQ LEKELA LEE+S +LTA+WSAEK+KLSNAQKLKSELD LR+ELANAQR+GE+QKAG Sbjct: 442 RLQALEKELADLEEKSASLTAKWSAEKDKLSNAQKLKSELDGLRIELANAQRRGEYQKAG 501 Query: 418 ELAYGRIPELERKLADIEAQENSKPNGGEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEK 477 ELAYGRIPELE++LADIEA+E S GEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEK Sbjct: 502 ELAYGRIPELEKRLADIEAKETS----GEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEK 557 Query: 478 DKLLKMEDSLARRVVGQAEAVRAVATAVRRARAGLQDPNRPTGSFMFLLP 527 DKLL+MEDSL +RVVGQ EAV AVATAVRR+RAGLQDPNRP GSFMFL P Sbjct: 558 DKLLRMEDSLGKRVVGQFEAVHAVATAVRRSRAGLQDPNRPMGSFMFLGP 607 >ref|YP_001237345.1| chaperone [Bradyrhizobium sp. BTAi1] gb|ABQ33439.1| Chaperone [Bradyrhizobium sp. BTAi1] Length = 879 Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/590 (75%), Positives = 486/590 (82%), Gaps = 67/590 (11%) Query: 1 MRDGHQQFSPLHLLKVLLDDNEGLAGGLIDRAGGNSRAILKATEEALNKLPKVSGNGAGQ 60 +RDGHQQFSPLHLLKVLLDD+EGLAGGLIDRAGGNSRAILKATE+AL KLPKVSG+GAGQ Sbjct: 22 VRDGHQQFSPLHLLKVLLDDSEGLAGGLIDRAGGNSRAILKATEDALGKLPKVSGSGAGQ 81 Query: 61 VYLSPELARAFDAAEKAADKAGDSFVTVERLLLGLT----------LEKGSEAASILS-- 108 +YLSPELAR FDAAEKAA+KAGDSFVTVERLLLGLT L KG A L+ Sbjct: 82 IYLSPELARGFDAAEKAAEKAGDSFVTVERLLLGLTLDKNSETGSILAKGGVTAQNLNAA 141 Query: 109 ----KGGVTAQNLNA--AIEALRK------------------GR---------------- 128 + G TA + A A +AL+K GR Sbjct: 142 IESLRKGRTADSATAENAYDALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTK 201 Query: 129 ----------TADSATAEN-AYDALXGDVPESLKDKKLLSLDMGALIAGAKYRGEFEERL 177 +A E A + GDVPESLKDK+LLSLD+GALIAGAKYRGEFEERL Sbjct: 202 NNPVLIGEPGVGKTAIVEGLALRIVNGDVPESLKDKRLLSLDLGALIAGAKYRGEFEERL 261 Query: 178 KSVLQEVSTAEGGIILFIDEMHTLIGAGKADGAMDASNLLKPALARGELHCIGATTLDEY 237 K+VLQEV+ AEG +LFIDEMHTLIGAGKADGAMDASNLLKPALARGELHCIGATTLDEY Sbjct: 262 KAVLQEVTAAEGTFVLFIDEMHTLIGAGKADGAMDASNLLKPALARGELHCIGATTLDEY 321 Query: 238 RKHVEKDAALARRFQPIYVSEPTVEDTISILRGLKDKYEQHHGVRITDSALVAATTLSNR 297 +KHVEKDAALARRFQP+YV+EPTVEDTISILRGLKDKYEQHHGVRITDSALVA+ TLSNR Sbjct: 322 QKHVEKDAALARRFQPVYVTEPTVEDTISILRGLKDKYEQHHGVRITDSALVASATLSNR 381 Query: 298 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSLDRDIIRLKIEQEALKKENDAGSKS 357 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSLDR+IIRLKIEQEALKKE+D GSK+ Sbjct: 382 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSLDREIIRLKIEQEALKKESDLGSKT 441 Query: 358 RLQTLEKELAGLEERSTALTARWSAEKNKLSNAQKLKSELDALRVELANAQRKGEFQKAG 417 RLQ LEKELA LEE+S +LTA+WSAEK+KLSNAQKLKSELDALR+ELANAQR+GE+QKAG Sbjct: 442 RLQALEKELADLEEKSASLTAKWSAEKDKLSNAQKLKSELDALRIELANAQRRGEYQKAG 501 Query: 418 ELAYGRIPELERKLADIEAQENSKPNGGEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEK 477 ELAYGRIPELE++LADIEA+EN+ GEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEK Sbjct: 502 ELAYGRIPELEKRLADIEAKENA----GEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEK 557 Query: 478 DKLLKMEDSLARRVVGQAEAVRAVATAVRRARAGLQDPNRPTGSFMFLLP 527 DKLL+MEDSL +RVVGQ EAV AVATAVRR+RAGLQDP+RP GSFMFL P Sbjct: 558 DKLLRMEDSLGKRVVGQFEAVHAVATAVRRSRAGLQDPHRPMGSFMFLGP 607 >ref|YP_534120.1| ATPase [Rhodopseudomonas palustris BisB18] gb|ABD89801.1| ATPase AAA-2 [Rhodopseudomonas palustris BisB18] Length = 879 Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/590 (74%), Positives = 480/590 (81%), Gaps = 67/590 (11%) Query: 1 MRDGHQQFSPLHLLKVLLDDNEGLAGGLIDRAGGNSRAILKATEEALNKLPKVSGNGAGQ 60 +R+GHQQFSPLH+LKVLLDD+EGLAGGLIDR+GGNSRAILKATE+ALNK+PKVSG GAGQ Sbjct: 22 VREGHQQFSPLHILKVLLDDSEGLAGGLIDRSGGNSRAILKATEDALNKMPKVSGAGAGQ 81 Query: 61 VYLSPELARAFDAAEKAADKAGDSFVTVERL--------------LL---GLTLEKGSEA 103 VYL+P+ ARAFDAAE+AADKAGDSFVTVERL LL G+T + + A Sbjct: 82 VYLAPDTARAFDAAEQAADKAGDSFVTVERLLLALALDRDSEAGALLKKGGVTPQNLNAA 141 Query: 104 ASILSKG----GVTAQNLNAAI--------EALRKGR----------------------- 128 + L KG TA+N A+ +A R G+ Sbjct: 142 INALRKGRTADSATAENAYDALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTK 201 Query: 129 ----------TADSATAEN-AYDALXGDVPESLKDKKLLSLDMGALIAGAKYRGEFEERL 177 +A E A L GDVPESLKDKKLLSLD+GALIAGAKYRGEFEERL Sbjct: 202 NNPVLIGEPGVGKTAIVEGLALRILNGDVPESLKDKKLLSLDLGALIAGAKYRGEFEERL 261 Query: 178 KSVLQEVSTAEGGIILFIDEMHTLIGAGKADGAMDASNLLKPALARGELHCIGATTLDEY 237 K+VL EV++AEGGIILFIDEMHTLIGAGKADGAMDASNLLKPALARGELHCIGATTLDEY Sbjct: 262 KAVLSEVTSAEGGIILFIDEMHTLIGAGKADGAMDASNLLKPALARGELHCIGATTLDEY 321 Query: 238 RKHVEKDAALARRFQPIYVSEPTVEDTISILRGLKDKYEQHHGVRITDSALVAATTLSNR 297 RKHVEKDAALARRFQPI+VSEPTVEDTISILRGLKDKYEQHHGVRI DSALVAATTLSNR Sbjct: 322 RKHVEKDAALARRFQPIFVSEPTVEDTISILRGLKDKYEQHHGVRIADSALVAATTLSNR 381 Query: 298 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSLDRDIIRLKIEQEALKKENDAGSKS 357 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDS+DR+IIRLKIEQEALKKE D GSKS Sbjct: 382 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSMDREIIRLKIEQEALKKETDPGSKS 441 Query: 358 RLQTLEKELAGLEERSTALTARWSAEKNKLSNAQKLKSELDALRVELANAQRKGEFQKAG 417 RLQTL ELA LEE+S ALTARWSAEKNKLSNAQKLKSELD LR+ELA+AQR+GE+Q+AG Sbjct: 442 RLQTLSGELAELEEKSAALTARWSAEKNKLSNAQKLKSELDGLRIELADAQRRGEYQRAG 501 Query: 418 ELAYGRIPELERKLADIEAQENSKPNGGEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEK 477 ELAYGRIPELER+LA+IEA + GEMMEEAVTANHIAQVVSRWTGVPV+KMLEGEK Sbjct: 502 ELAYGRIPELERRLAEIEAHAGN----GEMMEEAVTANHIAQVVSRWTGVPVEKMLEGEK 557 Query: 478 DKLLKMEDSLARRVVGQAEAVRAVATAVRRARAGLQDPNRPTGSFMFLLP 527 DKLL+MEDSL +RVVGQ EAV AVATAVRR+RAGLQDPNRP GSFMFL P Sbjct: 558 DKLLRMEDSLGKRVVGQFEAVHAVATAVRRSRAGLQDPNRPMGSFMFLGP 607 >ref|YP_487846.1| AAA_5 ATPase [Rhodopseudomonas palustris HaA2] gb|ABD08935.1| AAA_5 ATPase [Rhodopseudomonas palustris HaA2] Length = 879 Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/590 (73%), Positives = 480/590 (81%), Gaps = 67/590 (11%) Query: 1 MRDGHQQFSPLHLLKVLLDDNEGLAGGLIDRAGGNSRAILKATEEALNKLPKVSGNGAGQ 60 +R+GHQQFSPLH+LKVLLDD+EGLAGGLIDR+GGNSRAILKATE+AL K+PKVSG+GAGQ Sbjct: 22 VREGHQQFSPLHILKVLLDDSEGLAGGLIDRSGGNSRAILKATEDALGKMPKVSGSGAGQ 81 Query: 61 VYLSPELARAFDAAEKAADKAGDSFVTVERLLLGLTLEKGSE-----------------A 103 VYL+P ARA D AE+AA+KAGDSFVTVERLLL L+L+K SE A Sbjct: 82 VYLAPATARALDGAEQAAEKAGDSFVTVERLLLALSLDKDSEAGQLLAKGGVTPQNLNAA 141 Query: 104 ASILSKG----GVTAQNLNAAI--------EALRKGR----------------------- 128 + L KG TA+N A+ +A R G+ Sbjct: 142 INALRKGRTADSATAENAYDALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTK 201 Query: 129 ----------TADSATAEN-AYDALXGDVPESLKDKKLLSLDMGALIAGAKYRGEFEERL 177 +A E A L GDVPESLKDKKLL+LDMGALIAGAKYRGEFEERL Sbjct: 202 NNPVLIGEPGVGKTAIVEGLALRILNGDVPESLKDKKLLALDMGALIAGAKYRGEFEERL 261 Query: 178 KSVLQEVSTAEGGIILFIDEMHTLIGAGKADGAMDASNLLKPALARGELHCIGATTLDEY 237 K+VL EV+ A GGI+LFIDEMHTL+GAGKADGAMDASNLLKPALARGELHCIGATTLDEY Sbjct: 262 KAVLNEVTAAAGGIVLFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCIGATTLDEY 321 Query: 238 RKHVEKDAALARRFQPIYVSEPTVEDTISILRGLKDKYEQHHGVRITDSALVAATTLSNR 297 RKHVEKDAALARRFQP++VSEPTVEDTISILRGLKDKYEQHHGVRI DSALVAATTLSNR Sbjct: 322 RKHVEKDAALARRFQPVFVSEPTVEDTISILRGLKDKYEQHHGVRIADSALVAATTLSNR 381 Query: 298 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSLDRDIIRLKIEQEALKKENDAGSKS 357 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDS+DR+I+RLKIEQEALKKE+DAGSKS Sbjct: 382 YITDRFLPDKAIDLMDEAAARLKMQVDSKPEELDSMDREIVRLKIEQEALKKESDAGSKS 441 Query: 358 RLQTLEKELAGLEERSTALTARWSAEKNKLSNAQKLKSELDALRVELANAQRKGEFQKAG 417 RL TLEKELA LEE+S ALT RWSAEKNKLS+AQKLKSELD LR+ELA+AQR+GE+Q+AG Sbjct: 442 RLVTLEKELADLEEKSAALTQRWSAEKNKLSDAQKLKSELDGLRLELADAQRRGEYQRAG 501 Query: 418 ELAYGRIPELERKLADIEAQENSKPNGGEMMEEAVTANHIAQVVSRWTGVPVDKMLEGEK 477 ELAYGRIPELE++LADIEA EN+ GEMMEEAVTA+HIAQVVSRWTGVPVDKMLEGEK Sbjct: 502 ELAYGRIPELEKRLADIEANENA----GEMMEEAVTADHIAQVVSRWTGVPVDKMLEGEK 557 Query: 478 DKLLKMEDSLARRVVGQAEAVRAVATAVRRARAGLQDPNRPTGSFMFLLP 527 +KLL+ME+ + +RVVGQ EAV AV+TAVRRARAGLQDPNRP GSFMFL P Sbjct: 558 EKLLRMEEQIGKRVVGQFEAVHAVSTAVRRARAGLQDPNRPMGSFMFLGP 607