BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0001.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768048.1| hypothetical protein blr1408 [Bradyrhizobium ja... 222 3e-56 ref|YP_576009.1| hypothetical protein Nham_0661 [Nitrobacter ham... 208 4e-52 ref|ZP_01044578.1| hypothetical protein NB311A_03589 [Nitrobacte... 202 3e-50 ref|YP_001208272.1| hypothetical protein BRADO6434 [Bradyrhizobi... 198 5e-49 ref|YP_001237347.1| hypothetical protein BBta_1200 [Bradyrhizobi... 197 1e-48 >ref|NP_768048.1| hypothetical protein blr1408 [Bradyrhizobium japonicum USDA 110] dbj|BAC46673.1| blr1408 [Bradyrhizobium japonicum USDA 110] Length = 196 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 129/206 (62%), Positives = 152/206 (73%), Gaps = 14/206 (6%) Query: 1 MREIVRPVTAALSVACLAIAMSAASNSGAFAQAKQQQMAPPAKQPAQAAPPAQAAAPAQD 60 M ++RP AL VACL A S AS+ AFAQAKQQ P PAQA Sbjct: 1 MPALLRPALTALGVACLLSAASLASSGTAFAQAKQQTAPAPQAAPAQAPS---------- 50 Query: 61 QAPPIKQIALTDKQVDGALAAAKEMDPITAKLSQDAKPDPKIVAQLEGIAKKNGFASYDE 120 +KQ+ALTDKQ+DG LAA K+MD IT KL ++ PD K++AQL+G+AKKNGFA YD+ Sbjct: 51 ----LKQVALTDKQLDGVLAAQKDMDAITEKLPENTAPDQKVIAQLDGVAKKNGFAGYDD 106 Query: 121 YNNVVDNISLVLGGFDPQTKKYIGPEAVLKAQIAQVQADKKMSAKDKKDALADLNDALKS 180 YNNVVDNISLVLGGFDP TKKY+G EAV+KAQIAQ+QADKKM AKDKK+AL +LN+ALK+ Sbjct: 107 YNNVVDNISLVLGGFDPATKKYVGTEAVIKAQIAQIQADKKMPAKDKKEALDELNEALKT 166 Query: 181 PPPAVENKGNIDLVTKSYDKLMEEFG 206 P PA+ENKGNIDLV K YDKL+ G Sbjct: 167 PAPAIENKGNIDLVGKYYDKLVAALG 192 >ref|YP_576009.1| hypothetical protein Nham_0661 [Nitrobacter hamburgensis X14] gb|ABE61549.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 198 Score = 208 bits (530), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 116/212 (54%), Positives = 143/212 (67%), Gaps = 17/212 (8%) Query: 1 MREIVRPVTAALSVACLAIAMSAASNSGAFAQAKQQQMAPPAKQPAQAAPPAQAAAPAQD 60 MR++VR A++VA L ++ +A S AFAQAK P A+A PA A Sbjct: 1 MRDVVRSAVIAIAVAGLTLSAAALSGGSAFAQAK------PVSAAAEAVSPADA------ 48 Query: 61 QAPPIKQIALTDKQVDGALAAAKEMDPITAKL--SQDAKPDPKIVAQLEGIAKKNGFASY 118 P+KQIALT+KQ++G LAA K MD + KL S + KPD ++ +LE I+KK+GFASY Sbjct: 49 ---PVKQIALTEKQIEGVLAAQKHMDALDDKLPDSPNVKPDSRVATELEAISKKSGFASY 105 Query: 119 DEYNNVVDNISLVLGGFDPQTKKYIGPEAVLKAQIAQVQADKKMSAKDKKDALADLNDAL 178 EYN V+DNISLVL GFDP TKKYIG EAVLK QIA VQAD KM K+KK AL D+N AL Sbjct: 106 AEYNTVMDNISLVLSGFDPATKKYIGAEAVLKQQIAAVQADTKMPGKEKKQALDDMNAAL 165 Query: 179 KSPPPAVENKGNIDLVTKSYDKLMEEFGGSDD 210 ++P PA+ENKGNIDLV K YDKL+ +D Sbjct: 166 QAPAPAIENKGNIDLVAKYYDKLVGALSEGED 197 >ref|ZP_01044578.1| hypothetical protein NB311A_03589 [Nitrobacter sp. Nb-311A] gb|EAQ37359.1| hypothetical protein NB311A_03589 [Nitrobacter sp. Nb-311A] Length = 198 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 116/213 (54%), Positives = 146/213 (68%), Gaps = 17/213 (7%) Query: 1 MREIVRPVTAALSVACLAIAMSAASNSGAFAQAKQQQMAPPAKQPAQAAPPAQAAAPAQD 60 MR++VR A++VA L ++ +A AFAQAK+ A PA+A PPA A Sbjct: 1 MRDLVRSTVFAIAVAGLTLSAAALPTGNAFAQAKR------APVPAEATPPADA------ 48 Query: 61 QAPPIKQIALTDKQVDGALAAAKEMDPITAKL--SQDAKPDPKIVAQLEGIAKKNGFASY 118 P+KQ+ALT+KQ+ G LAA K+M + K S + + D K+VA+LE +AKK GFASY Sbjct: 49 ---PMKQVALTEKQIQGVLAAQKDMAALDDKGADSPNMESDGKVVAELESVAKKAGFASY 105 Query: 119 DEYNNVVDNISLVLGGFDPQTKKYIGPEAVLKAQIAQVQADKKMSAKDKKDALADLNDAL 178 EY+NV+DNISLVL GFDP TKKYIG EAVLK QIA V+AD KM AK+KK AL D+N AL Sbjct: 106 AEYDNVIDNISLVLAGFDPATKKYIGAEAVLKRQIAAVKADTKMPAKEKKQALDDMNAAL 165 Query: 179 KSPPPAVENKGNIDLVTKSYDKLMEEFGGSDDN 211 K+P P +ENKGNIDLV K YDKL+ S+D+ Sbjct: 166 KTPSPVIENKGNIDLVGKYYDKLVGALSESEDD 198 >ref|YP_001208272.1| hypothetical protein BRADO6434 [Bradyrhizobium sp. ORS 278] emb|CAL80057.1| conserved hypothetical protein; putative exported protein [Bradyrhizobium sp. ORS 278] Length = 197 Score = 198 bits (503), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 120/211 (56%), Positives = 141/211 (66%), Gaps = 14/211 (6%) Query: 1 MREIVRPVTAALSVACLAIAMSAASNSGAFAQAKQQQMAPPAKQPAQAAPPAQAAAPAQD 60 MR VR AL++A AM+A + A AQA + PAQ P Sbjct: 1 MRMFVRTTFVALAIAGSGAAMTALATLPALAQAAKDS-------------PAQPPGPTIS 47 Query: 61 QAPPIKQIALTDKQVDGALAAAKEMDPITAKLSQDAKPDPKIVAQLEGIAKKNGFASYDE 120 Q P +KQIALTDKQ++ LA+ K+MD IT KL +A PD K+V QL+G+AKK GFASYD+ Sbjct: 48 QPPQLKQIALTDKQIENVLASQKDMDAITDKLPDNAPPDQKVVTQLDGVAKKYGFASYDD 107 Query: 121 YNNVVDNISLVLGGFDPQTKKYIGPEAVLKAQIAQVQADKKMSAKDKKDALADLNDALKS 180 +N VVDNISLV+GG DP+TKKY+GPEAV+K QI QVQADKKM DKK L DLN ALK+ Sbjct: 108 FNVVVDNISLVMGGIDPKTKKYVGPEAVIKDQIEQVQADKKMKPDDKKQVLNDLNAALKA 167 Query: 181 PPPAVENKGNIDLVTKSYDKLMEEFGGSDDN 211 PP VENKGNIDLV K YDKL F G DDN Sbjct: 168 KPPEVENKGNIDLVVKYYDKLAAAF-GEDDN 197 >ref|YP_001237347.1| hypothetical protein BBta_1200 [Bradyrhizobium sp. BTAi1] gb|ABQ33441.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 197 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 119/211 (56%), Positives = 141/211 (66%), Gaps = 14/211 (6%) Query: 1 MREIVRPVTAALSVACLAIAMSAASNSGAFAQAKQQQMAPPAKQPAQAAPPAQAAAPAQD 60 MR VR AL++A A++A + A AQA + PAQ P Sbjct: 1 MRMFVRTTFVALAIAGSGAALTAVATLPALAQAAKDS-------------PAQPPGPTIS 47 Query: 61 QAPPIKQIALTDKQVDGALAAAKEMDPITAKLSQDAKPDPKIVAQLEGIAKKNGFASYDE 120 Q P +KQIALTDKQ++ LA+ K+MD IT KL ++A PD K+V QL+GIAKK GFASYD+ Sbjct: 48 QPPQLKQIALTDKQIENVLASQKDMDAITDKLPENAPPDQKVVTQLDGIAKKYGFASYDD 107 Query: 121 YNNVVDNISLVLGGFDPQTKKYIGPEAVLKAQIAQVQADKKMSAKDKKDALADLNDALKS 180 +N VVDNISLV+GG DP+TK Y+GPEAV+K QI QVQADKKM DKK L DLN ALK+ Sbjct: 108 FNVVVDNISLVMGGIDPKTKTYVGPEAVIKQQIDQVQADKKMKPDDKKQVLNDLNAALKA 167 Query: 181 PPPAVENKGNIDLVTKSYDKLMEEFGGSDDN 211 PP VENKGNIDLV K YDKL F G DDN Sbjct: 168 KPPEVENKGNIDLVVKYYDKLAAAF-GEDDN 197