BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0007.p (310 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08627058.1| Ku domain-containing protein [Bradyrhizobiace... 589 e-166 ref|NP_768228.1| hypothetical protein blr1588 [Bradyrhizobium ja... 525 e-147 ref|YP_001239331.1| hypothetical protein BBta_3324 [Bradyrhizobi... 486 e-135 ref|NP_774654.1| hypothetical protein bll8014 [Bradyrhizobium ja... 478 e-133 ref|YP_567295.1| hypothetical protein RPD_0154 [Rhodopseudomonas... 455 e-126 >ref|ZP_08627058.1| Ku domain-containing protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10338.1| Ku domain-containing protein [Bradyrhizobiaceae bacterium SG-6C] Length = 310 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 293/310 (94%), Positives = 298/310 (96%) Query: 1 MAPRANWKGFLRLSLVTCPVALYPATSESEKVSFNQLNRKTGHRIKYAKVDADTGEEVAN 60 MAPRANWKGFLRLSLVTCPVALYPATSESEKVSFNQLNRKTGHRIKYAKVDADTGEEVAN Sbjct: 1 MAPRANWKGFLRLSLVTCPVALYPATSESEKVSFNQLNRKTGHRIKYAKVDADTGEEVAN 60 Query: 61 EDIVKGYKVDDDTFIEVTREELENVALESTRTIEIDEFVDRSEIDPRYLIRPYYLRPDGK 120 EDIVKGYKVD DTFIEVT+EELENVALESTRTIEIDEFVDRSEIDPRYLIRPYYL PDGK Sbjct: 61 EDIVKGYKVDTDTFIEVTKEELENVALESTRTIEIDEFVDRSEIDPRYLIRPYYLVPDGK 120 Query: 121 VGHDAFAVIRETIREMNKVAIGRVVLTNREHIIALEPLDKGLMGTLLRYPYEVRSADEYF 180 VGHDAFAVIRETIREMNKVAIGRVVLTNREHIIAL+PLDKGLMGTLLRYPYEVRSADEYF Sbjct: 121 VGHDAFAVIRETIREMNKVAIGRVVLTNREHIIALDPLDKGLMGTLLRYPYEVRSADEYF 180 Query: 181 DGIQDVKVTKDMLDLAKHIVNQKAGHFEPNKFEDQYETALIDLINQKRAGKPITAKARPR 240 D IQDVKVTKDMLDLA+HIVNQKAGHFEP+KFEDQYETALIDLINQKRAGKPITAKARPR Sbjct: 181 DEIQDVKVTKDMLDLARHIVNQKAGHFEPDKFEDQYETALIDLINQKRAGKPITAKARPR 240 Query: 241 GENVVDLMDALRKSIGREATAPTEAPKKPAKKPRKAAAAQREMLMPITGKKAAKEGAAKK 300 GENVVDLMDALRKSIG A A TEAPKK AKKPRKAAA Q+EMLMPI GKK AKEG AKK Sbjct: 241 GENVVDLMDALRKSIGGGAAAATEAPKKTAKKPRKAAAGQKEMLMPIAGKKPAKEGVAKK 300 Query: 301 PAAKPQRKSA 310 PAAKPQRKSA Sbjct: 301 PAAKPQRKSA 310 >ref|NP_768228.1| hypothetical protein blr1588 [Bradyrhizobium japonicum USDA 110] dbj|BAC46853.1| conserved hypothetical protein [Bradyrhizobium japonicum USDA 110] Length = 323 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 255/310 (82%), Positives = 279/310 (90%), Gaps = 1/310 (0%) Query: 2 APRANWKGFLRLSLVTCPVALYPATSESEKVSFNQLNRKTGHRIKYAKVDADTGEEVANE 61 PRANWKGFLRLSLVTCPVALYPATSESEK+SFNQLNR+TGHRIKY KVD DTG+EV NE Sbjct: 7 GPRANWKGFLRLSLVTCPVALYPATSESEKISFNQLNRQTGHRIKYIKVDQDTGDEVPNE 66 Query: 62 DIVKGYKVDDDTFIEVTREELENVALESTRTIEIDEFVDRSEIDPRYLIRPYYLRPDGKV 121 DIVKGY+++ FIEVT+EELE +ALESTRTIEIDEFVD+SEIDPRYLIRPYYLRPDGKV Sbjct: 67 DIVKGYELEKGQFIEVTKEELEEIALESTRTIEIDEFVDKSEIDPRYLIRPYYLRPDGKV 126 Query: 122 GHDAFAVIRETIREMNKVAIGRVVLTNREHIIALEPLDKGLMGTLLRYPYEVRSADEYFD 181 GHDAFAVIRETIREMNKVAIGRVVLTNREHIIALEP+DKGL+GTLLRYPYEVRS EYFD Sbjct: 127 GHDAFAVIRETIREMNKVAIGRVVLTNREHIIALEPMDKGLVGTLLRYPYEVRSEQEYFD 186 Query: 182 GIQDVKVTKDMLDLAKHIVNQKAGHFEPNKFEDQYETALIDLINQKRAGKPITAKARPRG 241 IQDVKVTKDMLDLA+HIVNQKAG F+P KFED YE+AL++LINQKRAGK I K RP+G Sbjct: 187 EIQDVKVTKDMLDLARHIVNQKAGTFDPEKFEDHYESALVELINQKRAGKLIRPKERPKG 246 Query: 242 ENVVDLMDALRKSIGRE-ATAPTEAPKKPAKKPRKAAAAQREMLMPITGKKAAKEGAAKK 300 ENVVDLM+ALR+S+GRE AT P APKK AKKPRKAA+ Q+EMLMPI GKK AKE AKK Sbjct: 247 ENVVDLMEALRQSVGREKATEPANAPKKSAKKPRKAASGQKEMLMPIAGKKQAKEAGAKK 306 Query: 301 PAAKPQRKSA 310 A+ QR+SA Sbjct: 307 QPARSQRRSA 316 >ref|YP_001239331.1| hypothetical protein BBta_3324 [Bradyrhizobium sp. BTAi1] gb|ABQ35425.1| hypothetical protein BBta_3324 [Bradyrhizobium sp. BTAi1] Length = 310 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 247/311 (79%), Positives = 278/311 (89%), Gaps = 2/311 (0%) Query: 1 MAPRANWKGFLRLSLVTCPVALYPATSESEKVSFNQLNRKTGHRIKYAKVDADTGEEVAN 60 MAPRANWKGFLRLSLVTCPVALYPATSESEK+SFNQLNR+TGHRI+Y KVDADTGEEV N Sbjct: 1 MAPRANWKGFLRLSLVTCPVALYPATSESEKISFNQLNRQTGHRIRYVKVDADTGEEVPN 60 Query: 61 EDIVKGYKVDDDTFIEVTREELENVALESTRTIEIDEFVDRSEIDPRYLIRPYYLRPDGK 120 EDIVKGY+++ +IEV++EE E +ALESTRTIEIDEFV R++IDPRYLIRPYYLRPDGK Sbjct: 61 EDIVKGYELEKGQYIEVSKEEFEEIALESTRTIEIDEFVARTDIDPRYLIRPYYLRPDGK 120 Query: 121 VGHDAFAVIRETIREMNKVAIGRVVLTNREHIIALEPLDKGLMGTLLRYPYEVRSADEYF 180 VGHDAFAVIRETIREMNKVAIGR+VLTNREHIIALE +DKGL+GTLLRYPYE+RS EYF Sbjct: 121 VGHDAFAVIRETIREMNKVAIGRIVLTNREHIIALEAMDKGLVGTLLRYPYELRSEQEYF 180 Query: 181 DGIQDVKVTKDMLDLAKHIVNQKAGHFEPNKFEDQYETALIDLINQKRAGKPITAKARPR 240 + IQDVK+TKDMLDLA+HIV Q+AG F P KFED YETALIDLINQKRAGK I K RP+ Sbjct: 181 EEIQDVKITKDMLDLARHIVEQRAGTFAPEKFEDHYETALIDLINQKRAGKTIRPKDRPK 240 Query: 241 GENVVDLMDALRKSIGREATAPTEAPKKPAKKPRKAAAAQREMLMPITGKK-AAKEGAAK 299 GENVVDLM+ALR+S+G+ A+ PT+A KPAKKP+KAAA Q+EMLMPI GKK A KE +AK Sbjct: 241 GENVVDLMEALRRSVGQTAS-PTQAAAKPAKKPKKAAAGQKEMLMPIAGKKTAGKEASAK 299 Query: 300 KPAAKPQRKSA 310 K A+ QRKSA Sbjct: 300 KQASGRQRKSA 310 >ref|NP_774654.1| hypothetical protein bll8014 [Bradyrhizobium japonicum USDA 110] dbj|BAC53279.1| bll8014 [Bradyrhizobium japonicum USDA 110] Length = 308 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 253/310 (81%), Positives = 279/310 (90%), Gaps = 2/310 (0%) Query: 1 MAPRANWKGFLRLSLVTCPVALYPATSESEKVSFNQLNRKTGHRIKYAKVDADTGEEVAN 60 MAPRANWKGFLRLSLVTCPVALYPATSESEK+SFNQLNR+TGHRIKY KVDADTG+EV N Sbjct: 1 MAPRANWKGFLRLSLVTCPVALYPATSESEKISFNQLNRQTGHRIKYLKVDADTGDEVPN 60 Query: 61 EDIVKGYKVDDDTFIEVTREELENVALESTRTIEIDEFVDRSEIDPRYLIRPYYLRPDGK 120 EDIVKGY+++ D FIEVT+EELE +ALESTRTIEIDEFVDR++IDPRYLIRPYY+RPDGK Sbjct: 61 EDIVKGYQLEKDQFIEVTKEELEEIALESTRTIEIDEFVDRTDIDPRYLIRPYYIRPDGK 120 Query: 121 VGHDAFAVIRETIREMNKVAIGRVVLTNREHIIALEPLDKGLMGTLLRYPYEVRSADEYF 180 VGHDAFAVIRETIREM+KVAIGRVVLTNREHIIALEP+DKGL+GTLLRYPYEVRS EYF Sbjct: 121 VGHDAFAVIRETIREMDKVAIGRVVLTNREHIIALEPMDKGLVGTLLRYPYEVRSEQEYF 180 Query: 181 DGIQDVKVTKDMLDLAKHIVNQKAGHFEPNKFEDQYETALIDLINQKRAGKPITAKARPR 240 D IQDVKVTKDMLDLA+HIVNQKAG F+P KFED YETALI+LINQKRAGKPIT K +P Sbjct: 181 DEIQDVKVTKDMLDLARHIVNQKAGRFDPEKFEDHYETALIELINQKRAGKPITPKEKPA 240 Query: 241 GENVVDLMDALRKSIGREATAPTEAPKKPAKKPRKAAAAQREMLMPITGKKAAKEGAAKK 300 NVV+LM+ALR+S+G+EA KPAKKPRKAAA Q+EMLM I GKK AK+ AAKK Sbjct: 241 ATNVVNLMEALRRSVGQEAAPAKAG--KPAKKPRKAAAGQKEMLMSIAGKKPAKDAAAKK 298 Query: 301 PAAKPQRKSA 310 PAA +RKSA Sbjct: 299 PAAGARRKSA 308 >ref|YP_567295.1| hypothetical protein RPD_0154 [Rhodopseudomonas palustris BisB5] gb|ABE37394.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 328 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 224/320 (70%), Positives = 265/320 (82%), Gaps = 13/320 (4%) Query: 1 MAPRANWKGFLRLSLVTCPVALYPATSESEKVSFNQLNRKTGHRIKYAKVDADTGEEVAN 60 MAPRANWKGFLRLSLVTCPVAL+PATS++EK+SFNQ+NRKTG+RIKY KVDADTGEEV++ Sbjct: 1 MAPRANWKGFLRLSLVTCPVALFPATSDAEKISFNQINRKTGNRIKYTKVDADTGEEVSS 60 Query: 61 EDIVKGYKVDDDTFIEVTREELENVALESTRTIEIDEFVDRSEIDPRYLIRPYYLRPDGK 120 +DI+KGYKVD D++IE+T++EL+ +ALESTRTIEID+FV +SEID YL+RPYY+ PDGK Sbjct: 61 DDIMKGYKVDTDSYIEITKDELDAIALESTRTIEIDQFVPKSEIDDLYLVRPYYIVPDGK 120 Query: 121 VGHDAFAVIRETIREMNKVAIGRVVLTNREHIIALEPLDKGLMGTLLRYPYEVRSADEYF 180 VGHDA+AVIRETIR M++VA+ RVVLTNREH+IALE D GLMG LLRYPYEVR A EYF Sbjct: 121 VGHDAYAVIRETIRTMDRVALARVVLTNREHVIALEARDNGLMGMLLRYPYEVRDASEYF 180 Query: 181 DGIQDVKVTKDMLDLAKHIVNQKAGHFEPNKFEDQYETALIDLINQKRAGKPITAKARPR 240 D IQDVK+TKDMLDLA+HIV Q++GHFEP+KFED YE AL +LINQKR G+PI KARPR Sbjct: 181 DDIQDVKITKDMLDLARHIVEQRSGHFEPDKFEDHYEAALTELINQKRNGQPIAPKARPR 240 Query: 241 GENVVDLMDALRKSI----GREATAPTEAPKKPAKKP-----RKAAAAQREMLMPITGKK 291 G+NVVDLMDALRKS+ A + +KPA KP RK A Q+EML+PI+G K Sbjct: 241 GDNVVDLMDALRKSLGGAKPAPAAGKAASAEKPAAKPARTKKRKTAPGQKEMLLPISGAK 300 Query: 292 --AAKEGAAKKPAAKPQRKS 309 AAK+ A K A KP R S Sbjct: 301 SAAAKQDAGK--AKKPARSS 318