BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0006.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774646.1| hypothetical protein blr8006 [Bradyrhizobium ja...   159   2e-37
ref|YP_570757.1| hypothetical protein RPD_3633 [Rhodopseudomonas...   150   6e-35
ref|NP_768227.1| hypothetical protein bll1587 [Bradyrhizobium ja...   143   1e-32
ref|YP_001239430.1| hypothetical protein BBta_3430 [Bradyrhizobi...   130   6e-29
ref|YP_001239325.1| hypothetical protein BBta_3318 [Bradyrhizobi...   127   7e-28

>ref|NP_774646.1| hypothetical protein blr8006 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53271.1| blr8006 [Bradyrhizobium japonicum USDA 110]
          Length = 133

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/127 (59%), Positives = 97/127 (76%), Gaps = 8/127 (6%)

Query: 1   MPTPKQMEKLAAEAARRPSPSTA-APEAPLPAEYWESVLRDPRA----GTTGAQMRQRCL 55
           MPTPKQM+K+AA A +  S     AP+A LPAEYW+++L DPRA      +G  +R   L
Sbjct: 10  MPTPKQMQKMAALAGKNVSQKPGLAPDADLPAEYWQALLDDPRAEVRSAASGGTLR---L 66

Query: 56  SEIQRHVLRVSCRRCERTLEIQTADAVRLYGRNAVWKDVAQRLLDNTCQQRTGRHEEDGC 115
           S+ ++H+LRV+CRRC RT+EIQ  DAVRLYGR+AVW+DV QRLLDN C QRTGRH+EDGC
Sbjct: 67  SQFRQHILRVTCRRCGRTVEIQKVDAVRLYGRDAVWRDVGQRLLDNMCSQRTGRHDEDGC 126

Query: 116 WPAFETP 122
           WP+++ P
Sbjct: 127 WPSYDMP 133


>ref|YP_570757.1| hypothetical protein RPD_3633 [Rhodopseudomonas palustris BisB5]
 gb|ABE40856.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 135

 Score =  150 bits (379), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 77/126 (61%), Positives = 90/126 (71%), Gaps = 4/126 (3%)

Query: 1   MPTPKQMEKLAAEAARRP--SPSTAAPEAPLPAEYWESVLRDPRAGT--TGAQMRQRCLS 56
           MPTPKQMEKLA EA RR   + ST    A +P EYW++VL DP A     G  ++QR LS
Sbjct: 10  MPTPKQMEKLAIEAVRRKPAADSTGMDAADMPPEYWKAVLSDPYADARPIGVPIQQRRLS 69

Query: 57  EIQRHVLRVSCRRCERTLEIQTADAVRLYGRNAVWKDVAQRLLDNTCQQRTGRHEEDGCW 116
           EI RH LRVSCRRC+R +EIQTADAVRLYGR+  WK+   RLLD+ C+QRTG  E+ GCW
Sbjct: 70  EIPRHALRVSCRRCDRVVEIQTADAVRLYGRHTTWKEAGTRLLDDGCRQRTGSREDGGCW 129

Query: 117 PAFETP 122
           P FE P
Sbjct: 130 PNFEMP 135


>ref|NP_768227.1| hypothetical protein bll1587 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46852.1| bll1587 [Bradyrhizobium japonicum USDA 110]
          Length = 181

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 87/122 (71%), Gaps = 3/122 (2%)

Query: 1   MPTPKQMEKLAAEAARRPS-PSTAAPEAPLPAEYWESVLRDP--RAGTTGAQMRQRCLSE 57
           MPTPKQMEKLAA   ++ +   +  P+  +P EYW ++L D   +A  +G     + L E
Sbjct: 57  MPTPKQMEKLAASMGKKAARERSLGPKDDMPDEYWHALLDDADDQAAVSGRSSPGQRLCE 116

Query: 58  IQRHVLRVSCRRCERTLEIQTADAVRLYGRNAVWKDVAQRLLDNTCQQRTGRHEEDGCWP 117
           + +HVLRVSCRRCER +EIQ ADA RLYG+ A WK+V  RLLDNTCQ RTGRHEEDGCWP
Sbjct: 117 MPQHVLRVSCRRCERIVEIQKADAARLYGQQASWKEVGHRLLDNTCQNRTGRHEEDGCWP 176

Query: 118 AF 119
           AF
Sbjct: 177 AF 178


>ref|YP_001239430.1| hypothetical protein BBta_3430 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35524.1| hypothetical protein BBta_3430 [Bradyrhizobium sp. BTAi1]
          Length = 134

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 86/127 (67%), Gaps = 9/127 (7%)

Query: 1   MPTPKQMEKLAAE-AARRPSPSTAAPEAPLPAEYWESVLRDPRAGTTG------AQMRQR 53
           MPT +QM++LA     + P+    AP A LP EYWE++L    AG  G      A  R  
Sbjct: 10  MPTRRQMDQLARRVGGKDPNARGLAPNADLPPEYWEALLE--AAGADGDHVGLDASRRLL 67

Query: 54  CLSEIQRHVLRVSCRRCERTLEIQTADAVRLYGRNAVWKDVAQRLLDNTCQQRTGRHEED 113
            LS++  HVLRV CRRC RT+EIQ ADA RLYG  +VW+DV +RLLD+TC QRTGR+EED
Sbjct: 68  RLSQVPDHVLRVGCRRCGRTVEIQKADAARLYGPESVWRDVGRRLLDDTCTQRTGRYEED 127

Query: 114 GCWPAFE 120
           GCWP+F+
Sbjct: 128 GCWPSFD 134


>ref|YP_001239325.1| hypothetical protein BBta_3318 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35419.1| hypothetical protein BBta_3318 [Bradyrhizobium sp. BTAi1]
          Length = 137

 Score =  127 bits (318), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 80/125 (64%), Gaps = 5/125 (4%)

Query: 1   MPTPKQMEKLAAEAARRPSPSTA-APEAPLPAEYWESVLRDPRAG----TTGAQMRQRCL 55
           MP  KQME++A    R+  P    AP   LP EYW++ L    A     +    + Q  L
Sbjct: 13  MPNRKQMEEVARYLGRKAPPVRGLAPNDCLPEEYWQAPLEAANAAERLPSPRGSLSQLRL 72

Query: 56  SEIQRHVLRVSCRRCERTLEIQTADAVRLYGRNAVWKDVAQRLLDNTCQQRTGRHEEDGC 115
            EI  HVLRV CRRC RT+EIQ  DAVRLYG  A W+DV QRLLD+TC QRTGR+EEDGC
Sbjct: 73  GEIADHVLRVGCRRCGRTVEIQKDDAVRLYGSEATWRDVGQRLLDDTCTQRTGRYEEDGC 132

Query: 116 WPAFE 120
           WP+F+
Sbjct: 133 WPSFD 137