BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0005.p         (149 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08627060.1| hypothetical protein CSIRO_0117 [Bradyrhizobi...   293   5e-78
ref|YP_570758.1| hypothetical protein RPD_3634 [Rhodopseudomonas...   240   4e-62
ref|YP_001990150.1| hypothetical protein Rpal_1133 [Rhodopseudom...   237   6e-61
ref|YP_001992781.1| hypothetical protein Rpal_3807 [Rhodopseudom...   233   9e-60
ref|YP_001239326.1| hypothetical protein BBta_3319 [Bradyrhizobi...   224   3e-57

>ref|ZP_08627060.1| hypothetical protein CSIRO_0117 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP10340.1| hypothetical protein CSIRO_0117 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 149

 Score =  293 bits (751), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 140/148 (94%), Positives = 143/148 (96%)

Query: 1   MAPKYHPTPLSGGDRKALAKELGKARAMANILATQSAEMRAKGEAMIQQADRLLCESWNE 60
           MAPKYHPTPLSGGDRKALAKELGKARAMANILA QS EMRAKGEAMIQQADRLLCESWNE
Sbjct: 1   MAPKYHPTPLSGGDRKALAKELGKARAMANILAAQSVEMRAKGEAMIQQADRLLCESWNE 60

Query: 61  RMWSDGEPIDPSPTIDQAVNGGFPWLEIRCARCKTPSDVDLAAMKHPPTTFVHDLASRLR 120
           RMWSDGEPIDPSPTIDQAVNGG+PWLEI CARCKTPSDVDLAAMKHPPTTFVHDLASRLR
Sbjct: 61  RMWSDGEPIDPSPTIDQAVNGGYPWLEIMCARCKTPSDVDLAAMKHPPTTFVHDLASRLR 120

Query: 121 CRKCAKAGRRPSATLLQLTWQPRHPRTE 148
           CRKC +AGRRPSATLLQL WQPRHPRT+
Sbjct: 121 CRKCVRAGRRPSATLLQLAWQPRHPRTD 148


>ref|YP_570758.1| hypothetical protein RPD_3634 [Rhodopseudomonas palustris BisB5]
 gb|ABE40857.1| hypothetical protein RPD_3634 [Rhodopseudomonas palustris BisB5]
          Length = 149

 Score =  240 bits (613), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 111/144 (77%), Positives = 128/144 (88%)

Query: 1   MAPKYHPTPLSGGDRKALAKELGKARAMANILATQSAEMRAKGEAMIQQADRLLCESWNE 60
           MA KYHPTPLSGGDRKAL KEL  AR M  ILA QS EMR+KG+A+I+QADRLLCESWNE
Sbjct: 1   MARKYHPTPLSGGDRKALKKELRSARGMTGILAAQSDEMRSKGDALIRQADRLLCESWNE 60

Query: 61  RMWSDGEPIDPSPTIDQAVNGGFPWLEIRCARCKTPSDVDLAAMKHPPTTFVHDLASRLR 120
           RMW+DGEP+DPSPTIDQA NGGFPWL++ C+RC+TP+DVDLAA++ PPTTFVHDLASRLR
Sbjct: 61  RMWADGEPVDPSPTIDQATNGGFPWLQVECSRCRTPNDVDLAALRRPPTTFVHDLASRLR 120

Query: 121 CRKCAKAGRRPSATLLQLTWQPRH 144
           CRKCA+ GRRP+ATLLQL  + R+
Sbjct: 121 CRKCAQTGRRPAATLLQLAQRRRN 144


>ref|YP_001990150.1| hypothetical protein Rpal_1133 [Rhodopseudomonas palustris TIE-1]
 gb|ACE99674.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 149

 Score =  237 bits (604), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 114/144 (79%), Positives = 125/144 (86%)

Query: 1   MAPKYHPTPLSGGDRKALAKELGKARAMANILATQSAEMRAKGEAMIQQADRLLCESWNE 60
           MAPK+HPTPLSGGDRKAL KELG+ARAM  ILA QSAE R KGEA+I+QADRLL ESWNE
Sbjct: 1   MAPKHHPTPLSGGDRKALQKELGRARAMTTILAAQSAEARTKGEALIRQADRLLSESWNE 60

Query: 61  RMWSDGEPIDPSPTIDQAVNGGFPWLEIRCARCKTPSDVDLAAMKHPPTTFVHDLASRLR 120
           RMW+DG  +DPSPTIDQAVNGG+PWLEI C+RC T  DVDLAA++HPPTTFVHDLASRLR
Sbjct: 61  RMWADGGLMDPSPTIDQAVNGGYPWLEIECSRCMTKRDVDLAALRHPPTTFVHDLASRLR 120

Query: 121 CRKCAKAGRRPSATLLQLTWQPRH 144
           C KCAKA RRP ATLLQL  +PR 
Sbjct: 121 CGKCAKANRRPPATLLQLAQRPRQ 144


>ref|YP_001992781.1| hypothetical protein Rpal_3807 [Rhodopseudomonas palustris TIE-1]
 gb|ACF02306.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 149

 Score =  233 bits (593), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 109/144 (75%), Positives = 127/144 (88%)

Query: 1   MAPKYHPTPLSGGDRKALAKELGKARAMANILATQSAEMRAKGEAMIQQADRLLCESWNE 60
           MAPK+HPTPLSGGDRKAL KELG+ARAM +ILA QSAE RAKGEA+I+ AD+LLCESWNE
Sbjct: 1   MAPKHHPTPLSGGDRKALQKELGRARAMTSILAAQSAEARAKGEALIRTADKLLCESWNE 60

Query: 61  RMWSDGEPIDPSPTIDQAVNGGFPWLEIRCARCKTPSDVDLAAMKHPPTTFVHDLASRLR 120
           RMW+DG PIDPSPTIDQAVNGG+ W+EI C+RC+ P++VDLA ++ P TT VHDLASRLR
Sbjct: 61  RMWADGGPIDPSPTIDQAVNGGYCWIEIECSRCRAPNEVDLAGLRRPSTTCVHDLASRLR 120

Query: 121 CRKCAKAGRRPSATLLQLTWQPRH 144
           C KCAKAG+RP+ATLLQL  + RH
Sbjct: 121 CSKCAKAGKRPAATLLQLAQRARH 144


>ref|YP_001239326.1| hypothetical protein BBta_3319 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35420.1| hypothetical protein BBta_3319 [Bradyrhizobium sp. BTAi1]
          Length = 149

 Score =  224 bits (572), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 123/144 (85%)

Query: 1   MAPKYHPTPLSGGDRKALAKELGKARAMANILATQSAEMRAKGEAMIQQADRLLCESWNE 60
           MAPK+HPTPLSGGDRKALAKELG+ARAM  ILA Q+AE+RA+GEA+I+QADRLLCESWNE
Sbjct: 1   MAPKHHPTPLSGGDRKALAKELGRARAMTTILAEQAAEVRAQGEALIRQADRLLCESWNE 60

Query: 61  RMWSDGEPIDPSPTIDQAVNGGFPWLEIRCARCKTPSDVDLAAMKHPPTTFVHDLASRLR 120
           RMW++G P+DPSPTIDQA+NGG+PWL I C+RCK   +VD A ++ P TTF+HDLA RLR
Sbjct: 61  RMWANGGPVDPSPTIDQAINGGYPWLGIACSRCKARREVDPATLRRPSTTFIHDLAGRLR 120

Query: 121 CRKCAKAGRRPSATLLQLTWQPRH 144
           C +CAK  RRP ATLLQL  +PR 
Sbjct: 121 CSRCAKVNRRPPATLLQLAQRPRQ 144