BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0004.p         (192 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08627056.1| hypothetical protein CSIRO_0113 [Bradyrhizobi...   261   3e-68
ref|YP_319461.1| ParB-like nuclease [Nitrobacter winogradskyi Nb...   227   7e-58
ref|YP_001685432.1| nuclease [Caulobacter sp. K31] >gi|167350199...   226   1e-57
ref|YP_002287035.1| ParB domain protein nuclease [Oligotropha ca...   222   2e-56
gb|AEJ26467.1| Putative ParB nuclease [Paracoccus denitrificans ...   219   1e-55

>ref|ZP_08627056.1| hypothetical protein CSIRO_0113 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP10336.1| hypothetical protein CSIRO_0113 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 671

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/149 (84%), Positives = 136/149 (91%)

Query: 1   MLAKSVEIIPVSGTEVLIPLNKLKKSPNNARRTPHSEAAIEAYAASIAAKGILQNLVVEP 60
           M AK VE +P +GT+VLIPLNKLKKSP NAR+TPHS+AAIEAYAASIAAKGILQNLVVEP
Sbjct: 1   MSAKHVEQLPENGTQVLIPLNKLKKSPKNARKTPHSDAAIEAYAASIAAKGILQNLVVEP 60

Query: 61  EFDGEGTATGFYFVTIGEGRRLAQLLRVQRKEIKKGEPIRCIVDTANDPHEISLDENVTR 120
           E DGE  ATGFYFVTIGEGRRLAQ+LRV+RKEIKK EPIRCIVDTANDPHEISLDENVTR
Sbjct: 61  EVDGENAATGFYFVTIGEGRRLAQVLRVKRKEIKKTEPIRCIVDTANDPHEISLDENVTR 120

Query: 121 ESTHPADQFAAFRKLADERGLGVEEIAAR 149
           E+ HPADQF AF+KLA+ERG G EEIAAR
Sbjct: 121 ENMHPADQFEAFKKLAEERGFGAEEIAAR 149


>ref|YP_319461.1| ParB-like nuclease [Nitrobacter winogradskyi Nb-255]
 gb|ABA06109.1| ParB-like nuclease [Nitrobacter winogradskyi Nb-255]
          Length = 726

 Score =  227 bits (578), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 110/141 (78%), Positives = 119/141 (84%)

Query: 9   IPVSGTEVLIPLNKLKKSPNNARRTPHSEAAIEAYAASIAAKGILQNLVVEPEFDGEGTA 68
           +  SG  V IPLNKLKKSP NAR+ PH EA IEAYAASIAAKGILQNLVVEPE D EG  
Sbjct: 54  VAASGETVFIPLNKLKKSPRNARKIPHGEADIEAYAASIAAKGILQNLVVEPERDEEGQP 113

Query: 69  TGFYFVTIGEGRRLAQLLRVQRKEIKKGEPIRCIVDTANDPHEISLDENVTRESTHPADQ 128
           TGFYFVTIGEGRRLAQLLR +RK+IKK EPIRC++DTANDP EISLDENVTR + HPADQ
Sbjct: 114 TGFYFVTIGEGRRLAQLLRAKRKQIKKTEPIRCVIDTANDPFEISLDENVTRTAMHPADQ 173

Query: 129 FAAFRKLADERGLGVEEIAAR 149
           F AFR+LA+ RG G EEIAAR
Sbjct: 174 FEAFRELAETRGWGAEEIAAR 194


>ref|YP_001685432.1| nuclease [Caulobacter sp. K31]
 gb|ABZ72934.1| ParB domain protein nuclease [Caulobacter sp. K31]
          Length = 694

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/139 (78%), Positives = 119/139 (85%)

Query: 11  VSGTEVLIPLNKLKKSPNNARRTPHSEAAIEAYAASIAAKGILQNLVVEPEFDGEGTATG 70
           V+G EVLIPLNKLKKS  NAR+TPHSEA+IEA AASI AKGILQNLVVEPEFD EG  TG
Sbjct: 19  VNGAEVLIPLNKLKKSHRNARKTPHSEASIEAKAASIHAKGILQNLVVEPEFDAEGAETG 78

Query: 71  FYFVTIGEGRRLAQLLRVQRKEIKKGEPIRCIVDTANDPHEISLDENVTRESTHPADQFA 130
           FY VTIGEGRRLAQLLR +RK+IKK EPIRC++DT NDP EISLDENVTRE  HPADQF 
Sbjct: 79  FYLVTIGEGRRLAQLLRAKRKQIKKTEPIRCVIDTQNDPAEISLDENVTREDLHPADQFE 138

Query: 131 AFRKLADERGLGVEEIAAR 149
            FR+LA+ +G G EEIAAR
Sbjct: 139 RFRELAENKGWGAEEIAAR 157


>ref|YP_002287035.1| ParB domain protein nuclease [Oligotropha carboxidovorans OM5]
 ref|YP_004631453.1| ParB-like domain-containing protein [Oligotropha carboxidovorans
           OM5]
 gb|ACI91170.1| ParB domain protein nuclease [Oligotropha carboxidovorans OM5]
 gb|AEI01637.1| ParB-like domain protein [Oligotropha carboxidovorans OM4]
 gb|AEI05212.1| ParB-like domain protein [Oligotropha carboxidovorans OM5]
          Length = 697

 Score =  222 bits (565), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 120/141 (85%)

Query: 9   IPVSGTEVLIPLNKLKKSPNNARRTPHSEAAIEAYAASIAAKGILQNLVVEPEFDGEGTA 68
           +P +G  V IPLNKLKK P NAR+TPHSEA+IEA AASIAAKGILQNLVVEPE DGEG  
Sbjct: 10  VPENGETVFIPLNKLKKHPKNARKTPHSEASIEAKAASIAAKGILQNLVVEPELDGEGEP 69

Query: 69  TGFYFVTIGEGRRLAQLLRVQRKEIKKGEPIRCIVDTANDPHEISLDENVTRESTHPADQ 128
           TG Y V+IGEGRRLAQ+LRV+RK+IKK EPIRC++DTAND  EISLDENVTRE+ HPAD+
Sbjct: 70  TGCYLVSIGEGRRLAQMLRVKRKKIKKTEPIRCVIDTANDAAEISLDENVTRENLHPADE 129

Query: 129 FAAFRKLADERGLGVEEIAAR 149
           F  FR+LA+ RG G EEIAAR
Sbjct: 130 FERFRELAENRGWGAEEIAAR 150


>gb|AEJ26467.1| Putative ParB nuclease [Paracoccus denitrificans SD1]
          Length = 160

 Score =  219 bits (559), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 117/137 (85%)

Query: 13  GTEVLIPLNKLKKSPNNARRTPHSEAAIEAYAASIAAKGILQNLVVEPEFDGEGTATGFY 72
           GT V IPLNKLKK P NAR+TPHSEA+IEA AASIAAKGILQNLV+EPE D +G  TGFY
Sbjct: 14  GTTVFIPLNKLKKHPKNARKTPHSEASIEAKAASIAAKGILQNLVMEPEADADGAVTGFY 73

Query: 73  FVTIGEGRRLAQLLRVQRKEIKKGEPIRCIVDTANDPHEISLDENVTRESTHPADQFAAF 132
            V+IGEGRRLAQ+LRV+RKEIKK EP+RC++DTAND  EISLDENVTRE  HPADQF   
Sbjct: 74  LVSIGEGRRLAQMLRVKRKEIKKTEPVRCVIDTANDAAEISLDENVTREDLHPADQFERL 133

Query: 133 RKLADERGLGVEEIAAR 149
           R+LA++RG G EEIAAR
Sbjct: 134 RELAEDRGWGAEEIAAR 150