BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0012.p (420 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207529.1| hypothetical protein BRADO5641 [Bradyrhizobi... 634 e-180 ref|ZP_08630941.1| hypothetical protein CSIRO_4052 [Bradyrhizobi... 634 e-179 ref|YP_001241987.1| hypothetical protein BBta_6156 [Bradyrhizobi... 630 e-178 ref|NP_773225.1| hypothetical protein bll6585 [Bradyrhizobium ja... 626 e-177 ref|YP_781052.1| hypothetical protein RPE_2128 [Rhodopseudomonas... 625 e-177 >ref|YP_001207529.1| hypothetical protein BRADO5641 [Bradyrhizobium sp. ORS 278] emb|CAL79312.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 759 Score = 634 bits (1636), Expect = e-180, Method: Compositional matrix adjust. Identities = 324/416 (77%), Positives = 354/416 (85%), Gaps = 23/416 (5%) Query: 27 RTRPAAKYLTGFYVALSFGGMVGGLFAGLIAPFTFSWVAEYPILLALAXLA-------VA 79 RTRPAA+YLTGFYVALSFGGMVGGLFAGLIAPFTFSWVAEYPILLALA L + Sbjct: 344 RTRPAARYLTGFYVALSFGGMVGGLFAGLIAPFTFSWVAEYPILLALAALCRPAADERLP 403 Query: 80 LIAPSY----------------SAGDIFNWFDVHRVWVIGAVGVLSALLALALNANRWKI 123 I Y G + + + HRVWV GAVG L+ALLAL LNA RWK+ Sbjct: 404 KITRWYWIPLAVIALALLAPASMTGKVTTYLEDHRVWVAGAVGALAALLALLLNAGRWKV 463 Query: 124 FATVVVALVVLRAYPSDDGRVETVRSFFGVHKIVVTANGQYHVLMHGTTIHGAEKFKNDD 183 FAT +ALV++RAYP+DDGRVETVRSFFGVHKIVVT++G YHVLMHGTTIHGAEK+ N D Sbjct: 464 FATAALALVLIRAYPADDGRVETVRSFFGVHKIVVTSDGHYHVLMHGTTIHGAEKYLNAD 523 Query: 184 GTPVAGTPEPISYYHKDGGIGRAISAIRERKGAPLKVAVIGLGSGTLTCASAPGEDWRFF 243 G+ V G PEPI+YYHKDGGIGRAI+AIRERKGAPLKVAVIG+GSGTLTCA+ PGEDW++F Sbjct: 524 GSKVTGRPEPITYYHKDGGIGRAITAIRERKGAPLKVAVIGVGSGTLTCAAEPGEDWKYF 583 Query: 244 EIDQSMVDTARDPKYFTYIQNCEPNLKPVIGDARLTFAKEPDGAYDLIIVDAYSSDAIPI 303 EIDQ+MVDTA DPKYF+YI+NC P+ KPVIGDARLTFAKEPDG YDLIIVDAYSSDAIPI Sbjct: 584 EIDQTMVDTASDPKYFSYIKNCAPDFKPVIGDARLTFAKEPDGVYDLIIVDAYSSDAIPI 643 Query: 304 HLATEEAMAIYKEKLAPQGAVVMHVSNRHLELASVVVGIADANDMKSWVYSEDSGRDNEY 363 HLATEEAMAIYK KLAPQGAVVMHVSNRHLEL SVVVGIADANDMKSWVY+EDSGRD+EY Sbjct: 644 HLATEEAMAIYKAKLAPQGAVVMHVSNRHLELESVVVGIADANDMKSWVYNEDSGRDDEY 703 Query: 364 IFSTSVVVSAREEEDVGKLASSDVWTETEADEKQRVWTDDYSNVLGAVYRRLRDGE 419 IFST VVVSAREE DVGKLASSD WTETE + +RVWTDDYSN+LGAVYRRLRDGE Sbjct: 704 IFSTDVVVSAREEADVGKLASSDKWTETEPTDGERVWTDDYSNILGAVYRRLRDGE 759 >ref|ZP_08630941.1| hypothetical protein CSIRO_4052 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06473.1| hypothetical protein CSIRO_4052 [Bradyrhizobiaceae bacterium SG-6C] Length = 758 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 306/416 (73%), Positives = 343/416 (82%), Gaps = 22/416 (5%) Query: 27 RTRPAAKYLTGFYVALSFGGMVGGLFAGLIAPFTFSWVAEYPILLALAXLA--------- 77 RTRPAA+YLTGFYVALSFGGMVGGLFAGLIAP+TFSW+AEYPILLALA L Sbjct: 343 RTRPAARYLTGFYVALSFGGMVGGLFAGLIAPYTFSWIAEYPILLALAALCRPAGTTAKR 402 Query: 78 -------------VALIAPSYSAGDIFNWFDVHRVWVIGAVGVLSALLALALNANRWKIF 124 LIA SY G I + + +R+WV+ A + LLA+ RW+I Sbjct: 403 GGFSLWLLAVIVGFVLIAVSYRQGTITEFLETNRIWVVAAFASVMMLLAVLWRIGRWRIA 462 Query: 125 ATVVVALVVLRAYPSDDGRVETVRSFFGVHKIVVTANGQYHVLMHGTTIHGAEKFKNDDG 184 V + L+++R YP+DDGRVETVRSFFGVHKIVVTANGQYHVLMHGTTIHGAEKF NDDG Sbjct: 463 GLVALGLMLIRVYPADDGRVETVRSFFGVHKIVVTANGQYHVLMHGTTIHGAEKFLNDDG 522 Query: 185 TPVAGTPEPISYYHKDGGIGRAISAIRERKGAPLKVAVIGLGSGTLTCASAPGEDWRFFE 244 TP+ G PEPISYYHKDGGIGRAI+AIRERKG P++VAVIGLGSGTL C S PGEDW +FE Sbjct: 523 TPIKGRPEPISYYHKDGGIGRAIAAIRERKGGPIRVAVIGLGSGTLACQSMPGEDWTYFE 582 Query: 245 IDQSMVDTARDPKYFTYIQNCEPNLKPVIGDARLTFAKEPDGAYDLIIVDAYSSDAIPIH 304 IDQ+MVDTARDPKYFTYI +C+P +KPVIGDARLTFAKEPDGAYDLIIVDAYSSDAIPIH Sbjct: 583 IDQTMVDTARDPKYFTYINSCDPKMKPVIGDARLTFAKEPDGAYDLIIVDAYSSDAIPIH 642 Query: 305 LATEEAMAIYKEKLAPQGAVVMHVSNRHLELASVVVGIADANDMKSWVYSEDSGRDNEYI 364 LATEEAMAIYK KLAPQGAVVMHVSNRHLELASVVVGIA+ ND+KSWV++EDSGRD EYI Sbjct: 643 LATEEAMAIYKAKLAPQGAVVMHVSNRHLELASVVVGIAEENDLKSWVFNEDSGRDAEYI 702 Query: 365 FSTSVVVSAREEEDVGKLASSDVWTETEADEKQRVWTDDYSNVLGAVYRRLRDGEQ 420 F+T+VV+SAREE DVGK+AS + W TEA E QRVWTDDYSNVLGAV+RRLR ++ Sbjct: 703 FTTNVVISAREEADVGKIASDEKWAMTEATEGQRVWTDDYSNVLGAVWRRLRTPDE 758 >ref|YP_001241987.1| hypothetical protein BBta_6156 [Bradyrhizobium sp. BTAi1] gb|ABQ38081.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 759 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 320/417 (76%), Positives = 357/417 (85%), Gaps = 24/417 (5%) Query: 27 RTRPAAKYLTGFYVALSFGGMVGGLFAGLIAPFTFSWVAEYPILLALAXL---------- 76 RTRPAAKYLTGFYVALSFGGMVGGLFAGLIAP++FSWVAEYPILLALA L Sbjct: 343 RTRPAAKYLTGFYVALSFGGMVGGLFAGLIAPYSFSWVAEYPILLALAALCRPGEKAERL 402 Query: 77 --------------AVALIAPSYSAGDIFNWFDVHRVWVIGAVGVLSALLALALNANRWK 122 AVAL+ P+ G + + HRV+V GAVG L+AL+AL L+A RWK Sbjct: 403 PRITRWYWIALAIIAVALLMPAGLTGKVTTYLADHRVYVAGAVGALAALIALLLDAGRWK 462 Query: 123 IFATVVVALVVLRAYPSDDGRVETVRSFFGVHKIVVTANGQYHVLMHGTTIHGAEKFKND 182 +FAT +ALV++RAYP+DDGRVETVRSFFGVHKIVVT++G YHVLMHGTTIHGA+K+ N Sbjct: 463 VFATAALALVLIRAYPADDGRVETVRSFFGVHKIVVTSDGHYHVLMHGTTIHGAQKYLNA 522 Query: 183 DGTPVAGTPEPISYYHKDGGIGRAISAIRERKGAPLKVAVIGLGSGTLTCASAPGEDWRF 242 DG+ V G PEPI+YYHKDGGIGRAI+AIRERKGAPLKVAVIG+GSGTLTCA+ PGE+W++ Sbjct: 523 DGSKVTGRPEPITYYHKDGGIGRAITAIRERKGAPLKVAVIGVGSGTLTCAAEPGENWKY 582 Query: 243 FEIDQSMVDTARDPKYFTYIQNCEPNLKPVIGDARLTFAKEPDGAYDLIIVDAYSSDAIP 302 FEIDQ+MVDTA DPKYF+YI++C P+ KPVIGDARLTFAKEPDG YDLIIVDAYSSDAIP Sbjct: 583 FEIDQTMVDTASDPKYFSYIKSCAPDFKPVIGDARLTFAKEPDGVYDLIIVDAYSSDAIP 642 Query: 303 IHLATEEAMAIYKEKLAPQGAVVMHVSNRHLELASVVVGIADANDMKSWVYSEDSGRDNE 362 IHLATEEAMAIYK KLAPQGAVVMHVSNRHLEL SVVVGIADANDMKSWVY+EDSGRD+E Sbjct: 643 IHLATEEAMAIYKAKLAPQGAVVMHVSNRHLELESVVVGIADANDMKSWVYNEDSGRDDE 702 Query: 363 YIFSTSVVVSAREEEDVGKLASSDVWTETEADEKQRVWTDDYSNVLGAVYRRLRDGE 419 YIFST VVVSAREE DVGKLASSD WTETE + +RVWTDDYSN+LGAVYRRLRDGE Sbjct: 703 YIFSTDVVVSAREEADVGKLASSDKWTETEPTDGERVWTDDYSNILGAVYRRLRDGE 759 >ref|NP_773225.1| hypothetical protein bll6585 [Bradyrhizobium japonicum USDA 110] dbj|BAC51850.1| bll6585 [Bradyrhizobium japonicum USDA 110] Length = 861 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 312/416 (75%), Positives = 353/416 (84%), Gaps = 23/416 (5%) Query: 27 RTRPAAKYLTGFYVALSFGGMVGGLFAGLIAPFTFSWVAEYPILLALAXLA-------VA 79 RTRPAAKYLTGFYVALSFGGMVGGLFAGL+APFTFSW+AEYPIL+ALA L VA Sbjct: 446 RTRPAAKYLTGFYVALSFGGMVGGLFAGLVAPFTFSWIAEYPILIALAALCRPSANERVA 505 Query: 80 LIA----------------PSYSAGDIFNWFDVHRVWVIGAVGVLSALLALALNANRWKI 123 I PSY+ G + WF+ HRVW+ G+VGVL+ALLALALNA RWKI Sbjct: 506 RIVKWYWLALAALAVALVAPSYTTGSLSTWFEDHRVWIAGSVGVLAALLALALNAGRWKI 565 Query: 124 FATVVVALVVLRAYPSDDGRVETVRSFFGVHKIVVTANGQYHVLMHGTTIHGAEKFKNDD 183 FATV +AL ++R YP+D+GRV TVRSFFGVHKIV T G +HVLMHGTTIHGAE+F+N+D Sbjct: 566 FATVALALALIRVYPADEGRVTTVRSFFGVHKIVETPGGYFHVLMHGTTIHGAERFRNND 625 Query: 184 GTPVAGTPEPISYYHKDGGIGRAISAIRERKGAPLKVAVIGLGSGTLTCASAPGEDWRFF 243 GTPV G PE I+YYHKDGGIG+AI+A+RERKGAPLKVA IG+GSGTL CA+ PGE W+FF Sbjct: 626 GTPVTGRPEAITYYHKDGGIGQAITALRERKGAPLKVAAIGVGSGTLACAAEPGESWKFF 685 Query: 244 EIDQSMVDTARDPKYFTYIQNCEPNLKPVIGDARLTFAKEPDGAYDLIIVDAYSSDAIPI 303 EIDQSMVD ARDPK F YI +C P+LKPVIGDARLTFAKEPDGAYDLIIVDAYSSDAIPI Sbjct: 686 EIDQSMVDAARDPKNFRYISSCLPDLKPVIGDARLTFAKEPDGAYDLIIVDAYSSDAIPI 745 Query: 304 HLATEEAMAIYKEKLAPQGAVVMHVSNRHLELASVVVGIADANDMKSWVYSEDSGRDNEY 363 HLATEEAM IYK+KLAP GAVVMHVSNRHL+L +VVVGIADAND+KSWV++EDSGRD +Y Sbjct: 746 HLATEEAMKIYKDKLAPHGAVVMHVSNRHLDLETVVVGIADANDLKSWVFNEDSGRDADY 805 Query: 364 IFSTSVVVSAREEEDVGKLASSDVWTETEADEKQRVWTDDYSNVLGAVYRRLRDGE 419 IFST VV+SAREE DVGK+ASS VW +TEAD++ RVWTDDYSN+LGA+YRRLRDGE Sbjct: 806 IFSTDVVISAREEADVGKIASSKVWEQTEADDRVRVWTDDYSNILGALYRRLRDGE 861 >ref|YP_781052.1| hypothetical protein RPE_2128 [Rhodopseudomonas palustris BisA53] gb|ABJ06072.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 759 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 303/416 (72%), Positives = 345/416 (82%), Gaps = 23/416 (5%) Query: 27 RTRPAAKYLTGFYVALSFGGMVGGLFAGLIAPFTFSWVAEYPIL---------------- 70 RTRPAA +LTGFYVALSFGGMVGGLFAGL+AP+TFSW+AEYPIL Sbjct: 344 RTRPAASHLTGFYVALSFGGMVGGLFAGLLAPYTFSWIAEYPILLALAALARPTMLEPFP 403 Query: 71 -------LALAXLAVALIAPSYSAGDIFNWFDVHRVWVIGAVGVLSALLALALNANRWKI 123 L LA +A ALI P ++ G F W + +RV +IG V L+ ++AL L ANRWK+ Sbjct: 404 AISRWYWLVLAGVAAALIVPVWTGGATFAWLESNRVVMIGDVAALAVIVALGLRANRWKV 463 Query: 124 FATVVVALVVLRAYPSDDGRVETVRSFFGVHKIVVTANGQYHVLMHGTTIHGAEKFKNDD 183 AT V+A+V+LRAYP+DDGRVETVRSFFGVHKIVVT NGQYHVLMHGTTIHGA+K NDD Sbjct: 464 VATFVMAMVLLRAYPADDGRVETVRSFFGVHKIVVTPNGQYHVLMHGTTIHGAQKMLNDD 523 Query: 184 GTPVAGTPEPISYYHKDGGIGRAISAIRERKGAPLKVAVIGLGSGTLTCASAPGEDWRFF 243 G+ V G PEPISYYH DGGIG+ I+AIR RKGAPLKVAVIGLGSGTLTCA+A GEDW+FF Sbjct: 524 GSAVTGRPEPISYYHADGGIGQGIAAIRARKGAPLKVAVIGLGSGTLTCAAASGEDWKFF 583 Query: 244 EIDQSMVDTARDPKYFTYIQNCEPNLKPVIGDARLTFAKEPDGAYDLIIVDAYSSDAIPI 303 EIDQ+MVDTARDPK+FT++QNC PNL+PV+GDARLTFA EPDGAYDLIIVDAYSSDAIPI Sbjct: 584 EIDQTMVDTARDPKHFTFVQNCAPNLQPVMGDARLTFAHEPDGAYDLIIVDAYSSDAIPI 643 Query: 304 HLATEEAMAIYKEKLAPQGAVVMHVSNRHLELASVVVGIADANDMKSWVYSEDSGRDNEY 363 HLAT+EAMAIYK KL+PQG V+MHVSNR+LEL+SVVVGIA AND+KSWV++EDSGRD EY Sbjct: 644 HLATQEAMAIYKAKLSPQGTVLMHVSNRNLELSSVVVGIAGANDLKSWVFNEDSGRDAEY 703 Query: 364 IFSTSVVVSAREEEDVGKLASSDVWTETEADEKQRVWTDDYSNVLGAVYRRLRDGE 419 IFST VVVSAR E DVG+LA SD W TE + + VWTDDYSNVLGAV+RRLRDGE Sbjct: 704 IFSTQVVVSARNEADVGRLAGSDQWKLTEVADARSVWTDDYSNVLGAVWRRLRDGE 759