BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0011.p (195 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002546250.1| transcriptional regulator protein [Agrobacte... 315 2e-84 ref|YP_002281873.1| TetR family transcriptional regulator [Rhizo... 301 3e-80 ref|ZP_03530601.1| probable transcriptional regulator protein, T... 298 2e-79 gb|EGE58133.1| transcriptional regulator, TetR family [Rhizobium... 295 3e-78 ref|ZP_03503833.1| transcriptional regulator, TetR family protei... 293 9e-78 >ref|YP_002546250.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gb|ACM28317.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 195 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 151/192 (78%), Positives = 161/192 (83%) Query: 4 MISTSEKILAVAQPLIVAGGYNGFSYADISDAIGIRKASIHHHFPTKAELVSTLVDRYRQ 63 M STSEKIL AQ LIVAGGYNGFSYADIS AIGIRKASIHHHFPTK ELV+ LVDRYRQ Sbjct: 4 MTSTSEKILDTAQSLIVAGGYNGFSYADISAAIGIRKASIHHHFPTKVELVAVLVDRYRQ 63 Query: 64 QTELGLKSLQEQFASPADQLQAYVNFWQACIGDASLPFCVCAMLAGEMPMLPDEVASRVR 123 Q E GL SL+EQF SPA+QL+AY+NFWQ CI D SLPFC+CAMLAGEM MLP+EVASRVR Sbjct: 64 QAETGLNSLREQFLSPAEQLRAYLNFWQTCIRDTSLPFCICAMLAGEMQMLPEEVASRVR 123 Query: 124 AHFHHLAEWLASVLQAGAEQHLFRLDQRPHEEAQMLMASVHGAMLSARAFDDPGVFAAIV 183 AHFH LA WL SVL GAEQ LFRLD++P EEAQMLMASVHGAMLSARAF DP +F IV Sbjct: 124 AHFHSLARWLKSVLATGAEQGLFRLDKQPEEEAQMLMASVHGAMLSARAFSDPELFTTIV 183 Query: 184 KPQFARLLVADR 195 PQF RLL R Sbjct: 184 IPQFTRLLTPAR 195 >ref|YP_002281873.1| TetR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI55647.1| transcriptional regulator, TetR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 193 Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 146/190 (76%), Positives = 165/190 (86%) Query: 4 MISTSEKILAVAQPLIVAGGYNGFSYADISDAIGIRKASIHHHFPTKAELVSTLVDRYRQ 63 M STS+KIL +AQ LIVAGGYNGFSYADISDAIGIRKASIHHHFP KAELV+ LVDRY + Sbjct: 4 MPSTSDKILDIAQSLIVAGGYNGFSYADISDAIGIRKASIHHHFPAKAELVAVLVDRYTK 63 Query: 64 QTELGLKSLQEQFASPADQLQAYVNFWQACIGDASLPFCVCAMLAGEMPMLPDEVASRVR 123 Q E GL+SL+EQ ASPADQL+ Y+++W++CI +AS PFCVCAMLA EM MLPDEVASRVR Sbjct: 64 QAEAGLQSLREQAASPADQLRFYIDYWRSCIENASQPFCVCAMLASEMQMLPDEVASRVR 123 Query: 124 AHFHHLAEWLASVLQAGAEQHLFRLDQRPHEEAQMLMASVHGAMLSARAFDDPGVFAAIV 183 AHF +LA WL SVLQAG EQ LF+LD+RP E+AQMLMASVHGAMLSARAF DPG+F AIV Sbjct: 124 AHFRNLAAWLTSVLQAGVEQGLFQLDKRPEEQAQMLMASVHGAMLSARAFGDPGLFIAIV 183 Query: 184 KPQFARLLVA 193 P+ ARL VA Sbjct: 184 GPEIARLRVA 193 >ref|ZP_03530601.1| probable transcriptional regulator protein, TetR family [Rhizobium etli CIAT 894] Length = 195 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 145/190 (76%), Positives = 159/190 (83%) Query: 6 STSEKILAVAQPLIVAGGYNGFSYADISDAIGIRKASIHHHFPTKAELVSTLVDRYRQQT 65 STS+KIL +AQ LIVAGGYNGFSYADIS AIGIRKASIHHHFPTKAEL S LVDRY +Q Sbjct: 6 STSDKILDIAQSLIVAGGYNGFSYADISAAIGIRKASIHHHFPTKAELASVLVDRYVKQA 65 Query: 66 ELGLKSLQEQFASPADQLQAYVNFWQACIGDASLPFCVCAMLAGEMPMLPDEVASRVRAH 125 E GL+SL+EQ ASPADQL Y+N+W CI DAS PFCVCAMLA E+ MLPD+VASRVRAH Sbjct: 66 EAGLQSLREQAASPADQLHLYINYWHTCIRDASQPFCVCAMLASEVQMLPDDVASRVRAH 125 Query: 126 FHHLAEWLASVLQAGAEQHLFRLDQRPHEEAQMLMASVHGAMLSARAFDDPGVFAAIVKP 185 F LA WL SVLQAG EQ LFRLD+RP E+AQMLMASVHGAMLSARA DPG+F A+V P Sbjct: 126 FQGLAAWLTSVLQAGVEQGLFRLDRRPEEQAQMLMASVHGAMLSARALGDPGLFIAVVAP 185 Query: 186 QFARLLVADR 195 + ARL ADR Sbjct: 186 EIARLRAADR 195 >gb|EGE58133.1| transcriptional regulator, TetR family [Rhizobium etli CNPAF512] Length = 193 Score = 295 bits (754), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 143/190 (75%), Positives = 160/190 (84%) Query: 4 MISTSEKILAVAQPLIVAGGYNGFSYADISDAIGIRKASIHHHFPTKAELVSTLVDRYRQ 63 M STS+KIL VAQ LIVAGGYNGFSYADIS AIGIRKASIHHHFP KAELV+ LVDRY + Sbjct: 4 MASTSDKILDVAQSLIVAGGYNGFSYADISAAIGIRKASIHHHFPAKAELVAVLVDRYAR 63 Query: 64 QTELGLKSLQEQFASPADQLQAYVNFWQACIGDASLPFCVCAMLAGEMPMLPDEVASRVR 123 Q E GL+SL+EQ ASP DQLQ Y N+W++CI +A+ PFCVCAMLA EM MLPDEVASRVR Sbjct: 64 QAEAGLQSLREQAASPVDQLQFYANYWRSCIENAAQPFCVCAMLASEMQMLPDEVASRVR 123 Query: 124 AHFHHLAEWLASVLQAGAEQHLFRLDQRPHEEAQMLMASVHGAMLSARAFDDPGVFAAIV 183 AHF +LA WL SVLQAG EQ LF+LD+RP E+AQMLMASVHGAMLSARA DPG+F A+V Sbjct: 124 AHFRNLAAWLTSVLQAGVEQGLFQLDKRPEEQAQMLMASVHGAMLSARALGDPGLFIAVV 183 Query: 184 KPQFARLLVA 193 P+ ARL A Sbjct: 184 APEIARLRAA 193 >ref|ZP_03503833.1| transcriptional regulator, TetR family protein [Rhizobium etli Kim 5] Length = 190 Score = 293 bits (750), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 141/190 (74%), Positives = 160/190 (84%) Query: 4 MISTSEKILAVAQPLIVAGGYNGFSYADISDAIGIRKASIHHHFPTKAELVSTLVDRYRQ 63 M STS+KIL VAQ LIVAGGYNGFSYADIS AIGIRKASIHHHFP KAELV+ LVDRY + Sbjct: 1 MASTSDKILGVAQSLIVAGGYNGFSYADISAAIGIRKASIHHHFPAKAELVAVLVDRYTK 60 Query: 64 QTELGLKSLQEQFASPADQLQAYVNFWQACIGDASLPFCVCAMLAGEMPMLPDEVASRVR 123 Q GL+SL+EQ ASPADQLQ Y+++W++CI +AS PFC+CAMLA EM MLPDEVASRVR Sbjct: 61 QAAAGLQSLREQAASPADQLQFYIDYWRSCIENASQPFCICAMLASEMQMLPDEVASRVR 120 Query: 124 AHFHHLAEWLASVLQAGAEQHLFRLDQRPHEEAQMLMASVHGAMLSARAFDDPGVFAAIV 183 HF +LA WL SVLQAG EQ LF+LD+RP E+AQMLMASVHGAMLSARA DPG+F A+V Sbjct: 121 THFRNLAAWLTSVLQAGFEQGLFQLDRRPEEQAQMLMASVHGAMLSARALSDPGLFIAVV 180 Query: 184 KPQFARLLVA 193 P+ ARL A Sbjct: 181 GPEIARLRTA 190