BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0009.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_486006.1| hypothetical protein RPB_2390 [Rhodopseudomonas... 343 2e-92 ref|ZP_08630282.1| hypothetical protein CSIRO_3386 [Bradyrhizobi... 343 2e-92 ref|YP_001240711.1| hypothetical protein BBta_4780 [Bradyrhizobi... 342 5e-92 ref|YP_001206508.1| putative alpha/beta-hydrolases [Bradyrhizobi... 339 3e-91 ref|NP_771800.1| hypothetical protein bll5160 [Bradyrhizobium ja... 336 2e-90 >ref|YP_486006.1| hypothetical protein RPB_2390 [Rhodopseudomonas palustris HaA2] gb|ABD07095.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 277 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 165/265 (62%), Positives = 204/265 (76%), Gaps = 4/265 (1%) Query: 1 VAMAAYFTTDRWAIRHTTLTFHDVLRDDRNVTVEVAVRRDRQMQAMAEMIELPVAILSHG 60 V+ AAYFT +WAIRH TLTF D R+ R V V++AVRRD+++QA A +IELPVA+L+HG Sbjct: 14 VSAAAYFTASKWAIRHETLTFFDAARN-RPVAVDIAVRRDKELQAEAGLIELPVALLNHG 72 Query: 61 NTVKNTEYSFLTNLFASRGYLVISIQHDLDTDAPMVTKVGEEYVGRRMQYNRGVFNIMYA 120 NTV+ TEYSFL NLFA+RGY+ +SIQHDLD+DAP+VTKVGE YVGR Y RG+ NI +A Sbjct: 73 NTVRFTEYSFLANLFAARGYMAVSIQHDLDSDAPLVTKVGEPYVGRLPVYQRGIANIEFA 132 Query: 121 VDELKKLYPNANYRQLTLIGHSNGGDISMFFAKQHPDLVKKVVTLDNLRVPFITDGKIKI 180 V +L L PNA+Y LT++GHSNGGDISM++AK HPD ++KVVTLDNLRVPF+ DGK +I Sbjct: 133 VKQLAVLQPNADYEHLTMVGHSNGGDISMYYAKLHPDRIRKVVTLDNLRVPFMIDGKFRI 192 Query: 181 LSFRSRDPVFKADPGVVPDDETCARLGIKVVRTEFQHNDLSDRGPGSAKSSIQAGVEQFL 240 LSFRS+DPVFK DPGVVPD E C + GI VV T FQH D+SDRGP K+SI + ++QFL Sbjct: 193 LSFRSQDPVFKPDPGVVPDQEICDKAGITVVNTGFQHVDMSDRGPDDVKASISSALDQFL 252 Query: 241 DEDAGESTPTMPLLAASTPASASAA 265 D E P+ A P+S + A Sbjct: 253 DT---EGVRPGPVKARPAPSSGAMA 274 >ref|ZP_08630282.1| hypothetical protein CSIRO_3386 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07155.1| hypothetical protein CSIRO_3386 [Bradyrhizobiaceae bacterium SG-6C] Length = 282 Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 168/270 (62%), Positives = 205/270 (75%), Gaps = 2/270 (0%) Query: 1 VAMAAYFTTDRWAIRHTTLTFHDVLRDDRNVTVEVAVRRDRQMQAMAEMIELPVAILSHG 60 + + AYFT +WAIRH TLT +D R+ R + V +AVRRD++MQA A ++ LPVAI++HG Sbjct: 14 ILVVAYFTASKWAIRHETLTLYDAARN-REIDVAIAVRRDKEMQANAGLLTLPVAIVNHG 72 Query: 61 NTVKNTEYSFLTNLFASRGYLVISIQHDLDTDAPMVTKVGEEYVGRRMQYNRGVFNIMYA 120 NTVK TEYSFL N+ A+RGYLV SIQHDL DAP+VTKVGE YVGR Y RGV NI + Sbjct: 73 NTVKFTEYSFLANVLAARGYLVTSIQHDLAGDAPLVTKVGELYVGRLPVYQRGVANIEFV 132 Query: 121 VDELKKLYPNANYRQLTLIGHSNGGDISMFFAKQHPDLVKKVVTLDNLRVPFITDGKIKI 180 VD+++K+ PNA+Y LTL+GHSNGGDISM+FAK HPD VKKVVTLDNLRVPF+TDGK KI Sbjct: 133 VDQMEKIQPNADYDHLTLVGHSNGGDISMYFAKMHPDNVKKVVTLDNLRVPFLTDGKFKI 192 Query: 181 LSFRSRDPVFKADPGVVPDDETCARLGIKVVRTEFQHNDLSDRGPGSAKSSIQAGVEQFL 240 LSFRS+DP FKADPGVVPD+E C GI VV T FQH D+SDRGP + K+SIQ +++FL Sbjct: 193 LSFRSKDPRFKADPGVVPDNEICEESGITVVNTGFQHTDMSDRGPDNVKTSIQGVLDKFL 252 Query: 241 DEDAGESTPTMPLLAASTPAS-ASAAPPEN 269 + ++ S +A P S A APP N Sbjct: 253 ESESKLSPVETKKIAVPKPDSVAQIAPPIN 282 >ref|YP_001240711.1| hypothetical protein BBta_4780 [Bradyrhizobium sp. BTAi1] gb|ABQ36805.1| hypothetical protein BBta_4780 [Bradyrhizobium sp. BTAi1] Length = 295 Score = 342 bits (876), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 159/240 (66%), Positives = 195/240 (81%) Query: 1 VAMAAYFTTDRWAIRHTTLTFHDVLRDDRNVTVEVAVRRDRQMQAMAEMIELPVAILSHG 60 +A YFT +WAIRH T+ +D R +R V V++AVRRDR+MQA A MI+LPVA+L+HG Sbjct: 14 LATVGYFTASKWAIRHETVRLYDSSRGNRLVEVDIAVRRDREMQAEAGMIKLPVAVLNHG 73 Query: 61 NTVKNTEYSFLTNLFASRGYLVISIQHDLDTDAPMVTKVGEEYVGRRMQYNRGVFNIMYA 120 NTVK TEYSFL N+FA+RGY+ +SIQHDL TDAPMVTK GE YVGR Q RGV NI +A Sbjct: 74 NTVKFTEYSFLANVFAARGYMAVSIQHDLPTDAPMVTKAGELYVGRLPQIQRGVANIRFA 133 Query: 121 VDELKKLYPNANYRQLTLIGHSNGGDISMFFAKQHPDLVKKVVTLDNLRVPFITDGKIKI 180 V+++++L PNA+Y LT++GHS GGDISM+FAKQ+PD V+KVVTLDNLRVPF+TDG+ KI Sbjct: 134 VEQMRQLQPNADYDHLTIVGHSMGGDISMYFAKQYPDDVRKVVTLDNLRVPFVTDGRFKI 193 Query: 181 LSFRSRDPVFKADPGVVPDDETCARLGIKVVRTEFQHNDLSDRGPGSAKSSIQAGVEQFL 240 LSFRS+DPVFK DPGVVPDDE C + GI VV T+FQHND+ D GP AK SIQA +++FL Sbjct: 194 LSFRSKDPVFKPDPGVVPDDEICEKTGITVVNTDFQHNDMRDTGPDDAKQSIQAMLDKFL 253 >ref|YP_001206508.1| putative alpha/beta-hydrolases [Bradyrhizobium sp. ORS 278] emb|CAL78288.1| conserved hypothetical protein; putative alpha/beta-Hydrolases [Bradyrhizobium sp. ORS 278] Length = 295 Score = 339 bits (869), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 164/276 (59%), Positives = 205/276 (74%), Gaps = 10/276 (3%) Query: 1 VAMAAYFTTDRWAIRHTTLTFHDVLRDDRNVTVEVAVRRDRQMQAMAEMIELPVAILSHG 60 +A YFT +WAIRH T+ F+D R +R V V VA+RRD++MQA A M++LPVAIL+HG Sbjct: 14 LAAVGYFTASKWAIRHETIRFYDASRGNRLVEVAVAIRRDKEMQADAGMLKLPVAILNHG 73 Query: 61 NTVKNTEYSFLTNLFASRGYLVISIQHDLDTDAPMVTKVGEEYVGRRMQYNRGVFNIMYA 120 NTVK TEYSF+ N+FA+RGY+ +SIQHDL TD PMVTKVGE YVGR Q RGV NI +A Sbjct: 74 NTVKFTEYSFVANVFAARGYMAVSIQHDLPTDPPMVTKVGEPYVGRLPQIQRGVANIRFA 133 Query: 121 VDELKKLYPNANYRQLTLIGHSNGGDISMFFAKQHPDLVKKVVTLDNLRVPFITDGKIKI 180 V++++++ PNA+Y LT++GHS GGDISM+FAKQ+PD V+KVVTLDNLRVPF+T+GK KI Sbjct: 134 VEQMRQIQPNADYDHLTMVGHSMGGDISMYFAKQYPDDVRKVVTLDNLRVPFVTEGKFKI 193 Query: 181 LSFRSRDPVFKADPGVVPDDETCARLGIKVVRTEFQHNDLSDRGPGSAKSSIQAGVEQFL 240 LSFRS DP FK DPGV+PD+E C + GI VV+T+FQHND+ D GP AKSSIQA +++FL Sbjct: 194 LSFRSNDPQFKTDPGVIPDNEICEKEGITVVKTDFQHNDMRDTGPDEAKSSIQAMLDKFL 253 Query: 241 -----DEDAGESTPTMPLL-----AASTPASASAAP 266 D G PLL A P +A P Sbjct: 254 ADSDSSSDIGPVKAKAPLLDPGPVAPYAPTGKTATP 289 >ref|NP_771800.1| hypothetical protein bll5160 [Bradyrhizobium japonicum USDA 110] dbj|BAC50425.1| bll5160 [Bradyrhizobium japonicum USDA 110] Length = 286 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 156/245 (63%), Positives = 193/245 (78%) Query: 5 AYFTTDRWAIRHTTLTFHDVLRDDRNVTVEVAVRRDRQMQAMAEMIELPVAILSHGNTVK 64 AYFT +WAIRH T+TF+D RD+R V V++A+RRD++MQA A MI +PVA+++HGNTVK Sbjct: 18 AYFTASKWAIRHETITFYDASRDNRPVPVDIAIRRDKEMQANAGMITMPVAVINHGNTVK 77 Query: 65 NTEYSFLTNLFASRGYLVISIQHDLDTDAPMVTKVGEEYVGRRMQYNRGVFNIMYAVDEL 124 NTEY FL N+FA+RGYLV+S QHDL TD PMVTK GE YVGR Q RGV NI A+ E+ Sbjct: 78 NTEYGFLANIFAARGYLVVSPQHDLPTDPPMVTKPGELYVGRLPQILRGVANIHLAMQEM 137 Query: 125 KKLYPNANYRQLTLIGHSNGGDISMFFAKQHPDLVKKVVTLDNLRVPFITDGKIKILSFR 184 KK+ PNA+Y ++T++GHS GGDI+M+FAKQ+PD VKKVVTLDNLRVPF+T GK KILSFR Sbjct: 138 KKVQPNADYEKVTMVGHSMGGDITMYFAKQYPDEVKKVVTLDNLRVPFVTAGKFKILSFR 197 Query: 185 SRDPVFKADPGVVPDDETCARLGIKVVRTEFQHNDLSDRGPGSAKSSIQAGVEQFLDEDA 244 S DP FK D GV+P DE C + GI+VV+TEFQHND+ D GP AK+SIQ +++FL Sbjct: 198 STDPQFKTDAGVIPSDEECEKAGIQVVKTEFQHNDMRDTGPDVAKNSIQGMLDKFLSATD 257 Query: 245 GESTP 249 E P Sbjct: 258 SEVGP 262