BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0008.p (263 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773222.1| hypothetical protein blr6582 [Bradyrhizobium ja... 344 6e-93 ref|YP_001241983.1| hypothetical protein BBta_6152 [Bradyrhizobi... 341 8e-92 ref|YP_001207519.1| ErfK/YbiS/YcfS/YnhG family protein [Bradyrhi... 332 4e-89 ref|YP_533147.1| hypothetical protein RPC_3286 [Rhodopseudomonas... 329 2e-88 ref|YP_577982.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X... 320 1e-85 >ref|NP_773222.1| hypothetical protein blr6582 [Bradyrhizobium japonicum USDA 110] dbj|BAC51847.1| blr6582 [Bradyrhizobium japonicum USDA 110] Length = 272 Score = 344 bits (883), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 194/261 (74%), Positives = 211/261 (80%), Gaps = 9/261 (3%) Query: 1 MRSFLIALTSVMLFTAGAAQAKVDITIDKDNQQMTVAVDGVARYHWPVSTGIPSRETPNG 60 MRSF I TS++L +AG AQAKV+ITIDKDNQQMTVAVDGVARYHWPVSTGIPSRETPNG Sbjct: 14 MRSFFITFTSLLLLSAGTAQAKVEITIDKDNQQMTVAVDGVARYHWPVSTGIPSRETPNG 73 Query: 61 SFRAFRMEEDHYSKEFDDAPMPHSIFFTKIGHAIHGTDSVNRLGSPASHGCVRLSRDNAT 120 +FR FRMEEDHYSKEFDDAPMPH+IFFTK+GHAIHGTDSV RLG+PASHGCVRLSR NA+ Sbjct: 74 AFRTFRMEEDHYSKEFDDAPMPHAIFFTKVGHAIHGTDSVGRLGTPASHGCVRLSRQNAS 133 Query: 121 TLYALVQKEGVLNTTVTLTGSSQVALARNPRGRNGTAVARRAPQQDEQYGTAAAGDPVVL 180 TLYALVQ++GVLNTTVTLTGS+QVALARNPRGR AVAR +EQY T +GDPV L Sbjct: 134 TLYALVQQQGVLNTTVTLTGSAQVALARNPRGRTNNAVARAPQPAEEQYAT--SGDPVNL 191 Query: 181 TP--QP-RDYPAQARADDGYIYPADGSSTDRRYPAP-PSSRRVYDAQAYGQQQQYYGNQG 236 TP QP R Y Q DD YIYPADGS T RYPAP P+SR +YDAQ Y QQ Q Y NQG Sbjct: 192 TPPAQPARRYMPQ---DDNYIYPADGSDTGARYPAPRPASRPLYDAQVYQQQPQQYYNQG 248 Query: 237 YAPAPQGYYQPRPAYQPRGFY 257 Y QPR YQPRG+Y Sbjct: 249 YGQQGYYQPQPRQYYQPRGYY 269 >ref|YP_001241983.1| hypothetical protein BBta_6152 [Bradyrhizobium sp. BTAi1] gb|ABQ38077.1| hypothetical protein BBta_6152 [Bradyrhizobium sp. BTAi1] Length = 264 Score = 341 bits (874), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 187/273 (68%), Positives = 207/273 (75%), Gaps = 19/273 (6%) Query: 1 MRSFLIALTSVMLFTAGAAQAKVDITIDKDNQQMTVAVDGVARYHWPVSTGIPSRETPNG 60 MR+ L A+ +A A AK+DIT+DK+NQ MTVAVDGV RY WPVSTGIPSRETPNG Sbjct: 1 MRTTLFAIAGFAFLSATPALAKIDITVDKNNQIMTVAVDGVERYRWPVSTGIPSRETPNG 60 Query: 61 SFRAFRMEEDHYSKEFDDAPMPHSIFFTKIGHAIHGTDSVNRLGSPASHGCVRLSRDNAT 120 +FRAFRME DH+SKEFDDAPMPHSIFFTK+GHAIHGTDS RLG+PASHGCVRLS+ NAT Sbjct: 61 TFRAFRMEADHFSKEFDDAPMPHSIFFTKVGHAIHGTDSEGRLGTPASHGCVRLSKANAT 120 Query: 121 TLYALVQKEGVLNTTVTLTGSSQVALARNPRGRNGTAVARR-APQQDEQYGTAAAGDPVV 179 TLY LVQK+GVLNTTVTLTGS++VALARNP R GTAVARR APQQ + G+PVV Sbjct: 121 TLYDLVQKDGVLNTTVTLTGSAEVALARNP--RRGTAVARREAPQQYDD-----NGEPVV 173 Query: 180 LTPQPRDYPA-----QARADDGYIYPADGSSTDRRYPAPP-SSRRVYDAQAYGQQQQ--- 230 LTPQP+ P Q R DDGYIYPADGS RYPAP +SRRVYDAQAY QQ Sbjct: 174 LTPQPQLLPGRPIAPQQRPDDGYIYPADGSDNGVRYPAPRGTSRRVYDAQAYPSQQDPSY 233 Query: 231 YYGNQGYAPAPQGYYQPRPAYQPRGFYGNTYQD 263 YY N + A YYQPR YQPR +Y TYQD Sbjct: 234 YYDNSNPSYAQPRYYQPRSYYQPRSYY--TYQD 264 >ref|YP_001207519.1| ErfK/YbiS/YcfS/YnhG family protein [Bradyrhizobium sp. ORS 278] emb|CAL79302.1| conserved hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein [Bradyrhizobium sp. ORS 278] Length = 268 Score = 332 bits (850), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 187/280 (66%), Positives = 207/280 (73%), Gaps = 29/280 (10%) Query: 1 MRSFLIALTSVMLFTAGAAQAKVDITIDKDNQQMTVAVDGVARYHWPVSTGIPSRETPNG 60 MR+ L A+ L A A AK+DIT+DK+NQ MTVAVDGV RY WPVSTGIPSRETPNG Sbjct: 1 MRTSLFAVAGFALLFATPALAKIDITVDKNNQIMTVAVDGVERYRWPVSTGIPSRETPNG 60 Query: 61 SFRAFRMEEDHYSKEFDDAPMPHSIFFTKIGHAIHGTDSVNRLGSPASHGCVRLSRDNAT 120 +FRAFRME DH+SKEFDDAPMPHSIFFTK+GHAIHGTDS RLG+PASHGCVRLS+ NAT Sbjct: 61 TFRAFRMEADHFSKEFDDAPMPHSIFFTKVGHAIHGTDSEGRLGTPASHGCVRLSKANAT 120 Query: 121 TLYALVQKEGVLNTTVTLTGSSQVALARNPRGRNGTAVARR--APQQDEQYGTAAAGDPV 178 TLY LVQK+GVLNTTVTLTGS++VALARNP R GTAVARR PQ D G+PV Sbjct: 121 TLYDLVQKDGVLNTTVTLTGSAEVALARNP--RRGTAVARRDVQPQYDSN------GEPV 172 Query: 179 VLTPQPRDYPA-----QARADDGYIYPADGSSTDRRYPAP-PSSRRVYDAQAYGQQQQY- 231 VLTPQP+ P Q RADDGYIYPADGS RYPAP +SR+VY AQ YG Q Sbjct: 173 VLTPQPQLLPGRQVLPQQRADDGYIYPADGSDNGARYPAPRGTSRQVYGAQTYGAQAYPQ 232 Query: 232 --------YGNQGYAPAPQGYYQPRPAYQPRGFYGNTYQD 263 Y N YA P+ YYQPR +YQPRG+Y TYQD Sbjct: 233 QQPQYSYDYDNPSYA-QPR-YYQPRQSYQPRGYY--TYQD 268 >ref|YP_533147.1| hypothetical protein RPC_3286 [Rhodopseudomonas palustris BisB18] gb|ABD88828.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] Length = 251 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 180/263 (68%), Positives = 198/263 (75%), Gaps = 20/263 (7%) Query: 1 MRSFLIALTSVMLFTAGAA--QAKVDITIDKDNQQMTVAVDGVARYHWPVSTGIPSRETP 58 MR +L+AL+++M+ G++ QAKV I +DKD QQMTVAVDGV RY WPVSTG PS ETP Sbjct: 1 MRWYLVALSALMILLGGSSLVQAKVAIAVDKDAQQMTVAVDGVERYRWPVSTGNPSHETP 60 Query: 59 NGSFRAFRMEEDHYSKEFDDAPMPHSIFFTKIGHAIHGTDSVNRLGSPASHGCVRLSRDN 118 NGSFRAFRMEEDHYSKEFDDAPMPHSIFFTK+GHAIHGTDSV RLG+PASHGCVRLSR N Sbjct: 61 NGSFRAFRMEEDHYSKEFDDAPMPHSIFFTKVGHAIHGTDSVGRLGTPASHGCVRLSRAN 120 Query: 119 ATTLYALVQKEGVLNTTVTLTGSSQVALARNPRGRNGTAVARRAPQQDEQYGTAAAGDPV 178 A+TLYALVQ EGVLNTTV+LTGS+QVALARNP+ + TAVARRAP D G PV Sbjct: 121 ASTLYALVQSEGVLNTTVSLTGSAQVALARNPKPKANTAVARRAPDYD------GVGAPV 174 Query: 179 VLTPQ--PRDYPAQARADDGYIYPADGSSTDRRYPAPPSSRRVYDAQAYGQ-QQQYYGNQ 235 L PQ PR Q ADDGYI PADGSS RYPAP RR DAQA Q Q QYYG + Sbjct: 175 ELAPQPAPRRIVPQV-ADDGYITPADGSSDQARYPAPRGYRRYDDAQAAPQPQTQYYGAR 233 Query: 236 GYAPAPQGYYQPRPAYQPRGFYG 258 YA PR YQPRG+YG Sbjct: 234 VYA--------PRQYYQPRGYYG 248 >ref|YP_577982.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] gb|ABE63522.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] Length = 269 Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 176/267 (65%), Positives = 200/267 (74%), Gaps = 13/267 (4%) Query: 1 MRSFLIALTSVMLFTAGA-AQAKVDITIDKDNQQMTVAVDGVARYHWPVSTGIPSRETPN 59 MR+F I + S+M F AG+ A+AKV I +DKDNQQMTV+VDG RY WPVSTG PS ETPN Sbjct: 1 MRTFFIPIISLMFFAAGSMAEAKVSILVDKDNQQMTVSVDGAERYQWPVSTGNPSHETPN 60 Query: 60 GSFRAFRMEEDHYSKEFDDAPMPHSIFFTKIGHAIHGTDSVNRLGSPASHGCVRLSRDNA 119 G F+ FRME +H+SKEFDDAPMPHSIFFTK+GHAIHGT S LG P SHGCVRLSR +A Sbjct: 61 GKFQTFRMEANHFSKEFDDAPMPHSIFFTKVGHAIHGTFSEGSLGVPVSHGCVRLSRAHA 120 Query: 120 TTLYALVQKEGVLNTTVTLTGSSQVALARNPRGRNGTAVARRAPQQDEQ-YGTAAAGDPV 178 +TLYALVQKEGVLNTTVTLTGSS+VALARNPRG+ T VARR P Q Y T AG+PV Sbjct: 121 STLYALVQKEGVLNTTVTLTGSSRVALARNPRGKRKTDVARRDPAPGYQSYDT--AGNPV 178 Query: 179 VLTP---QPRDYP-AQARADDGYIYPADGSSTDRRYPAPPSSRRVYDAQAYGQQQQYYGN 234 LTP P P A R DDGYIYPADGSS+D+RYPAP S RR+Y AQ Q++ Y+ + Sbjct: 179 DLTPGHIAPAQQPQATVRGDDGYIYPADGSSSDQRYPAPRSYRRIYGAQTVPQRRPYHSD 238 Query: 235 Q---GYA-PAPQGYYQPRPAYQPRGFY 257 Q GYA P Y PRP YQPRG + Sbjct: 239 QADYGYAQPYQPQVYAPRP-YQPRGLF 264