BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0006.p (253 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01045678.1| ABC transporter, inner membrane subunit [Nitr... 454 e-126 ref|YP_577980.1| hypothetical protein Nham_2741 [Nitrobacter ham... 454 e-126 ref|NP_773219.1| ABC transporter permease protein [Bradyrhizobiu... 453 e-125 ref|YP_318968.1| ABC transporter, inner membrane subunit [Nitrob... 450 e-125 ref|YP_001241981.1| putative ABC-2 type transporter permease [Br... 449 e-124 >ref|ZP_01045678.1| ABC transporter, inner membrane subunit [Nitrobacter sp. Nb-311A] gb|EAQ36446.1| ABC transporter, inner membrane subunit [Nitrobacter sp. Nb-311A] Length = 253 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 220/253 (86%), Positives = 243/253 (96%) Query: 1 MNYRAIRAIYLFEMARTWRTLLQSIVSPVVSTSLYFVVFGAAIGSRITEVEGVSYGTFIV 60 MN+ A++AIY FEMARTWRTLLQSIVSPVVSTSLYFVVFGAAIGSRITEVEG+SYGTFIV Sbjct: 1 MNFGAVQAIYKFEMARTWRTLLQSIVSPVVSTSLYFVVFGAAIGSRITEVEGISYGTFIV 60 Query: 61 PGLVMLSVLTQSISNASFGIYFPKFVGTVYEILSAPISYFEIVIGYVGAAATKSIILGLI 120 PGL+MLSVLTQSI+NASFGIYFPKF+GT+YEILSAP+SYFEIV+GYVGAAATKSIILGLI Sbjct: 61 PGLIMLSVLTQSITNASFGIYFPKFIGTIYEILSAPVSYFEIVLGYVGAAATKSIILGLI 120 Query: 121 ILATAGLFVPLHIQHPVWMLTFLVLTAVTFSLFGFIIGIWADGFEKLQMIPMLVVTPLTF 180 ILATAGLFVPLHI HP+WMLTFL+LT+VTFSLFGFIIGIWADGFEKLQMIPML++TPLTF Sbjct: 121 ILATAGLFVPLHIHHPIWMLTFLLLTSVTFSLFGFIIGIWADGFEKLQMIPMLIITPLTF 180 Query: 181 LGGSFYSVNMLPSGWRTITLLNPVVYLISGFRWSFYEIADVSVPLSLGMTVGFLVACMAI 240 LGGSFYS+NMLP W+T+ L NPVVYLISGFRWSFYEIADVSV +S+GMTVGFL ACM + Sbjct: 181 LGGSFYSINMLPQTWQTLALFNPVVYLISGFRWSFYEIADVSVSVSIGMTVGFLAACMLV 240 Query: 241 VAWIFRTGYRLKN 253 V+WIFR+GYRLKN Sbjct: 241 VSWIFRSGYRLKN 253 >ref|YP_577980.1| hypothetical protein Nham_2741 [Nitrobacter hamburgensis X14] gb|ABE63520.1| ABC-2 protein [Nitrobacter hamburgensis X14] Length = 253 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 222/253 (87%), Positives = 243/253 (96%) Query: 1 MNYRAIRAIYLFEMARTWRTLLQSIVSPVVSTSLYFVVFGAAIGSRITEVEGVSYGTFIV 60 MN+ A++AIYLFEMARTWRTLLQSIVSPVVSTSLYFVVFGAAIGSRIT+VEGVSYGTFIV Sbjct: 1 MNFEAVKAIYLFEMARTWRTLLQSIVSPVVSTSLYFVVFGAAIGSRITQVEGVSYGTFIV 60 Query: 61 PGLVMLSVLTQSISNASFGIYFPKFVGTVYEILSAPISYFEIVIGYVGAAATKSIILGLI 120 PGLVMLSVLTQSI+NASFGIYFPKF+GT+YEILSAP+SYFEIV+GYVGAAATKSIILGLI Sbjct: 61 PGLVMLSVLTQSITNASFGIYFPKFIGTIYEILSAPVSYFEIVLGYVGAAATKSIILGLI 120 Query: 121 ILATAGLFVPLHIQHPVWMLTFLVLTAVTFSLFGFIIGIWADGFEKLQMIPMLVVTPLTF 180 ILATAGLFVPLHIQHPVWML FLV+TAVTFSLFGFI+GIWADGFEKLQMIP+L++TPLTF Sbjct: 121 ILATAGLFVPLHIQHPVWMLAFLVMTAVTFSLFGFIVGIWADGFEKLQMIPLLIITPLTF 180 Query: 181 LGGSFYSVNMLPSGWRTITLLNPVVYLISGFRWSFYEIADVSVPLSLGMTVGFLVACMAI 240 LGGSFYS++MLP GW+TI L NPVVYLISGFRWSFYEIADVSV +S+GMT+GFL CM + Sbjct: 181 LGGSFYSISMLPPGWQTIALFNPVVYLISGFRWSFYEIADVSVSVSIGMTLGFLAICMLL 240 Query: 241 VAWIFRTGYRLKN 253 V WIFRTGYRLKN Sbjct: 241 VWWIFRTGYRLKN 253 >ref|NP_773219.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51844.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 253 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 225/253 (88%), Positives = 239/253 (94%) Query: 1 MNYRAIRAIYLFEMARTWRTLLQSIVSPVVSTSLYFVVFGAAIGSRITEVEGVSYGTFIV 60 MN+RAIRAIYLFEMARTWRTLLQSIVSPVVSTSLYFVVFGAAIGSRI++VEGVSYGTFIV Sbjct: 1 MNHRAIRAIYLFEMARTWRTLLQSIVSPVVSTSLYFVVFGAAIGSRISQVEGVSYGTFIV 60 Query: 61 PGLVMLSVLTQSISNASFGIYFPKFVGTVYEILSAPISYFEIVIGYVGAAATKSIILGLI 120 PGL+MLSVLTQSI+NASFGIYFPKF GT+YEILSAPISYFEIV+GYVGAAATKSIILGLI Sbjct: 61 PGLIMLSVLTQSIANASFGIYFPKFTGTIYEILSAPISYFEIVLGYVGAAATKSIILGLI 120 Query: 121 ILATAGLFVPLHIQHPVWMLTFLVLTAVTFSLFGFIIGIWADGFEKLQMIPMLVVTPLTF 180 ILATAGLFVPLHI HPVWML FLVLTAVTFSLFGFIIGIWADGFEKLQMIPMLVVTPLTF Sbjct: 121 ILATAGLFVPLHIHHPVWMLAFLVLTAVTFSLFGFIIGIWADGFEKLQMIPMLVVTPLTF 180 Query: 181 LGGSFYSVNMLPSGWRTITLLNPVVYLISGFRWSFYEIADVSVPLSLGMTVGFLVACMAI 240 LGGSFYS++MLP WRT+ LLNPVVYLISGFRWSFYEIADVSV +S+ MT FLV C+ Sbjct: 181 LGGSFYSIDMLPPTWRTVALLNPVVYLISGFRWSFYEIADVSVAVSICMTTAFLVICLVA 240 Query: 241 VAWIFRTGYRLKN 253 + WIFRTGYRLKN Sbjct: 241 IWWIFRTGYRLKN 253 >ref|YP_318968.1| ABC transporter, inner membrane subunit [Nitrobacter winogradskyi Nb-255] gb|ABA05616.1| ABC transporter, inner membrane subunit [Nitrobacter winogradskyi Nb-255] Length = 253 Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust. Identities = 220/253 (86%), Positives = 241/253 (95%) Query: 1 MNYRAIRAIYLFEMARTWRTLLQSIVSPVVSTSLYFVVFGAAIGSRITEVEGVSYGTFIV 60 MN+ A++AIY FEMARTWRTLLQSIVSPVVSTSLYFVVFGAAIGSRITEVEGVSYGTFIV Sbjct: 1 MNFGAVQAIYKFEMARTWRTLLQSIVSPVVSTSLYFVVFGAAIGSRITEVEGVSYGTFIV 60 Query: 61 PGLVMLSVLTQSISNASFGIYFPKFVGTVYEILSAPISYFEIVIGYVGAAATKSIILGLI 120 PGL+MLSVLTQSI+NASFGIYFPKF+GT+YEILSAP+SYFEI++GYVGAAATKSIILGLI Sbjct: 61 PGLIMLSVLTQSITNASFGIYFPKFIGTIYEILSAPVSYFEIIMGYVGAAATKSIILGLI 120 Query: 121 ILATAGLFVPLHIQHPVWMLTFLVLTAVTFSLFGFIIGIWADGFEKLQMIPMLVVTPLTF 180 ILATAGLFVPLHI HP+WMLTFLVLT+VTFSLFGFIIGIWADGFEKLQMIPML++TPLTF Sbjct: 121 ILATAGLFVPLHIHHPIWMLTFLVLTSVTFSLFGFIIGIWADGFEKLQMIPMLIITPLTF 180 Query: 181 LGGSFYSVNMLPSGWRTITLLNPVVYLISGFRWSFYEIADVSVPLSLGMTVGFLVACMAI 240 LGGSFYS+NMLP W+T L NPVVYLISGFRWSFYEIADVS+ +S+GMTVGFLV CM + Sbjct: 181 LGGSFYSINMLPPAWQTAALFNPVVYLISGFRWSFYEIADVSLSVSIGMTVGFLVVCMLV 240 Query: 241 VAWIFRTGYRLKN 253 V WIFRTGYRL+N Sbjct: 241 VWWIFRTGYRLRN 253 >ref|YP_001241981.1| putative ABC-2 type transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ38075.1| putative ABC-2 type transporter (permease protein) [Bradyrhizobium sp. BTAi1] Length = 253 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 223/253 (88%), Positives = 241/253 (95%) Query: 1 MNYRAIRAIYLFEMARTWRTLLQSIVSPVVSTSLYFVVFGAAIGSRITEVEGVSYGTFIV 60 MN RA+ AIY FEMARTWRT+LQSIVSPVVSTSLYFVVFGAAIGSRI+EV+GVSYGTFIV Sbjct: 1 MNLRAVGAIYKFEMARTWRTILQSIVSPVVSTSLYFVVFGAAIGSRISEVQGVSYGTFIV 60 Query: 61 PGLVMLSVLTQSISNASFGIYFPKFVGTVYEILSAPISYFEIVIGYVGAAATKSIILGLI 120 PGLVMLSVLTQSI+NASFGIYFPKF+GT+YEILSAPIS+FEIV+GYVGAAATKSI+LGLI Sbjct: 61 PGLVMLSVLTQSIANASFGIYFPKFIGTIYEILSAPISHFEIVLGYVGAAATKSIVLGLI 120 Query: 121 ILATAGLFVPLHIQHPVWMLTFLVLTAVTFSLFGFIIGIWADGFEKLQMIPMLVVTPLTF 180 ILATAGLFVPLHIQHPVWMLTFLVLTA+TFSLFGFIIGIWADGFEKLQMIPMLVVTPLTF Sbjct: 121 ILATAGLFVPLHIQHPVWMLTFLVLTAITFSLFGFIIGIWADGFEKLQMIPMLVVTPLTF 180 Query: 181 LGGSFYSVNMLPSGWRTITLLNPVVYLISGFRWSFYEIADVSVPLSLGMTVGFLVACMAI 240 LGGSFYSVNMLP W TI LLNPVVYLISGFRWSFYEIADV V +S+ MT+GFLV CM+I Sbjct: 181 LGGSFYSVNMLPPTWHTIALLNPVVYLISGFRWSFYEIADVRVEISVAMTLGFLVICMSI 240 Query: 241 VAWIFRTGYRLKN 253 + WIF+TGYRLK+ Sbjct: 241 IWWIFKTGYRLKH 253