BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0005.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773218.1| ABC transporter ATP-binding protein [Bradyrhizo... 461 e-128 ref|YP_577979.1| ABC transporter related [Nitrobacter hamburgens... 435 e-120 ref|YP_001241980.1| putative ABC transporter ATP binding protein... 434 e-120 ref|YP_318967.1| ABC transporter, ATPase subunit [Nitrobacter wi... 433 e-119 ref|YP_001207516.1| putative ABC transporter ATP binding protein... 431 e-119 >ref|NP_773218.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51843.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110] Length = 307 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/305 (76%), Positives = 248/305 (81%), Gaps = 36/305 (11%) Query: 1 MSPIISVSNLSKTYGSGFKALKGINLDIVKGEIFALLGPN-------------------- 40 MS IISV+NLSKTYGSGFKALK +NLDI +GEIFALLGPN Sbjct: 1 MSSIISVANLSKTYGSGFKALKNVNLDIKRGEIFALLGPNGAGKTTLISIICGIANPSEG 60 Query: 41 ----------------XSMIGLVPQELHTDAFESVWATVSFSRGLFGKPKNPAHIEKVLR 84 S+IGLVPQELHTDAFESVWATVSFSRGLFGKPKNPAHIEKVL+ Sbjct: 61 RVLVGGEDIQTSYRKARSLIGLVPQELHTDAFESVWATVSFSRGLFGKPKNPAHIEKVLK 120 Query: 85 DLSLWDKKDDKIITLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRKGMWEVVRTL 144 DLSLWDKKD KIITLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRKGMWEVVRTL Sbjct: 121 DLSLWDKKDSKIITLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRKGMWEVVRTL 180 Query: 145 QASGVTIILTTHYIEEAEEMADRIGVINKGEIILIEDKATLMQKLGKKELTLQLQNKLEA 204 Q SGVTIILTTHYIEEAEEMADRIGVINKGEI+L+EDKATLMQKLGKK LTL LQNK+ A Sbjct: 181 QQSGVTIILTTHYIEEAEEMADRIGVINKGEIVLVEDKATLMQKLGKKRLTLHLQNKISA 240 Query: 205 IPDVLSAYNLELSDDGRTVTYDYDTKGDRTGITSLLNDLRNAGIRISDLDTKQSSLEDIF 264 +P+ L Y L+L D G T+ YDYDTKG+RTGITSLL+DLR AGIR +DLDT QSSLEDIF Sbjct: 241 LPESLGHYELDLCDSGATLVYDYDTKGERTGITSLLSDLRTAGIRFNDLDTTQSSLEDIF 300 Query: 265 VSLVR 269 V LVR Sbjct: 301 VDLVR 305 >ref|YP_577979.1| ABC transporter related [Nitrobacter hamburgensis X14] gb|ABE63519.1| ABC transporter related protein [Nitrobacter hamburgensis X14] Length = 306 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 221/306 (72%), Positives = 241/306 (78%), Gaps = 36/306 (11%) Query: 1 MSPIISVSNLSKTYGSGFKALKGINLDIVKGEIFALLGPN-------------------- 40 MSPIISVS LSKTY SGF ALK INLDI +GEIFALLGPN Sbjct: 1 MSPIISVSGLSKTYASGFTALKAINLDINRGEIFALLGPNGAGKTTLISIICGIANPSAG 60 Query: 41 ----------------XSMIGLVPQELHTDAFESVWATVSFSRGLFGKPKNPAHIEKVLR 84 S+IGLVPQELHTDAFE+VWATVSFSRGLFGK KNP HIEKVL+ Sbjct: 61 QVLVDGHDIQRDFRATRSLIGLVPQELHTDAFETVWATVSFSRGLFGKRKNPTHIEKVLK 120 Query: 85 DLSLWDKKDDKIITLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRKGMWEVVRTL 144 DLSLWDKKD+KI+TLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRK MW+VVRTL Sbjct: 121 DLSLWDKKDNKIVTLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRKAMWDVVRTL 180 Query: 145 QASGVTIILTTHYIEEAEEMADRIGVINKGEIILIEDKATLMQKLGKKELTLQLQNKLEA 204 +ASGVTIILTTHYIEEAEEMADR+GVIN+GEIIL+E+K LMQKLGKK L L LQ +L+A Sbjct: 181 RASGVTIILTTHYIEEAEEMADRVGVINRGEIILVEEKTVLMQKLGKKRLKLHLQGRLDA 240 Query: 205 IPDVLSAYNLELSDDGRTVTYDYDTKGDRTGITSLLNDLRNAGIRISDLDTKQSSLEDIF 264 +P L+AYNLEL+D G + Y YDT+ TGITSLL +LR AGIR SDLDT QSSLEDIF Sbjct: 241 VPAPLAAYNLELADCGTELIYTYDTRSQHTGITSLLGELRAAGIRFSDLDTTQSSLEDIF 300 Query: 265 VSLVRA 270 VSLVRA Sbjct: 301 VSLVRA 306 >ref|YP_001241980.1| putative ABC transporter ATP binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ38074.1| putative ABC transporter (ATP binding protein) [Bradyrhizobium sp. BTAi1] Length = 306 Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust. Identities = 216/305 (70%), Positives = 245/305 (80%), Gaps = 36/305 (11%) Query: 1 MSPIISVSNLSKTYGSGFKALKGINLDIVKGEIFALLGPN-------------------- 40 M+P+ISVS LSKTY SGF +L I+L+I +GEIFALLGPN Sbjct: 1 MAPVISVSGLSKTYASGFTSLNNIHLEIARGEIFALLGPNGAGKTTLISIICGIVNASSG 60 Query: 41 ----------------XSMIGLVPQELHTDAFESVWATVSFSRGLFGKPKNPAHIEKVLR 84 ++IGLVPQELHTD+FESVWATVSFSRGLFGKPKNPA IEK+L+ Sbjct: 61 QVAVGGHDINADYRAARALIGLVPQELHTDSFESVWATVSFSRGLFGKPKNPALIEKILK 120 Query: 85 DLSLWDKKDDKIITLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRKGMWEVVRTL 144 DLSLWDKKD KIITLSGGMKRRVMIAKALSHEPQ+LFLDEPTAGVDVELRKGMW+VVR L Sbjct: 121 DLSLWDKKDAKIITLSGGMKRRVMIAKALSHEPQVLFLDEPTAGVDVELRKGMWDVVREL 180 Query: 145 QASGVTIILTTHYIEEAEEMADRIGVINKGEIILIEDKATLMQKLGKKELTLQLQNKLEA 204 +A+GVTIILTTHYIEEAEEMADR+GVINKGEI+L+EDKA LMQKLG+K L+L LQ +++A Sbjct: 181 KAAGVTIILTTHYIEEAEEMADRVGVINKGEIVLVEDKAKLMQKLGRKRLSLHLQQRIDA 240 Query: 205 IPDVLSAYNLELSDDGRTVTYDYDTKGDRTGITSLLNDLRNAGIRISDLDTKQSSLEDIF 264 IP+ L+ Y+L LS+DG + YDYDTKGDRTGITSLL DLR AGIR DL+TKQSSLEDIF Sbjct: 241 IPEALAPYHLTLSEDGWRLAYDYDTKGDRTGITSLLGDLRAAGIRFVDLETKQSSLEDIF 300 Query: 265 VSLVR 269 VSLVR Sbjct: 301 VSLVR 305 >ref|YP_318967.1| ABC transporter, ATPase subunit [Nitrobacter winogradskyi Nb-255] gb|ABA05615.1| ABC transporter, ATPase subunit [Nitrobacter winogradskyi Nb-255] Length = 306 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 218/305 (71%), Positives = 239/305 (78%), Gaps = 36/305 (11%) Query: 1 MSPIISVSNLSKTYGSGFKALKGINLDIVKGEIFALLGPN-------------------- 40 MS +IS+S LSK Y SGF ALK I+LDI +GEIFALLGPN Sbjct: 1 MSSMISISGLSKAYASGFMALKSIDLDIKRGEIFALLGPNGAGKTTLISIICGITNPSAG 60 Query: 41 ----------------XSMIGLVPQELHTDAFESVWATVSFSRGLFGKPKNPAHIEKVLR 84 +MIGLVPQELHTDAFE+VWATVSFSRGLFGKP+NP HIEKVL+ Sbjct: 61 QVLVDGRDIRRDYRATRAMIGLVPQELHTDAFETVWATVSFSRGLFGKPRNPTHIEKVLK 120 Query: 85 DLSLWDKKDDKIITLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRKGMWEVVRTL 144 DLSLWDKKD KI+TLSGGMKRRVMIAKALSHEPQ+LFLDEPTAGVDVELRK MW VVRTL Sbjct: 121 DLSLWDKKDSKIVTLSGGMKRRVMIAKALSHEPQVLFLDEPTAGVDVELRKAMWGVVRTL 180 Query: 145 QASGVTIILTTHYIEEAEEMADRIGVINKGEIILIEDKATLMQKLGKKELTLQLQNKLEA 204 +ASGVTIILTTHYIEEAEEMADR+GVINKGEIIL+++K LMQKLGKK L L LQ K+EA Sbjct: 181 RASGVTIILTTHYIEEAEEMADRVGVINKGEIILVDEKTALMQKLGKKRLKLHLQGKVEA 240 Query: 205 IPDVLSAYNLELSDDGRTVTYDYDTKGDRTGITSLLNDLRNAGIRISDLDTKQSSLEDIF 264 IP L+AYNLEL+ DGR V Y YDT+ + TGITSLL DLR AGIR SDLDT QSSLE+IF Sbjct: 241 IPATLAAYNLELAADGRQVIYTYDTRSEHTGITSLLGDLRAAGIRFSDLDTTQSSLEEIF 300 Query: 265 VSLVR 269 VSLVR Sbjct: 301 VSLVR 305 >ref|YP_001207516.1| putative ABC transporter ATP binding protein [Bradyrhizobium sp. ORS 278] emb|CAL79299.1| putative ABC transporter (ATP binding protein) [Bradyrhizobium sp. ORS 278] Length = 306 Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust. Identities = 216/304 (71%), Positives = 245/304 (80%), Gaps = 36/304 (11%) Query: 1 MSPIISVSNLSKTYGSGFKALKGINLDIVKGEIFALLGPN-------------------- 40 M+P+ISVS LSKTY SGF +L INL I +GEIFALLGPN Sbjct: 1 MAPVISVSGLSKTYPSGFTSLNNINLSIERGEIFALLGPNGAGKTTLISIICGIVNASTG 60 Query: 41 ----------------XSMIGLVPQELHTDAFESVWATVSFSRGLFGKPKNPAHIEKVLR 84 S+IGLVPQELHTD+FESVWATVSFSRGLFGKP+NPA IEK+L+ Sbjct: 61 KVAVGGHDINDGYRAARSLIGLVPQELHTDSFESVWATVSFSRGLFGKPRNPALIEKILK 120 Query: 85 DLSLWDKKDDKIITLSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRKGMWEVVRTL 144 DLSLWDKKD KIITLSGGMKRRVMIAKALSHEPQ+LFLDEPTAGVDVELRKGMW+VVR L Sbjct: 121 DLSLWDKKDAKIITLSGGMKRRVMIAKALSHEPQVLFLDEPTAGVDVELRKGMWDVVREL 180 Query: 145 QASGVTIILTTHYIEEAEEMADRIGVINKGEIILIEDKATLMQKLGKKELTLQLQNKLEA 204 +A+GVTIILTTHYIEEAEEMADR+GVINKGEI+L+EDKA LMQKLG+K L+LQLQ+++++ Sbjct: 181 KAAGVTIILTTHYIEEAEEMADRVGVINKGEIVLVEDKAKLMQKLGRKRLSLQLQHRIDS 240 Query: 205 IPDVLSAYNLELSDDGRTVTYDYDTKGDRTGITSLLNDLRNAGIRISDLDTKQSSLEDIF 264 IPD L+ Y+L LS DG + YDYDTKG+RTGITSLL DLR+AGIR DL+TKQSSLEDIF Sbjct: 241 IPDALAPYHLTLSADGWRLAYDYDTKGERTGITSLLGDLRSAGIRFVDLETKQSSLEDIF 300 Query: 265 VSLV 268 VSLV Sbjct: 301 VSLV 304