BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0003.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207509.1| hypothetical protein BRADO5620 [Bradyrhizobi... 258 4e-67 ref|YP_001241974.1| hypothetical protein BBta_6143 [Bradyrhizobi... 254 1e-65 ref|NP_773202.1| hypothetical protein blr6562 [Bradyrhizobium ja... 239 3e-61 ref|YP_001523696.1| OmpA family protein [Azorhizobium caulinodan... 141 6e-32 ref|YP_001416893.1| OmpA/MotB domain-containing protein [Xanthob... 134 7e-30 >ref|YP_001207509.1| hypothetical protein BRADO5620 [Bradyrhizobium sp. ORS 278] emb|CAL79292.1| Putative outer membrane protein [Bradyrhizobium sp. ORS 278] Length = 222 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 127/188 (67%), Positives = 155/188 (82%), Gaps = 3/188 (1%) Query: 13 SLSGLLGALLVLAMPLSPMQAQTAVTRDDIIAKLNHFETDAAIDVPALRLQTLERSKSRS 72 SL L+ A L LA +P +AQ VTR+DI+ +L+ FE ID+PAL+ QT ERSK R Sbjct: 7 SLLWLIAASLPLAS--APARAQ-EVTREDIVRQLSRFEAAPTIDLPALKQQTQERSKMRG 63 Query: 73 RNEPPPSSRPPIAPDLTKLPAFNVDVRFDVDTPIVMPESYATVGRIADALTHSALLPYTF 132 RNEPPPS RPPIAP+LT LP FNVD++FDVDTPIV PESY TVGRIADA+ ++ LLPYTF Sbjct: 64 RNEPPPSKRPPIAPELTSLPTFNVDIQFDVDTPIVRPESYQTVGRIADAMVYADLLPYTF 123 Query: 133 LIVGHIESGGRRDNNVLLSQRRADAIRDILVNTYKIAPKRLQSIGLGEEQLLDPARPNAP 192 LIVGHIE+ G+R++NV+LSQRRADAIRDIL NT+KI+ KRLQS+GLGEEQLLDP++P AP Sbjct: 124 LIVGHIEANGKRESNVILSQRRADAIRDILANTFKISVKRLQSVGLGEEQLLDPSKPTAP 183 Query: 193 VNSQVQIM 200 +N Q+QI+ Sbjct: 184 INQQIQII 191 >ref|YP_001241974.1| hypothetical protein BBta_6143 [Bradyrhizobium sp. BTAi1] gb|ABQ38068.1| Putative outer membrane protein [Bradyrhizobium sp. BTAi1] Length = 222 Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 126/194 (64%), Positives = 155/194 (79%), Gaps = 4/194 (2%) Query: 7 RGTREISLSGLLGALLVLAMPLSPMQAQTAVTRDDIIAKLNHFETDAAIDVPALRLQTLE 66 RG R + + GLL A+++ A ++P ++Q VTRDDI+ +L FE +D+PAL+ QT E Sbjct: 2 RGARSL-IGGLLAAVVITA--IAPARSQE-VTRDDIVRQLARFEAAPTLDLPALKQQTQE 57 Query: 67 RSKSRSRNEPPPSSRPPIAPDLTKLPAFNVDVRFDVDTPIVMPESYATVGRIADALTHSA 126 RSK R RNEPPP RPPIAP+L LPA NVD++FD DTPIV P+SY TVGRIADA+ HS Sbjct: 58 RSKLRGRNEPPPQKRPPIAPELMNLPALNVDIQFDQDTPIVRPDSYQTVGRIADAMVHSE 117 Query: 127 LLPYTFLIVGHIESGGRRDNNVLLSQRRADAIRDILVNTYKIAPKRLQSIGLGEEQLLDP 186 LLPYTFLIVGH+E+ GRR+ NV+LSQRRADAIRDIL NT+KI+ KRLQSIGLGEEQLLDP Sbjct: 118 LLPYTFLIVGHVEANGRREPNVILSQRRADAIRDILANTFKISVKRLQSIGLGEEQLLDP 177 Query: 187 ARPNAPVNSQVQIM 200 ++P A VN Q+QI+ Sbjct: 178 SKPTASVNQQIQII 191 >ref|NP_773202.1| hypothetical protein blr6562 [Bradyrhizobium japonicum USDA 110] dbj|BAC51827.1| blr6562 [Bradyrhizobium japonicum USDA 110] Length = 389 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/210 (58%), Positives = 153/210 (72%), Gaps = 9/210 (4%) Query: 5 SARGTREISL---SGL----LGALLVLAMPLSPMQAQTAV-TRDDIIAKLNHFETDAAID 56 RG R +S+ GL LG L +A+ AQT TRDDI+ KLNHFE A ID Sbjct: 157 EGRGRRGVSMMRAKGLTTAGLGIALGMALLAGAASAQTTPPTRDDIVGKLNHFEEAAEID 216 Query: 57 VPALRLQTLERSKSRSRNEPPPSSRPPIAPDLTKLPAFNVDVRFDVDTPIVMPESYATVG 116 +PAL+ Q +ER+K+R +N+P P +RPPIAPDL KLPAFN ++FD DTPI+ P SY TVG Sbjct: 217 LPALKQQVMERAKARIKNDPGPVNRPPIAPDLAKLPAFNAQIQFDADTPIIQPASYQTVG 276 Query: 117 RIADALTHSALLPYTFLIVGHIESGGR-RDNNVLLSQRRADAIRDILVNTYKIAPKRLQS 175 RIADAL H++LLPYTFLIVGH+ES + R+ N +LSQRRADAIRD+LVNT+KI+ KRL Sbjct: 277 RIADALVHASLLPYTFLIVGHVESNAKTREANAILSQRRADAIRDVLVNTFKISTKRLHP 336 Query: 176 IGLGEEQLLDPARPNAPVNSQVQIMLVAKL 205 IGLGEEQ LD A+P + N Q+QI+ AK+ Sbjct: 337 IGLGEEQFLDRAKPTSAANGQLQILTFAKV 366 >ref|YP_001523696.1| OmpA family protein [Azorhizobium caulinodans ORS 571] dbj|BAF86778.1| OmpA family protein [Azorhizobium caulinodans ORS 571] Length = 199 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 78/197 (39%), Positives = 121/197 (61%), Gaps = 5/197 (2%) Query: 10 REISLSGLLGALLVLAMPLSPMQAQTAVTRDDIIAKLNHFETDA-AIDVPALRLQTLERS 68 + + L G L A L+++ +P+ AQT ++ I+ LN+ DA + +LR L+ + Sbjct: 2 KSLMLRGALTAALLVSAA-APLAAQTDLSNAQIVQGLNNLTQDAPVVTAASLRQAALDHA 60 Query: 69 KSRSRNEPPPSSRPPIAPDLTKLPAFNVDVRFDVDTPIVMPESYATVGRIADALTHSALL 128 S PPS RPP+A L KL NV ++F +++ I++P+SYAT+G IADAL + L Sbjct: 61 TMYSG---PPSQRPPLAIQLDKLAQINVQIQFKLNSAIILPDSYATIGAIADALHNPVLQ 117 Query: 129 PYTFLIVGHIESGGRRDNNVLLSQRRADAIRDILVNTYKIAPKRLQSIGLGEEQLLDPAR 188 Y F++ G+ ++ G R++N+ LSQ RADA+ + L T+ + P RL+++GLGEE L D Sbjct: 118 GYRFIVTGNTDTTGTREHNLKLSQERADAVVEALTTTFNVNPARLEAVGLGEEALQDTKN 177 Query: 189 PNAPVNSQVQIMLVAKL 205 P +PVN +VQI V L Sbjct: 178 PESPVNRRVQIFNVGPL 194 >ref|YP_001416893.1| OmpA/MotB domain-containing protein [Xanthobacter autotrophicus Py2] gb|ABS67236.1| OmpA/MotB domain protein [Xanthobacter autotrophicus Py2] Length = 220 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 76/196 (38%), Positives = 118/196 (60%), Gaps = 13/196 (6%) Query: 18 LGALLVLA--------MPLSPMQAQTAVTRDDIIAKLNHFETDAAIDVPALRLQTLER-S 68 LGA L+LA + + P AQ +I+ L + DVP + + L + Sbjct: 22 LGAALLLAGTAVVPALVGVQPAAAQVFTPNAEIVQGLQ----TSVDDVPQVSAEALRGLA 77 Query: 69 KSRSRNEPPPSSRPPIAPDLTKLPAFNVDVRFDVDTPIVMPESYATVGRIADALTHSALL 128 ++ + PP SRPP+A L +L NV++ FD+++ ++ PESY T+G IADA+ + LL Sbjct: 78 QAHMKYTGPPESRPPLAAQLDQLAQINVEIVFDLNSAMIKPESYRTLGSIADAMHNPVLL 137 Query: 129 PYTFLIVGHIESGGRRDNNVLLSQRRADAIRDILVNTYKIAPKRLQSIGLGEEQLLDPAR 188 Y FL+VG+ ++ G R+ N+ LSQ R+DA+ + L T+++ P+RLQS+GLGEE L DP Sbjct: 138 GYKFLVVGNTDATGTRELNMKLSQERSDAVVEALSTTFRVDPRRLQSVGLGEEALQDPKH 197 Query: 189 PNAPVNSQVQIMLVAK 204 P+A +N +VQI V + Sbjct: 198 PDAAINRRVQIYNVGR 213