BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0001.p (541 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207507.1| DNA helicase II [Bradyrhizobium sp. ORS 278]... 933 0.0 ref|NP_773201.1| DNA helicase II [Bradyrhizobium japonicum USDA ... 929 0.0 ref|YP_001241972.1| ATP-dependent DNA helicase Rep [Bradyrhizobi... 924 0.0 ref|YP_533140.1| UvrD/REP helicase [Rhodopseudomonas palustris B... 916 0.0 ref|YP_577978.1| UvrD/REP helicase [Nitrobacter hamburgensis X14... 908 0.0 >ref|YP_001207507.1| DNA helicase II [Bradyrhizobium sp. ORS 278] emb|CAL79290.1| DNA helicase II [Bradyrhizobium sp. ORS 278] Length = 865 Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/547 (86%), Positives = 504/547 (92%), Gaps = 9/547 (1%) Query: 3 DGEREQTALKNICCVGDDDQSIYGWRGAEVDNILRFEHDFPGAKVIRLERNYRSTGHILA 62 D + A KNICCVGDDDQSIYGWRGAEVDNILRFEHDFPGAKVIRLERNYRSTGHILA Sbjct: 318 DAAQSAPAPKNICCVGDDDQSIYGWRGAEVDNILRFEHDFPGAKVIRLERNYRSTGHILA 377 Query: 63 AASHLIAHNEGRLGKTLRTEDVDGEKVTVTGSWDSEEEARAIGEELEELQRAGENLNDVA 122 AASHLI HNEGRLGKTL TEDV+GEKVTVTG+WDSEEEAR IGEE+EELQR GE+LND+A Sbjct: 378 AASHLITHNEGRLGKTLHTEDVEGEKVTVTGAWDSEEEARGIGEEIEELQRKGEHLNDIA 437 Query: 123 ILVRASFQMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRTINSPADDLAFERIV 182 ILVRAS+QMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLR INSPADDLAFERIV Sbjct: 438 ILVRASYQMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIV 497 Query: 183 NVPKRGLGDATVQLLHDHARKRRIPLFEAARAVVETDELKPKARGSLRDLVMQFDRWRAQ 242 NVPKRGLGDATVQLLHDHARKRRIPLFEAARAV ETDELKPKARGSLR L++QF+RWRAQ Sbjct: 498 NVPKRGLGDATVQLLHDHARKRRIPLFEAARAVAETDELKPKARGSLRGLILQFERWRAQ 557 Query: 243 REVTSHTELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENLQGFLEHISL 302 REVT HTELAEIVLDESGYTEMWQKDRSADAAGRL+NLKEL+RSMEEFENL GFLEHISL Sbjct: 558 REVTPHTELAEIVLDESGYTEMWQKDRSADAAGRLDNLKELIRSMEEFENLHGFLEHISL 617 Query: 303 VMDRDGEAGDEAVSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLDEQGRAGLEEERRLA 362 VMDR+G A +EAVSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLDEQGRAGLEEERRLA Sbjct: 618 VMDREGGADEEAVSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLDEQGRAGLEEERRLA 677 Query: 363 HVGLTRARRRAKIYFATNRRIHGTWSTTIPSRFLDELPAHNVEITESKGGSGWGGSGGYG 422 HVGLTRARRRAKIYFATNRRIHGTW+TTIPSRFLDELPA +VEITESKGGSGWGG+GGYG Sbjct: 678 HVGLTRARRRAKIYFATNRRIHGTWTTTIPSRFLDELPAASVEITESKGGSGWGGAGGYG 737 Query: 423 ASRFDNLESFGSSYSTPGWQRAQANRNRGGGGRGGSGFKERQSSFS---------SESFN 473 SRFDN+ESFGSSYSTPGWQRAQA R G G GF+E QS FS + +F Sbjct: 738 PSRFDNVESFGSSYSTPGWQRAQARRPGGARGSSEGGFQEEQSPFSGRDPFGGGFNGNFG 797 Query: 474 RSKRGPVVIEGELVAKSTGTTSDFSLDDRVFHQKFGYGHVVKIDGNKLTIAFEKAGEKKV 533 R+KRGP+ IEGELVAKSTGTTS+FS+DDRVFHQKFGYG+V+K+DGNKLTI+F+KAGEK V Sbjct: 798 RNKRGPLTIEGELVAKSTGTTSEFSVDDRVFHQKFGYGNVIKVDGNKLTISFDKAGEKHV 857 Query: 534 VDSFVER 540 VDSFV+R Sbjct: 858 VDSFVQR 864 >ref|NP_773201.1| DNA helicase II [Bradyrhizobium japonicum USDA 110] dbj|BAC51826.1| DNA helicase II [Bradyrhizobium japonicum USDA 110] Length = 872 Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/558 (84%), Positives = 504/558 (90%), Gaps = 19/558 (3%) Query: 2 KDGEREQTA--------LKNICCVGDDDQSIYGWRGAEVDNILRFEHDFPGAKVIRLERN 53 + G EQTA +KNICCVGDDDQSIYGWRGAEVDNILRFEHDFPGAKVIRLERN Sbjct: 314 RPGMTEQTAGTPTATPHVKNICCVGDDDQSIYGWRGAEVDNILRFEHDFPGAKVIRLERN 373 Query: 54 YRSTGHILAAASHLIAHNEGRLGKTLRTEDVDGEKVTVTGSWDSEEEARAIGEELEELQR 113 YRSTGHILAAASHLIAHNEGRLGKTLRTED DGEKVTVTGSWDSEEEAR IGEE+E++QR Sbjct: 374 YRSTGHILAAASHLIAHNEGRLGKTLRTEDQDGEKVTVTGSWDSEEEARGIGEEIEQIQR 433 Query: 114 AGENLNDVAILVRASFQMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRTINSPA 173 GE LN++AILVRAS+QMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLR INSPA Sbjct: 434 QGEKLNEIAILVRASYQMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRVINSPA 493 Query: 174 DDLAFERIVNVPKRGLGDATVQLLHDHARKRRIPLFEAARAVVETDELKPKARGSLRDLV 233 DDLAFERIVN PKRGLGDATVQ+LHDHARKRRIPLFEAARAVVETDELKPKARGSLRDLV Sbjct: 494 DDLAFERIVNTPKRGLGDATVQMLHDHARKRRIPLFEAARAVVETDELKPKARGSLRDLV 553 Query: 234 MQFDRWRAQREVTSHTELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENL 293 QFDRWRAQREVT+HT+LA+IVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENL Sbjct: 554 AQFDRWRAQREVTAHTDLAQIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENL 613 Query: 294 QGFLEHISLVMDRDGEAGDEAVSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLDEQGRA 353 QGFLEHISLVMDRDG A ++AVSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLDEQGRA Sbjct: 614 QGFLEHISLVMDRDGGAEEDAVSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLDEQGRA 673 Query: 354 GLEEERRLAHVGLTRARRRAKIYFATNRRIHGTWSTTIPSRFLDELPAHNVEITESKGGS 413 GLEEERRL HVG+TRARRRA IYFATNRRIHGTW+TTIPSRFLDELPA NVEITESKGGS Sbjct: 674 GLEEERRLGHVGITRARRRAMIYFATNRRIHGTWTTTIPSRFLDELPAANVEITESKGGS 733 Query: 414 GWGGSGGYGASRFDNLESFGSSYSTPGWQRAQAN---RNRGGGGRGGSGFKERQSSFSSE 470 WGG+GGYGASRFD++E+FGSSY+TPGWQRAQAN G G F+E ++FSS Sbjct: 734 AWGGTGGYGASRFDDMEAFGSSYTTPGWQRAQANRNRGGGRTGAGGHGSFEEEAATFSSS 793 Query: 471 --------SFNRSKRGPVVIEGELVAKSTGTTSDFSLDDRVFHQKFGYGHVVKIDGNKLT 522 SF+ +RGP+ IEGELVAKSTGTTS+FSL DRVFHQKFGYG V KIDGNKLT Sbjct: 794 SSSGPDFGSFSSRRRGPMTIEGELVAKSTGTTSEFSLSDRVFHQKFGYGRVTKIDGNKLT 853 Query: 523 IAFEKAGEKKVVDSFVER 540 IAF+KAGEKKVVDSFV+R Sbjct: 854 IAFDKAGEKKVVDSFVQR 871 >ref|YP_001241972.1| ATP-dependent DNA helicase Rep [Bradyrhizobium sp. BTAi1] gb|ABQ38066.1| ATP-dependent DNA helicase, Rep family [Bradyrhizobium sp. BTAi1] Length = 855 Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/540 (86%), Positives = 497/540 (92%), Gaps = 10/540 (1%) Query: 10 ALKNICCVGDDDQSIYGWRGAEVDNILRFEHDFPGAKVIRLERNYRSTGHILAAASHLIA 69 A KNICCVGDDDQSIYGWRGAEVDNILRFEHDFPGAKVIRLERNYRST HILAAASHLI Sbjct: 316 APKNICCVGDDDQSIYGWRGAEVDNILRFEHDFPGAKVIRLERNYRSTAHILAAASHLIT 375 Query: 70 HNEGRLGKTLRTEDVDGEKVTVTGSWDSEEEARAIGEELEELQRAGENLNDVAILVRASF 129 HNEGRLGKTLRTEDV+GEKVTVTG+WDSEEEAR IGEE+EELQR GE LND+AILVRAS+ Sbjct: 376 HNEGRLGKTLRTEDVEGEKVTVTGAWDSEEEARGIGEEIEELQRKGEPLNDIAILVRASY 435 Query: 130 QMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRTINSPADDLAFERIVNVPKRGL 189 QMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLR INSPADDLAFERI+NVPKRGL Sbjct: 436 QMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIINVPKRGL 495 Query: 190 GDATVQLLHDHARKRRIPLFEAARAVVETDELKPKARGSLRDLVMQFDRWRAQREVTSHT 249 GDATVQ+LHDHARKRRIPLFEAARAVVETDELKPKARGSLR L++QF+RWR QREVT HT Sbjct: 496 GDATVQMLHDHARKRRIPLFEAARAVVETDELKPKARGSLRGLILQFERWRTQREVTPHT 555 Query: 250 ELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENLQGFLEHISLVMDRDGE 309 ELAEIVLDESGYTEMWQKDRSADAAGRL+NLKEL+RSMEEFENL GFLEHISLVMDR+G Sbjct: 556 ELAEIVLDESGYTEMWQKDRSADAAGRLDNLKELIRSMEEFENLHGFLEHISLVMDREGA 615 Query: 310 AGDEAVSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLDEQGRAGLEEERRLAHVGLTRA 369 A ++AVSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLDEQGRAGLEEERRLAHVGLTRA Sbjct: 616 ADEDAVSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLDEQGRAGLEEERRLAHVGLTRA 675 Query: 370 RRRAKIYFATNRRIHGTWSTTIPSRFLDELPAHNVEITESKGGSGWGGSGGYGASRFDNL 429 RRRAKIYFATNRRIHGTW+TTIPSRFLDELPA +VEITESKGGSGWGG+GGYG SRFDN+ Sbjct: 676 RRRAKIYFATNRRIHGTWTTTIPSRFLDELPADSVEITESKGGSGWGGAGGYGPSRFDNV 735 Query: 430 ESFGSSYSTPGWQRAQANRNRGGGGRGGSGFKERQSSFS---------SESFNRSKRGPV 480 ESFGSSYSTPGWQRAQA R G G GF+E S F+ F R+KRGP+ Sbjct: 736 ESFGSSYSTPGWQRAQARRPASRGASEG-GFQEEPSPFAGRDPFGGSFGGPFGRNKRGPL 794 Query: 481 VIEGELVAKSTGTTSDFSLDDRVFHQKFGYGHVVKIDGNKLTIAFEKAGEKKVVDSFVER 540 IEGELVAKSTGTTS+F+L DRVFHQKFGYG VV++DGNKLTIAF+KAGEKKVVDSFVER Sbjct: 795 TIEGELVAKSTGTTSEFALGDRVFHQKFGYGKVVRVDGNKLTIAFDKAGEKKVVDSFVER 854 >ref|YP_533140.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18] gb|ABD88821.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris BisB18] Length = 866 Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/550 (84%), Positives = 503/550 (91%), Gaps = 10/550 (1%) Query: 1 VKDGEREQTAL----KNICCVGDDDQSIYGWRGAEVDNILRFEHDFPGAKVIRLERNYRS 56 V GE E A KNICCVGDDDQSIYGWRGAEVDNILRF+HDFPGAK+IRLERNYRS Sbjct: 318 VSKGEAEPPAASSPPKNICCVGDDDQSIYGWRGAEVDNILRFDHDFPGAKIIRLERNYRS 377 Query: 57 TGHILAAASHLIAHNEGRLGKTLRTEDVDGEKVTVTGSWDSEEEARAIGEELEELQRAGE 116 TGHILAAASHLIAHNEGRLGKTLRTEDVDGEKVTVTGSWDSEEEARAIGEE+E+LQR G Sbjct: 378 TGHILAAASHLIAHNEGRLGKTLRTEDVDGEKVTVTGSWDSEEEARAIGEEIEQLQRDGH 437 Query: 117 NLNDVAILVRASFQMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRTINSPADDL 176 LND+AILVRASFQMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLR INSPADDL Sbjct: 438 KLNDIAILVRASFQMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRVINSPADDL 497 Query: 177 AFERIVNVPKRGLGDATVQLLHDHARKRRIPLFEAARAVVETDELKPKARGSLRDLVMQF 236 AFERIVNVPKRGLGDATVQLLHDHARKR+IPL EAARA+V++DELKPKARGSLR+L+ F Sbjct: 498 AFERIVNVPKRGLGDATVQLLHDHARKRKIPLTEAARAIVDSDELKPKARGSLRELMTSF 557 Query: 237 DRWRAQREVTSHTELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENLQGF 296 +RWR QREV +HTELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENLQGF Sbjct: 558 ERWRMQREVKTHTELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENLQGF 617 Query: 297 LEHISLVMDRDGEAGDEAVSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLDEQGRAGLE 356 LEHISLVMDR+G A D+AVS+MTLHSAKGLEFD+VFLPGWEEGLFP QR LDEQGRAGLE Sbjct: 618 LEHISLVMDREGGADDDAVSVMTLHSAKGLEFDSVFLPGWEEGLFPHQRALDEQGRAGLE 677 Query: 357 EERRLAHVGLTRARRRAKIYFATNRRIHGTWSTTIPSRFLDELPAHNVEITESKGGSGWG 416 EERRLAHVG+TRAR+RAK+YFA+NRRIHGTW+TT+PSRFLDELPA +VEITESKGGSGWG Sbjct: 678 EERRLAHVGITRARKRAKLYFASNRRIHGTWNTTLPSRFLDELPADHVEITESKGGSGWG 737 Query: 417 GSGGYGASRFDNLESFGSSYSTPGWQRAQANRNRGGGGRGGSGFKERQSSFS-----SES 471 G+GGYG+SRFDN+ESFGSSY+TPGWQRAQANR + G G +GF E QS FS S+ Sbjct: 738 GAGGYGSSRFDNMESFGSSYTTPGWQRAQANRAKNSRGGGSNGFSEEQSPFSSSRGESDH 797 Query: 472 FNRSKRGPVVIEGELVAKSTGTTSDFSLDDRVFHQKFGYGHVVKIDGNKLTIAFEKAGEK 531 F + KR P+ IEGELVAKSTG SD++L DRVFHQKFGYG VV++DGNKLTIAF+KAGEK Sbjct: 798 FAK-KRAPLTIEGELVAKSTGAASDYALKDRVFHQKFGYGQVVRVDGNKLTIAFDKAGEK 856 Query: 532 KVVDSFVERV 541 KVVDSFVERV Sbjct: 857 KVVDSFVERV 866 >ref|YP_577978.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gb|ABE63518.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis X14] Length = 833 Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/530 (86%), Positives = 485/530 (91%), Gaps = 8/530 (1%) Query: 12 KNICCVGDDDQSIYGWRGAEVDNILRFEHDFPGAKVIRLERNYRSTGHILAAASHLIAHN 71 KNICCVGDDDQSIYGWRGAEVDNILRF+HDFPGAKVIRLERNYRSTGHILAAASHLIAHN Sbjct: 312 KNICCVGDDDQSIYGWRGAEVDNILRFDHDFPGAKVIRLERNYRSTGHILAAASHLIAHN 371 Query: 72 EGRLGKTLRTEDVDGEKVTVTGSWDSEEEARAIGEELEELQRAGENLNDVAILVRASFQM 131 EGRLGKTLRTEDVDGEKVTVTG WDSEEEAR IGEE+E+LQRAGE LN++AILVRASFQM Sbjct: 372 EGRLGKTLRTEDVDGEKVTVTGCWDSEEEARGIGEEIEQLQRAGEKLNEIAILVRASFQM 431 Query: 132 REFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRTINSPADDLAFERIVNVPKRGLGD 191 REFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLR INSPADDLAFERIVNVPKRGLGD Sbjct: 432 REFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRLINSPADDLAFERIVNVPKRGLGD 491 Query: 192 ATVQLLHDHARKRRIPLFEAARAVVETDELKPKARGSLRDLVMQFDRWRAQREVTSHTEL 251 ATVQ+LH+ ARKR+IPL EAARAVVETDEL+PKARGSLR L+ FDRWR QRE HTEL Sbjct: 492 ATVQMLHEIARKRQIPLSEAARAVVETDELRPKARGSLRALLDSFDRWRVQRETMPHTEL 551 Query: 252 AEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENLQGFLEHISLVMDRDGEAG 311 EIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENLQGFLEHISLVMDRDG Sbjct: 552 VEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENLQGFLEHISLVMDRDGGPD 611 Query: 312 DEAVSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLDEQGRAGLEEERRLAHVGLTRARR 371 ++AVS+MTLHSAKGLEFDNVFLPGWEEGLFP QR LDEQGRAGLEEERRLAHVGLTRARR Sbjct: 612 EDAVSVMTLHSAKGLEFDNVFLPGWEEGLFPHQRALDEQGRAGLEEERRLAHVGLTRARR 671 Query: 372 RAKIYFATNRRIHGTWSTTIPSRFLDELPAHNVEITESKGGSGWGGSGGYGASRFDNLES 431 RAK+YFATNRRIHG+WSTTIPSRFLDELPAHNVEITESKGGSGWGG+GGYG SRFDN+ES Sbjct: 672 RAKLYFATNRRIHGSWSTTIPSRFLDELPAHNVEITESKGGSGWGGTGGYGPSRFDNVES 731 Query: 432 FGSSYSTPGWQRAQANRNRGGGGRGGSGFKERQSSFSSESFNRSKRGPVVIEGELVAKST 491 FGSSY+TPGWQRAQANR RGG G+ + +S +SK P+ I+GELVAKST Sbjct: 732 FGSSYATPGWQRAQANRGRGGFNEAGTPYNASRS--------KSKHAPLTIDGELVAKST 783 Query: 492 GTTSDFSLDDRVFHQKFGYGHVVKIDGNKLTIAFEKAGEKKVVDSFVERV 541 GTTS FS DRVFHQKFGYG V +IDGNKLTIAFEKAGEKKVVDSFVERV Sbjct: 784 GTTSSFSPGDRVFHQKFGYGKVARIDGNKLTIAFEKAGEKKVVDSFVERV 833