BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0009.p (212 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002943497.1| GntR family transcriptional regulator [Vario... 162 3e-38 ref|YP_004154065.1| GntR family transcriptional regulator [Vario... 160 8e-38 ref|YP_260775.1| GntR family transcriptional regulator [Pseudomo... 153 1e-35 ref|YP_973055.1| GntR family transcriptional regulator [Acidovor... 153 1e-35 ref|YP_004237183.1| GntR domain-containing protein [Acidovorax a... 152 4e-35 >ref|YP_002943497.1| GntR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS18231.1| GntR domain protein [Variovorax paradoxus S110] Length = 261 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 84/193 (43%), Positives = 120/193 (62%), Gaps = 7/193 (3%) Query: 1 MFGCSRSTIREALKSLEVQGLVQNTTGPGGGARVAPVSINRIVGLLSNYFYFQSTSTAQI 60 +FG S+ST+REALK+LEV+GLV TGPGGGA + VS++ L N+ +F I Sbjct: 52 LFGYSKSTVREALKALEVRGLVSIRTGPGGGAYLQQVSVDHASEPLRNFLHFHHLDGHHI 111 Query: 61 YQIRRLIEPELAFSVVGHLTAAHFAALEKAIAVQEHHPDGDADWEHHRHAEIDFHDILIE 120 YQ+R+++EPELA SVVG LT F LE + + P + + R AE+ FH +L E Sbjct: 112 YQLRKVLEPELAVSVVGKLTPEQFERLEANVRLCTLEPTNEDELRTQREAELAFHTMLAE 171 Query: 121 ACPNPLLGLMCRFVNEAIRHLI---GKLGVQEFASSFTCENIEFHKRLLAAFRSGNAARA 177 ACPNP+L MCRF+N+ +R L+ L F + N+++H +LLAA+R +A Sbjct: 172 ACPNPVLSFMCRFLNDLLRDLVVYKKALDHHHFGEA----NVDYHTQLLAAYRREDANEV 227 Query: 178 RRVMLDHVLSAEA 190 RR+M +H++ AEA Sbjct: 228 RRLMAEHMVDAEA 240 >ref|YP_004154065.1| GntR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU35954.1| GntR domain protein [Variovorax paradoxus EPS] Length = 254 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 81/189 (42%), Positives = 118/189 (62%), Gaps = 1/189 (0%) Query: 1 MFGCSRSTIREALKSLEVQGLVQNTTGPGGGARVAPVSINRIVGLLSNYFYFQSTSTAQI 60 +FG S+ST+REALK+LEV+GL+ TGPGGGA + VS++ L N+ +F I Sbjct: 45 LFGYSKSTVREALKALEVRGLISIRTGPGGGAYLQQVSVDHASEPLRNFLHFHHLDGHHI 104 Query: 61 YQIRRLIEPELAFSVVGHLTAAHFAALEKAIAVQEHHPDGDADWEHHRHAEIDFHDILIE 120 YQ+R+++EPELA SVVG LT F LE + + P + + R AE+ FH +L E Sbjct: 105 YQLRKVLEPELAVSVVGRLTPEQFERLEDNVRLCTIEPTNEDELRKQREAELGFHIMLAE 164 Query: 121 ACPNPLLGLMCRFVNEAIRHLIGKLGVQEFASSFTCENIEFHKRLLAAFRSGNAARARRV 180 ACPNP+L MCRF+N+ +R L+ + F N+++H +LLAA+R +A RR+ Sbjct: 165 ACPNPVLSFMCRFLNDLLRDLVVYKKALDH-HHFGEANVDYHTQLLAAYRKEDAEEVRRL 223 Query: 181 MLDHVLSAE 189 M +H++ AE Sbjct: 224 MAEHMVDAE 232 >ref|YP_260775.1| GntR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gb|AAY92939.1| transcriptional regulator, GntR family [Pseudomonas fluorescens Pf-5] Length = 256 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 79/189 (41%), Positives = 112/189 (59%), Gaps = 1/189 (0%) Query: 2 FGCSRSTIREALKSLEVQGLVQNTTGPGGGARVAPVSINRIVGLLSNYFYFQSTSTAQIY 61 F CS+ + REALK+LEV+GLV TGP GGA + L NY +FQ Q+Y Sbjct: 46 FQCSKGSAREALKALEVEGLVNTRTGPNGGAYLNQAGTEPASRALRNYLHFQHMDGEQVY 105 Query: 62 QIRRLIEPELAFSVVGHLTAAHFAALEKAIAVQEHHPDGDADWEHHRHAEIDFHDILIEA 121 Q+R++IE ELA SV+G L+ A F AL+ I H D +A R AE++FH++L A Sbjct: 106 QLRKVIEVELAVSVIGRLSEADFKALQDNIDFCSHPEDSEAGQREQRIAELEFHNLLGRA 165 Query: 122 CPNPLLGLMCRFVNEAIRHLIG-KLGVQEFASSFTCENIEFHKRLLAAFRSGNAARARRV 180 CPNPLL M +F+N+ +R L+ K + F N+++HKRLL A R+ + R++ Sbjct: 166 CPNPLLSFMAQFLNDLLRDLVVLKKAYKPKRKQFDAANLDYHKRLLLALRAEDERAVRQL 225 Query: 181 MLDHVLSAE 189 M +H+ AE Sbjct: 226 MHEHMCDAE 234 >ref|YP_973055.1| GntR family transcriptional regulator [Acidovorax citrulli AAC00-1] gb|ABM35281.1| transcriptional regulator, GntR family [Acidovorax citrulli AAC00-1] Length = 273 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/193 (43%), Positives = 112/193 (58%), Gaps = 3/193 (1%) Query: 2 FGCSRSTIREALKSLEVQGLVQNTTGPGGGARVAPVSINRIVGLLSNYFYFQSTSTAQIY 61 F S+ TIREALKSLEVQGLV +TGP GG +A VS++R + L NY +FQ + IY Sbjct: 52 FEVSKGTIREALKSLEVQGLVTISTGPSGGGTIAEVSLDRTLQFLQNYLFFQDVTIDNIY 111 Query: 62 QIRRLIEPELAFSVVGHLTAAHFAALEKAIAVQEHHPDGDADWEHHRHAEIDFHDILIEA 121 +R+ +EPELA V HLT A F ALE +IA + H + D R +++FHDIL A Sbjct: 112 AVRQFLEPELAAGAVPHLTEADFEALEHSIACCDPHSSSE-DLIAQRREDVNFHDILAAA 170 Query: 122 CPNPLLGLMCRFVNEAIRHLI--GKLGVQEFASSFTCENIEFHKRLLAAFRSGNAARARR 179 PNP L C +NE +R LI G + F N FH+ ++ A R+ +AA R Sbjct: 171 NPNPFLRFACELINEMLRQLIVYGNRTPKSEHRRFGETNARFHREIVQAARARDAALVRE 230 Query: 180 VMLDHVLSAEAVV 192 +M H+L A + V Sbjct: 231 LMARHMLDAASSV 243 >ref|YP_004237183.1| GntR domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX48616.1| GntR domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 270 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/193 (43%), Positives = 111/193 (57%), Gaps = 3/193 (1%) Query: 2 FGCSRSTIREALKSLEVQGLVQNTTGPGGGARVAPVSINRIVGLLSNYFYFQSTSTAQIY 61 F S+ TIREALKSLEVQGLV +TGP GG +A VS++R + L NY +FQ + IY Sbjct: 49 FEVSKGTIREALKSLEVQGLVTISTGPSGGGTIAEVSLDRTLQFLQNYLFFQDVTIDNIY 108 Query: 62 QIRRLIEPELAFSVVGHLTAAHFAALEKAIAVQEHHPDGDADWEHHRHAEIDFHDILIEA 121 +R+ +EPELA V HLT A F ALE +IA + H + D R +++FHDIL A Sbjct: 109 AVRQFLEPELAAGAVPHLTEADFDALEHSIACCDPHSSSE-DLLAQRREDVNFHDILAAA 167 Query: 122 CPNPLLGLMCRFVNEAIRHLI--GKLGVQEFASSFTCENIEFHKRLLAAFRSGNAARARR 179 PNP L C +NE +R LI G + F N FH+ ++ A R+ +A R Sbjct: 168 NPNPFLRFTCELINEMLRQLIVYGNRTPKSEHRRFGETNARFHREIVQAARARDAVLVRE 227 Query: 180 VMLDHVLSAEAVV 192 +M H+L A + V Sbjct: 228 LMARHMLDAASSV 240