BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0005.p (618 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773998.1| hypothetical protein bll7358 [Bradyrhizobium ja... 553 e-155 ref|NP_769552.1| ABC transporter permease [Bradyrhizobium japoni... 504 e-140 ref|ZP_06896048.1| amino acid ABC superfamily ATP binding casset... 412 e-113 ref|YP_002490053.1| polar amino acid ABC transporter, inner memb... 386 e-105 ref|YP_787552.1| L-amino acid ABC transporter permease [Bordetel... 371 e-100 >ref|NP_773998.1| hypothetical protein bll7358 [Bradyrhizobium japonicum USDA 110] dbj|BAC52623.1| bll7358 [Bradyrhizobium japonicum USDA 110] Length = 497 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 257/297 (86%), Positives = 275/297 (92%), Gaps = 3/297 (1%) Query: 3 LVLLANGASA---QQKIGDPPEASNMRLVGTNDLQARSAYQPTIHHQGDKWIAYIGHHGG 59 LV A G A +Q IG PPEASNM+LVGTNDLQARSAYQPTIHHQG++WIAYIGHHGG Sbjct: 27 LVFFACGTPAYAQKQTIGAPPEASNMKLVGTNDLQARSAYQPTIHHQGERWIAYIGHHGG 86 Query: 60 TDDIPDPVNPMTGKAEPNGTSIVDVTDPAHPKYLRHIPGQEGRYESGGAQMVRICDGKDL 119 TDD+P PVNPMTG+AEPNGTSIVDVTDPAHPKYLRH+PGQEG+YESGGAQMVR+CDGK L Sbjct: 87 TDDVPAPVNPMTGQAEPNGTSIVDVTDPAHPKYLRHLPGQEGKYESGGAQMVRVCDGKSL 146 Query: 120 PKGDRNAVYMLRTFGSEAHEIWNVADPANPVLVTRIGGLKDTHKSFWECGTGIAFLVSGA 179 PKGD NAVYMLRTFGSEAHEIWNVADPA+PVL+ RIGGLKDTHKS+WEC TGIAFLVSGA Sbjct: 147 PKGDPNAVYMLRTFGSEAHEIWNVADPASPVLIARIGGLKDTHKSWWECDTGIAFLVSGA 206 Query: 180 PDWRTRRMTQVYDLSDPAQPTKIRDFGLPGQEPGATGAVPTELHGPISTGPQGNRVYFGY 239 PDWRTRRMTQVYDLSDPA P KIRDFGLPGQEPGATGAVPTELHGPISTGPQGNRV+FGY Sbjct: 207 PDWRTRRMTQVYDLSDPAHPQKIRDFGLPGQEPGATGAVPTELHGPISTGPQGNRVFFGY 266 Query: 240 GTNKGGFLQIVDRDKLLNGPKQPTPDNLKYPEIARMPLSAMNGAHTVFPMPGMPIAD 296 GTNKGG LQIVDRDKLLNGPK+PTPDNL+YPEIARMP+SA NGAHT FPM MP+A+ Sbjct: 267 GTNKGGILQIVDRDKLLNGPKEPTPDNLRYPEIARMPMSAFNGAHTTFPMLDMPVAE 323 >ref|NP_769552.1| ABC transporter permease [Bradyrhizobium japonicum USDA 110] dbj|BAC48177.1| blr2912 [Bradyrhizobium japonicum USDA 110] Length = 395 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 253/328 (77%), Positives = 290/328 (88%) Query: 291 GMPIADSWIDYTPKNTYLRAFIVGVVNTLRVAVIGIVLATVIGTLVGIARLSSNWLLARL 350 GMPIADS + Y P++TYL AF+VG+VNTLRVAVIGIVLAT++GTL+GI+RLS+NWLL+RL Sbjct: 68 GMPIADSLLAYNPRDTYLWAFVVGIVNTLRVAVIGIVLATILGTLIGISRLSANWLLSRL 127 Query: 351 AAVYVEVLRDLPLLLQLLFWYVLMQGLPAARQAWKPVDGVYLSNRGLVLPSVPLHEANGW 410 AAVYVE LRD+PLLLQLLFWYVLMQGLPAAR A++P++GV+LSNRGL+LP++P+ W Sbjct: 128 AAVYVETLRDIPLLLQLLFWYVLMQGLPAARAAFRPLEGVFLSNRGLILPAIPIGAPQLW 187 Query: 411 TLVALVVGVIVFIIVRRRLIAQQMLDGKARPAWPYALGLIIALPALVSWLLGASWSVMLP 470 L +G VF + RR IAQQM DGK R AWP+ALGLI+ LPA VS LLG W++ P Sbjct: 188 VLGTAALGCAVFYVFRRWQIAQQMRDGKPRSAWPFALGLIVMLPAAVSVLLGVPWAIEWP 247 Query: 471 ELRGFNFVGGLTLAPEYFALLIALVTYTSAFIAEIVRSGIQAVPRGQSDAAKALGLKRSF 530 ELRGFNFVGGLTLAPEYFALLIALV YTSAFIAEIVRSGIQ+VPRGQ DAA ALGL+RSF Sbjct: 248 ELRGFNFVGGLTLAPEYFALLIALVAYTSAFIAEIVRSGIQSVPRGQWDAANALGLRRSF 307 Query: 531 VLQHIVLPQALRVIIPPMTSQYLNLTKNSSLAVAVGYQDIVSIANTTLNQTGQAIESIAL 590 +L+ I+LPQALRVI+PPMTSQYLNLTKNSSLAVA+GYQD+VS+ANTTLNQTGQAIE+IAL Sbjct: 308 MLRQIILPQALRVIVPPMTSQYLNLTKNSSLAVAIGYQDVVSVANTTLNQTGQAIEAIAL 367 Query: 591 IMMVFLTISLGISLFMNWYNARIALVER 618 IM VFLTISLGIS FMNWYNARIALVER Sbjct: 368 IMAVFLTISLGISFFMNWYNARIALVER 395 >ref|ZP_06896048.1| amino acid ABC superfamily ATP binding cassette transporter, permease protein [Roseomonas cervicalis ATCC 49957] gb|EFH12248.1| amino acid ABC superfamily ATP binding cassette transporter, permease protein [Roseomonas cervicalis ATCC 49957] Length = 400 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 221/328 (67%), Positives = 269/328 (82%) Query: 291 GMPIADSWIDYTPKNTYLRAFIVGVVNTLRVAVIGIVLATVIGTLVGIARLSSNWLLARL 350 G+P+A+S I Y+P +TY RA +VGV+NTL++AV+G+VLAT+ GTL+GIARLS NWLL+R+ Sbjct: 73 GLPVAESLIPYSPTDTYARALMVGVLNTLKIAVVGVVLATLFGTLLGIARLSKNWLLSRI 132 Query: 351 AAVYVEVLRDLPLLLQLLFWYVLMQGLPAARQAWKPVDGVYLSNRGLVLPSVPLHEANGW 410 AA YVEV+RDLPLLLQLLFWY ++QGLP RQA P++GV+LSNRGL LP + +A+ + Sbjct: 133 AAAYVEVVRDLPLLLQLLFWYAILQGLPGPRQALHPMEGVFLSNRGLKLPWIQWQDAHSF 192 Query: 411 TLVALVVGVIVFIIVRRRLIAQQMLDGKARPAWPYALGLIIALPALVSWLLGASWSVMLP 470 L+ V G+++ + R A+QM DG+ R WP ALGLII LP + LGA W+ +P Sbjct: 193 ALLGFVAGIVLTVFYARAARARQMADGQPRRVWPAALGLIIGLPLAIWAGLGAPWTGDIP 252 Query: 471 ELRGFNFVGGLTLAPEYFALLIALVTYTSAFIAEIVRSGIQAVPRGQSDAAKALGLKRSF 530 LRGFNF GGLT+ PEYFALLI LV YT+AFIAEIVR+GI AV +GQ +AA+ALGL R Sbjct: 253 ALRGFNFQGGLTITPEYFALLIGLVMYTAAFIAEIVRAGILAVAKGQWEAAEALGLPRGL 312 Query: 531 VLQHIVLPQALRVIIPPMTSQYLNLTKNSSLAVAVGYQDIVSIANTTLNQTGQAIESIAL 590 +++ IVLPQALRVI+PPMTSQYLNLTKNSSLAVA+GYQDIVSIANTTLNQTGQAIE IA+ Sbjct: 313 IMRKIVLPQALRVIVPPMTSQYLNLTKNSSLAVAIGYQDIVSIANTTLNQTGQAIEGIAI 372 Query: 591 IMMVFLTISLGISLFMNWYNARIALVER 618 IM V+LTISL ISLFMNWYNARIALVER Sbjct: 373 IMAVYLTISLSISLFMNWYNARIALVER 400 >ref|YP_002490053.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium nodulans ORS 2060] gb|ACL62886.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium nodulans ORS 2060] Length = 403 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 207/329 (62%), Positives = 254/329 (77%), Gaps = 1/329 (0%) Query: 291 GMPIADSWIDYTPK-NTYLRAFIVGVVNTLRVAVIGIVLATVIGTLVGIARLSSNWLLAR 349 G+PI + IDY P +TY RA ++GV+NTL+VAV+G+VLAT+ GTL+GIARLS NWL+++ Sbjct: 75 GIPIGEHLIDYDPAVSTYGRALLIGVLNTLKVAVVGVVLATLWGTLLGIARLSRNWLVSK 134 Query: 350 LAAVYVEVLRDLPLLLQLLFWYVLMQGLPAARQAWKPVDGVYLSNRGLVLPSVPLHEANG 409 LAAVYVE++RD+PLLLQLLFWY ++Q LPA RQ++ PV GV+LSNRG+ +P V E Sbjct: 135 LAAVYVEIIRDVPLLLQLLFWYSILQALPAPRQSFHPVPGVFLSNRGVKIPFVEWDEPYW 194 Query: 410 WTLVALVVGVIVFIIVRRRLIAQQMLDGKARPAWPYALGLIIALPALVSWLLGASWSVML 469 W L+AL VG + R +Q G WP A+ L++ P V LGA + + Sbjct: 195 WALLALTVGAVGTWAWSRAATRRQERIGTRPKVWPMAILLMVGFPVAVWAGLGAPFVADV 254 Query: 470 PELRGFNFVGGLTLAPEYFALLIALVTYTSAFIAEIVRSGIQAVPRGQSDAAKALGLKRS 529 PELRGF+F GG T++PEY AL + LV YT+AFIAEIVRSGI AVP GQ +AA ALG++R Sbjct: 255 PELRGFDFNGGGTISPEYGALTMGLVIYTAAFIAEIVRSGILAVPTGQWEAAAALGVRRG 314 Query: 530 FVLQHIVLPQALRVIIPPMTSQYLNLTKNSSLAVAVGYQDIVSIANTTLNQTGQAIESIA 589 +L+ IVLPQALRVIIPPMTSQYLNL KNSSLAVA+GYQDIVSIANTTLNQTGQAIE IA Sbjct: 315 IILRKIVLPQALRVIIPPMTSQYLNLIKNSSLAVAIGYQDIVSIANTTLNQTGQAIEGIA 374 Query: 590 LIMMVFLTISLGISLFMNWYNARIALVER 618 ++M+V+L ISL ISLFMNWYN RIALVER Sbjct: 375 MVMLVYLVISLSISLFMNWYNGRIALVER 403 >ref|YP_787552.1| L-amino acid ABC transporter permease [Bordetella avium 197N] emb|CAJ50667.1| L-amino acid ABC transporter, permease protein [Bordetella avium 197N] Length = 392 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/330 (60%), Positives = 251/330 (76%), Gaps = 4/330 (1%) Query: 291 GMPIADSWIDYTPKNTYLRAFIVGVVNTLRVAVIGIVLATVIGTLVGIARLSSNWLLARL 350 G I ++ I YTP +TY RA +VG++NTLRVAV+GI+LAT++GTL+GI RLS NWL+ARL Sbjct: 65 GFAIGETPIAYTPADTYGRAIMVGLLNTLRVAVLGIILATILGTLIGIGRLSKNWLVARL 124 Query: 351 AAVYVEVLRDLPLLLQLLFWYVLM-QGLPAARQAWKPVDGVYLSNRGLVLPSVPLHEANG 409 ++YVEV+R++PLLLQL FWY L+ + +P RQA P+ GV++SNRG+ +P + + Sbjct: 125 TSLYVEVMRNVPLLLQLFFWYALITENMPGPRQAHNPLPGVFISNRGIKIPE-AVGNSLD 183 Query: 410 WTLVALVVGVIVFIIVRRRLIAQQMLDGKARPAWPYALGLIIALPALVSWLL-GASWSVM 468 W L+ L + +I + + +Q G+ P A+GL+I LP L WLL G ++ Sbjct: 184 WILLGLAIAIIATLYLGHWAKKRQHATGQVFPLIRTAIGLLIVLPVL-GWLLSGMQLTLT 242 Query: 469 LPELRGFNFVGGLTLAPEYFALLIALVTYTSAFIAEIVRSGIQAVPRGQSDAAKALGLKR 528 +PEL+GFNF GGLTL PE+ ALL LV YTSAFIAE+VRSGIQAV GQ +AA ALGL+R Sbjct: 243 MPELKGFNFQGGLTLTPEFAALLAGLVIYTSAFIAEVVRSGIQAVNNGQWEAAGALGLRR 302 Query: 529 SFVLQHIVLPQALRVIIPPMTSQYLNLTKNSSLAVAVGYQDIVSIANTTLNQTGQAIESI 588 S VL+ +VLPQALRVIIPPMTSQYLNLTKNSSLAVA+GY DIVS+ NTTLNQTGQAIE I Sbjct: 303 SLVLRLVVLPQALRVIIPPMTSQYLNLTKNSSLAVAIGYPDIVSVVNTTLNQTGQAIEGI 362 Query: 589 ALIMMVFLTISLGISLFMNWYNARIALVER 618 +IM +LT+SL IS+FMNWYN RIALVER Sbjct: 363 LIIMAAYLTVSLSISIFMNWYNKRIALVER 392