BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0004.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_773999.1| transcriptional regulator [Bradyrhizobium japon...   194   4e-48
ref|ZP_07025198.1| putative transcriptional regulator, ArsR fami...   185   2e-45
ref|NP_946633.1| ArsR family transcriptional regulator [Rhodopse...   183   8e-45
ref|YP_002288136.1| DNA-binding protein [Oligotropha carboxidovo...   182   2e-44
ref|YP_571101.1| helix-turn-helix, type 11 [Rhodopseudomonas pal...   180   5e-44

>ref|NP_773999.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52624.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 104

 Score =  194 bits (493), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/104 (90%), Positives = 99/104 (95%)

Query: 1   MDEVFKALADASRRTLLDRLHDQNGQSLGELCDGLEMTRQAVTKHLVILEEANLVTTIKH 60
           MDEVFKALADASRR+LLDRLH +NGQ+L ELC+GL MTRQAVTKHLVILEEANLVT I+H
Sbjct: 1   MDEVFKALADASRRSLLDRLHARNGQTLNELCEGLAMTRQAVTKHLVILEEANLVTAIRH 60

Query: 61  GREKLHYLNPVPIHQIGERWIRKFERGKLAALSELKRQLEKRDE 104
           GREKLHYLNPVPIHQIGERWIRKFERGKLAAL ELKRQLEKRDE
Sbjct: 61  GREKLHYLNPVPIHQIGERWIRKFERGKLAALGELKRQLEKRDE 104


>ref|ZP_07025198.1| putative transcriptional regulator, ArsR family [Afipia sp. 1NLS2]
 gb|EFI52340.1| putative transcriptional regulator, ArsR family [Afipia sp. 1NLS2]
          Length = 104

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/104 (86%), Positives = 96/104 (92%)

Query: 1   MDEVFKALADASRRTLLDRLHDQNGQSLGELCDGLEMTRQAVTKHLVILEEANLVTTIKH 60
           MDEVFKALADASRR LLDRLH +NGQ+L ELC+GL+MTRQAVTKHL ILE ANLV TIKH
Sbjct: 1   MDEVFKALADASRRLLLDRLHARNGQTLLELCNGLDMTRQAVTKHLAILENANLVATIKH 60

Query: 61  GREKLHYLNPVPIHQIGERWIRKFERGKLAALSELKRQLEKRDE 104
           GREKLHYLNPVPIHQIGERWI+KFERGKL  LSELKR+LEKRDE
Sbjct: 61  GREKLHYLNPVPIHQIGERWIKKFERGKLETLSELKRKLEKRDE 104


>ref|NP_946633.1| ArsR family transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 ref|YP_001990490.1| ArsR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 emb|CAE26725.1| possible transcriptional regulator, ArsR family [Rhodopseudomonas
           palustris CGA009]
 gb|ACF00015.1| transcriptional regulator, ArsR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 104

 Score =  183 bits (464), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 86/104 (82%), Positives = 95/104 (91%)

Query: 1   MDEVFKALADASRRTLLDRLHDQNGQSLGELCDGLEMTRQAVTKHLVILEEANLVTTIKH 60
           MDEVFKALAD SRR LLDRLH +NGQ+L +LCDGL MTRQAVTKHL ILE ANLV T+KH
Sbjct: 1   MDEVFKALADGSRRALLDRLHARNGQTLSDLCDGLAMTRQAVTKHLAILEAANLVATVKH 60

Query: 61  GREKLHYLNPVPIHQIGERWIRKFERGKLAALSELKRQLEKRDE 104
           GREKLHYLNP+PIH+IGERWIRKFERG+LAALS+LKR+LE RDE
Sbjct: 61  GREKLHYLNPMPIHEIGERWIRKFERGRLAALSDLKRKLETRDE 104


>ref|YP_002288136.1| DNA-binding protein [Oligotropha carboxidovorans OM5]
 ref|YP_004633762.1| ArsR family transcriptional regulator [Oligotropha carboxidovorans
           OM5]
 gb|ACI92271.1| putative DNA-binding protein [Oligotropha carboxidovorans OM5]
 gb|AEI03944.1| transcriptional regulator, ArsR family [Oligotropha carboxidovorans
           OM4]
 gb|AEI07521.1| transcriptional regulator, ArsR family [Oligotropha carboxidovorans
           OM5]
          Length = 104

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/104 (84%), Positives = 95/104 (91%)

Query: 1   MDEVFKALADASRRTLLDRLHDQNGQSLGELCDGLEMTRQAVTKHLVILEEANLVTTIKH 60
           MDEVFKALADASRR+LLDRLH +NGQ+L ELC GL MTRQAVTKHL ILE+ANLV TI+H
Sbjct: 1   MDEVFKALADASRRSLLDRLHARNGQTLLELCSGLAMTRQAVTKHLAILEDANLVVTIRH 60

Query: 61  GREKLHYLNPVPIHQIGERWIRKFERGKLAALSELKRQLEKRDE 104
           GREKLHYLNPVPIHQIGERWIRKFE  +LAALS LK+QLEKRDE
Sbjct: 61  GREKLHYLNPVPIHQIGERWIRKFEHDRLAALSTLKKQLEKRDE 104


>ref|YP_571101.1| helix-turn-helix, type 11 [Rhodopseudomonas palustris BisB5]
 gb|ABE41200.1| transcriptional regulator, ArsR family [Rhodopseudomonas palustris
           BisB5]
          Length = 107

 Score =  180 bits (457), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 94/104 (90%)

Query: 1   MDEVFKALADASRRTLLDRLHDQNGQSLGELCDGLEMTRQAVTKHLVILEEANLVTTIKH 60
           MDEVFKALADASRR LLDRLH +NGQ+L ELCDGL MTRQAVTKHL ILE ANL++T+KH
Sbjct: 4   MDEVFKALADASRRALLDRLHARNGQTLSELCDGLAMTRQAVTKHLAILEAANLISTLKH 63

Query: 61  GREKLHYLNPVPIHQIGERWIRKFERGKLAALSELKRQLEKRDE 104
           GREKLHYLNPVPIH+IG RWI KFERG+L AL++LKR+LE RDE
Sbjct: 64  GREKLHYLNPVPIHEIGARWISKFERGRLVALADLKRKLEARDE 107