BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0054.p (458 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767198.1| hypothetical protein bll0558 [Bradyrhizobium ja... 674 0.0 ref|YP_001236477.1| hypothetical protein BBta_0277 [Bradyrhizobi... 662 0.0 ref|YP_001202492.1| putative hydrolase [Bradyrhizobium sp. ORS 2... 660 0.0 ref|YP_567825.1| twin-arginine translocation pathway signal [Rho... 655 0.0 ref|YP_483740.1| twin-arginine translocation pathway signal [Rho... 641 0.0 >ref|NP_767198.1| hypothetical protein bll0558 [Bradyrhizobium japonicum USDA 110] dbj|BAC45823.1| bll0558 [Bradyrhizobium japonicum USDA 110] Length = 467 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/458 (73%), Positives = 376/458 (82%), Gaps = 2/458 (0%) Query: 1 MALSRRRILQGAGVLSLLAGRLGAPALAQSASAQPVPAGDTPPILFVHGNGDHAPLWMTT 60 M LSRR ILQGAG L + A AQ+A A + PPILFVHGNGD+ LWMTT Sbjct: 12 MKLSRRTILQGAGTLPFALASVRMDAFAQTAPA--AQGAEVPPILFVHGNGDYDALWMTT 69 Query: 61 FWRMESNGVPRARMAAINFTDPLARTDDKIEQASRSSTEDQRRELAEAIRELKQTTGAPR 120 WRMESNG+ R RM AINFTDP AR+DD +EQA+RSSTEDQRRELA AI ELK+ TGA R Sbjct: 70 MWRMESNGIARDRMLAINFTDPNARSDDTVEQANRSSTEDQRRELAAAIAELKRRTGAAR 129 Query: 121 VALVGSSRGGNAIRNYIKNGGGGDVSHAVLCGTPNHGVYAWDDGLGNEFNGRGPFLRGLN 180 VALVGSSRGG AIRN ++NGG DVSHAVLCGTPNHGV+A DD NEFNGRG FLRGLN Sbjct: 130 VALVGSSRGGYAIRNVVRNGGVADVSHAVLCGTPNHGVFASDDQPNNEFNGRGVFLRGLN 189 Query: 181 EGDNEVTVGTLFLTLRSDGLDKYAQADGRFVGKPGTPTNVTTEGPALKGATNLVLGAVDH 240 G++EVT GT FLTLRSDG+DKYAQADGRF+GKPGTPT VT EGP L+GATNLVLGA+DH Sbjct: 190 GGESEVTPGTAFLTLRSDGMDKYAQADGRFIGKPGTPTGVTAEGPELRGATNLVLGALDH 249 Query: 241 RETAFHPRAFREIYRFIARHEPSRIGIVPETAVRLSGLVTGMPGGVPTNRPVPGATVDIY 300 RE AFHPRAFREIY+FIA EP+RI IVPE +VRLSGLVTG PGGV TNRPV GATVDI+ Sbjct: 250 REVAFHPRAFREIYKFIAGREPARIAIVPEPSVRLSGLVTGTPGGVSTNRPVAGATVDIF 309 Query: 301 HVAAETGERIGGPLHSSQTGADGHWGPAQLDPSWPLEFVLTSPGTATTHIYRSPFPRSSE 360 V +TGER G +HS++TGADG WGPAQ++PSWPLEFVL SP TTHIYRSPFPRSS+ Sbjct: 310 RVDPDTGERNGNAVHSAKTGADGRWGPAQVEPSWPLEFVLASPDAPTTHIYRSPFPRSSD 369 Query: 361 IVHLRAARPLGPADAGAGAVVLMSRPRGYFGLPRDIVLFDGKEPADVKPGVPTDSVTTLR 420 +VHLRAARPLGPAD AGAVV+MSRPRGYFGLPRD+VL DGKEPADVKPGVPTD+ TLR Sbjct: 370 VVHLRAARPLGPADKDAGAVVIMSRPRGYFGLPRDVVLLDGKEPADVKPGVPTDATATLR 429 Query: 421 PTADDVGRPVAAIFNGERIMMRAWPASENRIAVAELTY 458 A ++GR + A F ERI+ R WPA+ENRIAVAELTY Sbjct: 430 LPAGEIGRNIVAQFGEERIVARLWPAAENRIAVAELTY 467 >ref|YP_001236477.1| hypothetical protein BBta_0277 [Bradyrhizobium sp. BTAi1] gb|ABQ32571.1| hypothetical protein BBta_0277 [Bradyrhizobium sp. BTAi1] Length = 454 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/458 (71%), Positives = 374/458 (81%), Gaps = 6/458 (1%) Query: 1 MALSRRRILQGAGVLSLLAGRLGAPALAQSASAQPVPAG-DTPPILFVHGNGDHAPLWMT 59 M L+RR IL+ G L LL G L PA Q+A PAG D PP+LFVHGNGDHA LWMT Sbjct: 1 MKLTRRTILKSMGTLPLLTGGLSLPAWGQAA-----PAGADLPPVLFVHGNGDHAALWMT 55 Query: 60 TFWRMESNGVPRARMAAINFTDPLARTDDKIEQASRSSTEDQRRELAEAIRELKQTTGAP 119 T WRMESNGVPR +AA+NFTDPLAR DD + Q +RSST+DQRRELAEA++ LK+ TGA Sbjct: 56 TLWRMESNGVPRTHLAALNFTDPLARNDDAVAQPNRSSTDDQRRELAEAVKALKERTGAA 115 Query: 120 RVALVGSSRGGNAIRNYIKNGGGGDVSHAVLCGTPNHGVYAWDDGLGNEFNGRGPFLRGL 179 RVALVGSSRGGNAIRN +KNGGG DVSHAVLCGTPNHGV+ W+D +EFNGRGPFLRGL Sbjct: 116 RVALVGSSRGGNAIRNLVKNGGGADVSHAVLCGTPNHGVFDWEDSPNSEFNGRGPFLRGL 175 Query: 180 NEGDNEVTVGTLFLTLRSDGLDKYAQADGRFVGKPGTPTNVTTEGPALKGATNLVLGAVD 239 N GD+EVT GT F+TLRSDGLDKYAQADGR +GKPG PT +T +GPALKGATNLV+GA+D Sbjct: 176 NAGDSEVTAGTAFMTLRSDGLDKYAQADGRLLGKPGVPTGITADGPALKGATNLVIGALD 235 Query: 240 HRETAFHPRAFREIYRFIARHEPSRIGIVPETAVRLSGLVTGMPGGVPTNRPVPGATVDI 299 HRE AFHPRAFREIY+FIA EP+ I I PE VR+SGLVTG PGG PTNRPV GA+V++ Sbjct: 236 HREVAFHPRAFREIYKFIAGREPALIAIQPEREVRISGLVTGTPGGAPTNRPVAGASVEV 295 Query: 300 YHVAAETGERIGGPLHSSQTGADGHWGPAQLDPSWPLEFVLTSPGTATTHIYRSPFPRSS 359 Y +AAET R G P++ QTGADG WGPA++DP+ +E VLTSPG TH YRSPFPRSS Sbjct: 296 YRIAAETRARNGEPVYRGQTGADGRWGPAEIDPASYIEIVLTSPGAPITHFYRSPFPRSS 355 Query: 360 EIVHLRAARPLGPADAGAGAVVLMSRPRGYFGLPRDIVLFDGKEPADVKPGVPTDSVTTL 419 ++VHLRAARPLG ADAGAGA+V+M+RPRGYFGLPRDIVL DGKEPAD++ GVPTD+ TTL Sbjct: 356 DVVHLRAARPLGQADAGAGAIVIMARPRGYFGLPRDIVLLDGKEPADIQKGVPTDAATTL 415 Query: 420 RPTADDVGRPVAAIFNGERIMMRAWPASENRIAVAELT 457 R A +VGR V +FN ERI R WPASE+RIAV ELT Sbjct: 416 RLPAGEVGRSVTGLFNEERIAARLWPASESRIAVIELT 453 >ref|YP_001202492.1| putative hydrolase [Bradyrhizobium sp. ORS 278] emb|CAL74242.1| conserved hypothetical protein; putative hydrolase [Bradyrhizobium sp. ORS 278] Length = 455 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/457 (72%), Positives = 372/457 (81%), Gaps = 3/457 (0%) Query: 1 MALSRRRILQGAGVLSLLAGRLGAPALAQSASAQPVPAGDTPPILFVHGNGDHAPLWMTT 60 M L+RR ILQ G L LL L L A PA D PP+LFVHGNGDHA LW+T+ Sbjct: 1 MKLTRRTILQSMGTLPLLTSGL---TLPALAQTAAAPASDMPPVLFVHGNGDHAALWITS 57 Query: 61 FWRMESNGVPRARMAAINFTDPLARTDDKIEQASRSSTEDQRRELAEAIRELKQTTGAPR 120 WRMESNGVPRAR+AA+NFTDPLAR DD + Q +RSST+DQRREL EAI+ LK+ TGA R Sbjct: 58 LWRMESNGVPRARLAALNFTDPLARNDDAVAQPNRSSTDDQRRELTEAIKALKERTGAAR 117 Query: 121 VALVGSSRGGNAIRNYIKNGGGGDVSHAVLCGTPNHGVYAWDDGLGNEFNGRGPFLRGLN 180 VALVGSSRGGNAIRN +KNGGGGDVSHAVLCGTPNHGV+ WDD G+EFNGRGPFLRGLN Sbjct: 118 VALVGSSRGGNAIRNVVKNGGGGDVSHAVLCGTPNHGVFDWDDSPGSEFNGRGPFLRGLN 177 Query: 181 EGDNEVTVGTLFLTLRSDGLDKYAQADGRFVGKPGTPTNVTTEGPALKGATNLVLGAVDH 240 GD+EVT GT FLTLRSDGLDKYAQADGR VGKPG PT +TTEGPALKGATNLV+GA+DH Sbjct: 178 SGDSEVTDGTAFLTLRSDGLDKYAQADGRLVGKPGVPTGITTEGPALKGATNLVIGALDH 237 Query: 241 RETAFHPRAFREIYRFIARHEPSRIGIVPETAVRLSGLVTGMPGGVPTNRPVPGATVDIY 300 RE AFHPRAFREIY+FIA EPS I I PE VR+SGLVTG PGG PTNRPV GATV++Y Sbjct: 238 REVAFHPRAFREIYKFIAGREPSFIAIQPEREVRISGLVTGTPGGAPTNRPVAGATVEVY 297 Query: 301 HVAAETGERIGGPLHSSQTGADGHWGPAQLDPSWPLEFVLTSPGTATTHIYRSPFPRSSE 360 V+ ETG R G P++ QTG+DG WGPA++DP+ +E VLTSPG TH YRSPFPRSS+ Sbjct: 298 RVSGETGARNGEPVYRGQTGSDGRWGPAEIDPASYIEIVLTSPGAPITHFYRSPFPRSSD 357 Query: 361 IVHLRAARPLGPADAGAGAVVLMSRPRGYFGLPRDIVLFDGKEPADVKPGVPTDSVTTLR 420 +VHLRAARPLG ADAGAGA+V+M+RPRGYFGLPRDIVL DG+EPADV+ GVPTD+ TTLR Sbjct: 358 VVHLRAARPLGQADAGAGAIVIMARPRGYFGLPRDIVLLDGREPADVQKGVPTDAATTLR 417 Query: 421 PTADDVGRPVAAIFNGERIMMRAWPASENRIAVAELT 457 A +VGR V +FN ERI R WPASE+RI + ELT Sbjct: 418 LPAGEVGRSVTGLFNEERITARLWPASESRITMIELT 454 >ref|YP_567825.1| twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB5] gb|ABE37924.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB5] Length = 475 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/456 (71%), Positives = 363/456 (79%), Gaps = 5/456 (1%) Query: 4 SRRRILQGAGVLSLLAGRLGAPALAQSASAQPVPAGDTP--PILFVHGNGDHAPLWMTTF 61 +RR IL+ G L L LG P L A + PA +TP PILFVHGNGDHA LW+T Sbjct: 22 TRRSILKALGALPLA---LGGPTLQAFAQSPAAPALETPVPPILFVHGNGDHAALWITQM 78 Query: 62 WRMESNGVPRARMAAINFTDPLARTDDKIEQASRSSTEDQRRELAEAIRELKQTTGAPRV 121 WRMESNGV R R+AA+NFTDPLAR DD + Q RSSTEDQRREL AI +LK+ TGA +V Sbjct: 79 WRMESNGVARQRLAAVNFTDPLARNDDTVSQPDRSSTEDQRRELGAAIADLKRRTGAAKV 138 Query: 122 ALVGSSRGGNAIRNYIKNGGGGDVSHAVLCGTPNHGVYAWDDGLGNEFNGRGPFLRGLNE 181 ALV SSRGGNA+R+ IK G DVSHAVLCGTPNHGVYAWD GLGNEFNG+GPFLRGLN+ Sbjct: 139 ALVASSRGGNAVRSLIKAGAAADVSHAVLCGTPNHGVYAWDAGLGNEFNGKGPFLRGLND 198 Query: 182 GDNEVTVGTLFLTLRSDGLDKYAQADGRFVGKPGTPTNVTTEGPALKGATNLVLGAVDHR 241 G +EVT G FLTLRSDG+DKYAQ DGRFVGKPGTPT VT EGP L+GATNLVLGA+DHR Sbjct: 199 GASEVTEGVAFLTLRSDGIDKYAQPDGRFVGKPGTPTGVTVEGPELRGATNLVLGALDHR 258 Query: 242 ETAFHPRAFREIYRFIARHEPSRIGIVPETAVRLSGLVTGMPGGVPTNRPVPGATVDIYH 301 E AFHPRAFREIY+FIA EPS I I PE AV+LSGLVTG PGGVPTNRPVP A V+++ Sbjct: 259 EVAFHPRAFREIYKFIAGREPSLIAIAPEQAVKLSGLVTGTPGGVPTNRPVPDAIVEVFR 318 Query: 302 VAAETGERIGGPLHSSQTGADGHWGPAQLDPSWPLEFVLTSPGTATTHIYRSPFPRSSEI 361 VA ++GERIG L+S +TGADG WGP P WPLEFVLTSP A THIYRSPFPRSS++ Sbjct: 319 VAPDSGERIGAALYSGKTGADGRWGPVDTQPPWPLEFVLTSPDAAITHIYRSPFPRSSDV 378 Query: 362 VHLRAARPLGPADAGAGAVVLMSRPRGYFGLPRDIVLFDGKEPADVKPGVPTDSVTTLRP 421 VHLRAA+P P DAG GAVV+MSRPRGYFGLPRD+VL DGK+P DV PGVPTDSVTTL+ Sbjct: 379 VHLRAAKPATPPDAGVGAVVMMSRPRGYFGLPRDVVLLDGKQPTDVNPGVPTDSVTTLKL 438 Query: 422 TADDVGRPVAAIFNGERIMMRAWPASENRIAVAELT 457 A + GR V +FN ERI+ RAWP SENR+ VAELT Sbjct: 439 PASEAGRAVVGLFNEERIVARAWPLSENRVTVAELT 474 >ref|YP_483740.1| twin-arginine translocation pathway signal [Rhodopseudomonas palustris HaA2] gb|ABD04829.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris HaA2] Length = 457 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/457 (70%), Positives = 360/457 (78%), Gaps = 1/457 (0%) Query: 1 MALSRRRILQGAGVLSLLAGRLGAPALAQSASAQPVPAGDTPPILFVHGNGDHAPLWMTT 60 M SRR IL+G G L L+ G A AQ A P PPILFVHGNGDHA LW+T Sbjct: 1 MHSSRRSILKGLGALPLVFGGPSLRAFAQGPVAAS-PETPVPPILFVHGNGDHAALWITQ 59 Query: 61 FWRMESNGVPRARMAAINFTDPLARTDDKIEQASRSSTEDQRRELAEAIRELKQTTGAPR 120 WRMESNG+ R R+AA+NFTDPLARTDD + Q RSSTEDQRREL AI ELK+ TGA + Sbjct: 60 IWRMESNGIARLRLAALNFTDPLARTDDGVAQPDRSSTEDQRRELGVAIAELKRRTGAAK 119 Query: 121 VALVGSSRGGNAIRNYIKNGGGGDVSHAVLCGTPNHGVYAWDDGLGNEFNGRGPFLRGLN 180 VALV SSRGGNA+RNYIK GG DVSHAVLCGTPNHGVYAWD GLGNEFNG+GPFLRGLN Sbjct: 120 VALVASSRGGNAVRNYIKVGGAADVSHAVLCGTPNHGVYAWDAGLGNEFNGKGPFLRGLN 179 Query: 181 EGDNEVTVGTLFLTLRSDGLDKYAQADGRFVGKPGTPTNVTTEGPALKGATNLVLGAVDH 240 EG++EVT G FLTLRSDGLDKYAQADGRF+GKPGTPT VT EGP L+GATNL L A+DH Sbjct: 180 EGESEVTPGVAFLTLRSDGLDKYAQADGRFLGKPGTPTGVTAEGPELRGATNLALSALDH 239 Query: 241 RETAFHPRAFREIYRFIARHEPSRIGIVPETAVRLSGLVTGMPGGVPTNRPVPGATVDIY 300 RE AFHPRAFREIY+FIA EP I I PE V+LSGLVT PGGVPTNRPV GA V+++ Sbjct: 240 REVAFHPRAFREIYKFIAGREPDLIAIAPERTVQLSGLVTATPGGVPTNRPVAGAGVEVF 299 Query: 301 HVAAETGERIGGPLHSSQTGADGHWGPAQLDPSWPLEFVLTSPGTATTHIYRSPFPRSSE 360 VA ++GERIG L+S +TG DG WGP P WPLEFVL+ PG THIYRSPFPRSS+ Sbjct: 300 RVAPDSGERIGAALYSGKTGPDGRWGPVDTQPPWPLEFVLSQPGEMITHIYRSPFPRSSD 359 Query: 361 IVHLRAARPLGPADAGAGAVVLMSRPRGYFGLPRDIVLFDGKEPADVKPGVPTDSVTTLR 420 +VHLRAARP +A GAVV++SRPRGYFGLPRDIVL DG++PADVKPGVPTD++TT + Sbjct: 360 VVHLRAARPAAKPEAETGAVVMLSRPRGYFGLPRDIVLLDGQQPADVKPGVPTDALTTAK 419 Query: 421 PTADDVGRPVAAIFNGERIMMRAWPASENRIAVAELT 457 A +VGR VA FN ERI+ RAWP +ENR+ VAELT Sbjct: 420 LPASEVGRAVAGHFNEERIVARAWPLAENRVIVAELT 456