BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0039.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767182.1| hypothetical protein bll0542 [Bradyrhizobium ja... 373 e-101 ref|YP_002299249.1| hypothetical protein RC1_3071 [Rhodospirillu... 285 4e-75 ref|YP_771134.1| hypothetical protein pRL110102 [Rhizobium legum... 223 2e-56 ref|ZP_01155324.1| hypothetical protein OG2516_05483 [Oceanicola... 216 2e-54 ref|ZP_01902932.1| hypothetical protein RAZWK3B_20411 [Roseobact... 212 5e-53 >ref|NP_767182.1| hypothetical protein bll0542 [Bradyrhizobium japonicum USDA 110] dbj|BAC45807.1| bll0542 [Bradyrhizobium japonicum USDA 110] Length = 299 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 180/244 (73%), Positives = 203/244 (83%), Gaps = 2/244 (0%) Query: 1 MTKAVFTSKVTPSYKDLPEERYHFPRTYLNYVQQTIGDYIVYYEPRRSSSDLSSRGGRQS 60 M+KAV T+KVTP YKDLPE RYHFPRTYLN V+Q +GDYI+YYEPRR++ +LSS GGRQS Sbjct: 1 MSKAVLTTKVTPGYKDLPEVRYHFPRTYLNQVRQAVGDYILYYEPRRTTVELSSFGGRQS 60 Query: 61 YFGVARVSSVIEDVELPDHYFAIIDSATYLDFDTVVPFQEQGEYYESALEKDDGSTNKGA 120 YFGVARV ++ED + DHY+A++D YLDFD VPF E G YYESAL K DGSTNKGA Sbjct: 61 YFGVARVVDLVEDKDQADHYYALVDD--YLDFDRPVPFVEGGHYYESALRKSDGSTNKGA 118 Query: 121 FGRAVRLIPDNEFDRILRAGFAPILGEVHSPEAPSPPGYSEPPTSFERPVVEMVVSRPFR 180 FGRAVRLIPD EFD+I +AGFAPILGE S P SEP FERP++EM +SRPFR Sbjct: 119 FGRAVRLIPDAEFDQIWKAGFAPILGEETSRHQPRQFEISEPTVPFERPIIEMTISRPFR 178 Query: 181 EKSFMHSVRAAYSNRCAITGLRLINGGGRPEVQAAHIQPVASNGPDSVRNGLALSGTVHW 240 E+SFM++VRAAY NRCA+TGLRLINGGGRPEVQAAHIQPVA GPDSVRNGLALSGTVHW Sbjct: 179 ERSFMYNVRAAYENRCAMTGLRLINGGGRPEVQAAHIQPVAEKGPDSVRNGLALSGTVHW 238 Query: 241 MFDR 244 MFDR Sbjct: 239 MFDR 242 >ref|YP_002299249.1| hypothetical protein RC1_3071 [Rhodospirillum centenum SW] gb|ACJ00437.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 305 Score = 285 bits (730), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 142/249 (57%), Positives = 180/249 (72%), Gaps = 9/249 (3%) Query: 3 KAVFTSKVTPSYKDLPEERYHFPRTYLNYVQQTIGDYIVYYEPRRSSSDLSSRGGRQSYF 62 KAVFT+KV P+Y DLPE RYHFPR YLN + +GD+I+YYEPRR+S +LSSRGGRQSYF Sbjct: 2 KAVFTTKVDPTYDDLPEFRYHFPRAYLNVAEAAVGDWIIYYEPRRTSGELSSRGGRQSYF 61 Query: 63 GVARVSSVIEDVELPDHYFAIIDSATYLDFDTVVPFQEQGEYYESALEKDDGSTNKGAFG 122 A+V+ ++ D LPDH++A + YL VPF+E YYE+AL +DDG TNKGAFG Sbjct: 62 ATAQVTQIVPDPSLPDHFYAFVRD--YLPLPRPVPFREGEHYYETALRRDDGQTNKGAFG 119 Query: 123 RAVRLIPDNEFDRILRAGFAPIL------GEVHSPEAPSPP-GYSEPPTSFERPVVEMVV 175 RAVR + D E+ IL AG A +L G P P +++ P +FERP+VE + Sbjct: 120 RAVRRLSDAEYLEILNAGMARLLDLPEPAGLAADPTTSVAPFQFADEPATFERPIVERLS 179 Query: 176 SRPFREKSFMHSVRAAYSNRCAITGLRLINGGGRPEVQAAHIQPVASNGPDSVRNGLALS 235 +RP R+ +F ++++AY CA+TGLRLINGGGR EVQAAHI+PVA++GPDS RNGLALS Sbjct: 180 TRPVRDAAFAAAIKSAYHETCAVTGLRLINGGGRSEVQAAHIRPVAADGPDSPRNGLALS 239 Query: 236 GTVHWMFDR 244 TVHWMFDR Sbjct: 240 ATVHWMFDR 248 >ref|YP_771134.1| hypothetical protein pRL110102 [Rhizobium leguminosarum bv. viciae 3841] emb|CAK03046.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 259 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 115/202 (56%), Positives = 143/202 (70%), Gaps = 16/202 (7%) Query: 56 GGRQSYFGVARVSSVIEDVELPDHYFAIIDSATYLDFDTVVPFQEQGEYYESALEKDDGS 115 GGRQ+YF AR++ +IED PDH++A+ID +L FD VVPF+E YYES L KDDGS Sbjct: 4 GGRQAYFATARITDIIEDPSKPDHFYALIDD--FLPFDHVVPFKEGDHYYESGLRKDDGS 61 Query: 116 TNKGAFGRAVRLIPDNEFDRILRAGFAPILGEVHSPEAPSPP-------GYSEPPT---- 164 TNKGAFGRAV I D E+D IL AGFA +L + E P+P G+ E P Sbjct: 62 TNKGAFGRAVGNISDAEYDLILAAGFAHVLAK-RDRERPAPDPVEEALIGFGENPQMPFE 120 Query: 165 --SFERPVVEMVVSRPFREKSFMHSVRAAYSNRCAITGLRLINGGGRPEVQAAHIQPVAS 222 S +R +V V+ RPFR+++F ++++AY + CA+TGL+LINGGGR EVQAAHI+PVA Sbjct: 121 IDSVDRRIVSQVLQRPFRDRAFSVAIKSAYQDTCAVTGLKLINGGGRSEVQAAHIRPVAD 180 Query: 223 NGPDSVRNGLALSGTVHWMFDR 244 PDSVRNGLALSGTVHWMFDR Sbjct: 181 RRPDSVRNGLALSGTVHWMFDR 202 >ref|ZP_01155324.1| hypothetical protein OG2516_05483 [Oceanicola granulosus HTCC2516] gb|EAR52534.1| hypothetical protein OG2516_05483 [Oceanicola granulosus HTCC2516] Length = 306 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 115/245 (46%), Positives = 149/245 (60%), Gaps = 9/245 (3%) Query: 1 MTKAVFTSKVTPSYKDLPEERYHFPRTYLNYVQQTIGDYIVYYEPRRSSSDLSSRGGRQS 60 M K V K Y D P+ Y FP+TYL V+ + D++VYYEP + G + Sbjct: 1 MVKLVLLHKAGSIYDDEPDVVYDFPQTYLKAVRAAVDDWVVYYEP--------VKAGPRG 52 Query: 61 YFGVARVSSVIEDVELPDHYFAIIDSATYLDFDTVVPFQEQGEYYESALEKDDGSTNKG- 119 YF VA++S VIE P Y A+I+ TYLDFD VP +G E+AL + DG+ +G Sbjct: 53 YFAVAKISQVIEKPGAPGRYLALIEPGTYLDFDAEVPRLVEGRPLEAALAEPDGTPKRGG 112 Query: 120 AFGRAVRLIPDNEFDRILRAGFAPILGEVHSPEAPSPPGYSEPPTSFERPVVEMVVSRPF 179 A AVR +P+++F RI+ G L + P +E SFERPV+E + RP+ Sbjct: 113 AVQLAVRRLPESDFARIVSLGLPQSLEAQEAARFDPEPAMAEDAASFERPVLERLTRRPY 172 Query: 180 REKSFMHSVRAAYSNRCAITGLRLINGGGRPEVQAAHIQPVASNGPDSVRNGLALSGTVH 239 R+ +F VR AY RCA++GLRL NGGGRPEVQAAHI+PV G D+VRNGLALSGT+H Sbjct: 173 RDVAFRRKVRDAYDFRCAMSGLRLRNGGGRPEVQAAHIRPVECQGSDAVRNGLALSGTLH 232 Query: 240 WMFDR 244 WMFDR Sbjct: 233 WMFDR 237 >ref|ZP_01902932.1| hypothetical protein RAZWK3B_20411 [Roseobacter sp. AzwK-3b] gb|EDM71753.1| hypothetical protein RAZWK3B_20411 [Roseobacter sp. AzwK-3b] Length = 305 Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 114/246 (46%), Positives = 147/246 (59%), Gaps = 10/246 (4%) Query: 1 MTKAVFTSKVTPSYKDLPEERYHFPRTYLNYVQQTIGDYIVYYEPRRSSSDLSSRGGRQS 60 M K V K Y D P++ Y FPR+YL V + + D+I+YYEP + GR+ Sbjct: 1 MVKLVLMHKADSIYDDEPDKVYDFPRSYLKAVSEAVDDWIIYYEP--------VKAGRRG 52 Query: 61 YFGVARVSSVIEDVELPDHYFAIIDSATYLDFDTVVPFQEQGEYYESALEKDDGSTNKG- 119 YF VA++ VI + Y A+I+ TYL FD VP + G E+AL + DGS KG Sbjct: 53 YFAVAKIGEVIAKPGVEGRYLALIEPGTYLPFDRSVPRLQGGSPLETALAEPDGSPKKGG 112 Query: 120 AFGRAVRLIPDNEFDRILRAGFAPILGEVHSPE-APSPPGYSEPPTSFERPVVEMVVSRP 178 A AVR +P+ +F RIL G L ++ + + P P + F RPV+E + RP Sbjct: 113 AVQLAVRRLPERDFARILDIGLPEDLEQIEATQYDPHPSDMQDQAAVFRRPVLERLTRRP 172 Query: 179 FREKSFMHSVRAAYSNRCAITGLRLINGGGRPEVQAAHIQPVASNGPDSVRNGLALSGTV 238 +R+ +F VR AY RCAI+GL L NGGGRPEVQAAHI+PV G DSVRNGLALSGT+ Sbjct: 173 YRDVAFRRKVREAYGYRCAISGLYLRNGGGRPEVQAAHIKPVEHQGSDSVRNGLALSGTL 232 Query: 239 HWMFDR 244 HWMFDR Sbjct: 233 HWMFDR 238