BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0033.p (454 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767178.1| hypothetical protein blr0538 [Bradyrhizobium ja... 866 0.0 ref|YP_001236455.1| hypothetical protein BBta_0254 [Bradyrhizobi... 790 0.0 ref|YP_001202470.1| putative Fe-S oxidoreductases [Bradyrhizobiu... 784 0.0 ref|YP_004865479.1| radical SAM superfamily protein [Micavibrio ... 605 e-171 ref|YP_001681936.1| radical SAM domain-containing protein [Caulo... 586 e-165 >ref|NP_767178.1| hypothetical protein blr0538 [Bradyrhizobium japonicum USDA 110] dbj|BAC45803.1| blr0538 [Bradyrhizobium japonicum USDA 110] Length = 481 Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/454 (91%), Positives = 434/454 (95%) Query: 1 VPTKIQISGNEVWYEKRCKQHGVQSTLVSTDAAYWRLCKDFIKPGDRPLAFQRHTEFGCP 60 VPTKIQI NEVWYEKRCK+HGVQSTLVSTDAAYWRLCKDFIKPGDRPL FQ TEFGCP Sbjct: 28 VPTKIQILDNEVWYEKRCKEHGVQSTLVSTDAAYWRLCKDFIKPGDRPLQFQHRTEFGCP 87 Query: 61 YDCGLCPDHEQHSCLALIEITEHCNLTCPVCFADSSPARTSFTPLAKIEKMLDALVASEG 120 YDCGLCPDHEQHSCLALIEITEHCNLTCPVCFA+S+PART FTPLA +EKMLDALVASEG Sbjct: 88 YDCGLCPDHEQHSCLALIEITEHCNLTCPVCFAESAPARTKFTPLATVEKMLDALVASEG 147 Query: 121 EPDLVQISGGEPTLHPDFFAILDAVRARPIRHVMINTNGLRIAREPDFVAKLAENRRGLE 180 EPDLVQISGGEPTLHPDFF ILDAVRARPIRHVMINTNGLRIARE DFVA+LAEN+RGLE Sbjct: 148 EPDLVQISGGEPTLHPDFFKILDAVRARPIRHVMINTNGLRIARERDFVARLAENKRGLE 207 Query: 181 VYLQFDSLQREALVNLRGADLRKIRQQALENLERHGVSTTLVATIKRGANDGEIGDIVRH 240 VYLQFDSLQR+AL+NLRGADLRKIRQQALENL+ +GVSTTLVATIKR ND EIGDIVRH Sbjct: 208 VYLQFDSLQRDALINLRGADLRKIRQQALENLDHYGVSTTLVATIKRRVNDAEIGDIVRH 267 Query: 241 ALTWKCVRGVTLQPVQDAGRNEHFDKDTDRIMLSEIRRRVIETGVFGADDMIPLPCNPES 300 ALTWKCVRGVTLQPVQDAGRNE+FD+ TDRIMLSEIR RV+ETGVFG DMIPLPCNPES Sbjct: 268 ALTWKCVRGVTLQPVQDAGRNENFDEKTDRIMLSEIRNRVVETGVFGDKDMIPLPCNPES 327 Query: 301 ISIGYGLRNGDKVLPLTSLIPQEQLIAVMPNTISPEKYPVLREKFVDLFSLSSGPLNTSE 360 ISIGYGLR G+KVLPLTSLIPQEQL+AVMPNTISPEKYP+LREKFVDLFSLSSGPLNTSE Sbjct: 328 ISIGYGLRTGEKVLPLTSLIPQEQLVAVMPNTISPEKYPMLREKFVDLFSLSSGPLNTSE 387 Query: 361 RVCELLCCLPSFEVPEGLTYENVFRVTIVQFLDRFNFCVGNVKRSCIHFVTESGAIIPFD 420 RVCELLCCLPSFEVPEGL+YENVFRVTIVQFLDRFNFCVGNVKRSCIHFVTE GAIIPFD Sbjct: 388 RVCELLCCLPSFEVPEGLSYENVFRVTIVQFLDRFNFCVGNVKRSCIHFVTEQGAIIPFD 447 Query: 421 TYNLFYRDGKIDGIRAAMAGQTYREARQSEEVRR 454 TYNLFYR+GKIDGIRAA+AG+TYREARQSEEV R Sbjct: 448 TYNLFYRNGKIDGIRAALAGETYREARQSEEVPR 481 >ref|YP_001236455.1| hypothetical protein BBta_0254 [Bradyrhizobium sp. BTAi1] gb|ABQ32549.1| hypothetical protein BBta_0254 [Bradyrhizobium sp. BTAi1] Length = 471 Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/439 (85%), Positives = 400/439 (91%) Query: 1 VPTKIQISGNEVWYEKRCKQHGVQSTLVSTDAAYWRLCKDFIKPGDRPLAFQRHTEFGCP 60 VPTKIQI NEVWYEKRCK HGVQSTLVS DAAYWR CK FIKPGD PL+FQR TE+GCP Sbjct: 28 VPTKIQIQDNEVWYEKRCKAHGVQSTLVSDDAAYWRRCKAFIKPGDTPLSFQRRTEYGCP 87 Query: 61 YDCGLCPDHEQHSCLALIEITEHCNLTCPVCFADSSPARTSFTPLAKIEKMLDALVASEG 120 YDCGLCPDHEQHSCLALIEIT+HCNLTCPVCFA+SSP R+ FTPLA +E+MLDALV SEG Sbjct: 88 YDCGLCPDHEQHSCLALIEITDHCNLTCPVCFAESSPQRSHFTPLATVERMLDALVKSEG 147 Query: 121 EPDLVQISGGEPTLHPDFFAILDAVRARPIRHVMINTNGLRIAREPDFVAKLAENRRGLE 180 EPDLVQISGGEPTLHPDFF IL AVRARPIRHVMINTNGLRIAREPDFVAKLAE +RGLE Sbjct: 148 EPDLVQISGGEPTLHPDFFDILAAVRARPIRHVMINTNGLRIAREPDFVAKLAETKRGLE 207 Query: 181 VYLQFDSLQREALVNLRGADLRKIRQQALENLERHGVSTTLVATIKRGANDGEIGDIVRH 240 VYLQFDSL R L N+RGADLR+IRQQALENLE G+STTLVATIKRG ND EIGDIVRH Sbjct: 208 VYLQFDSLSRAGLTNIRGADLRRIRQQALENLEHQGISTTLVATIKRGVNDDEIGDIVRH 267 Query: 241 ALTWKCVRGVTLQPVQDAGRNEHFDKDTDRIMLSEIRRRVIETGVFGADDMIPLPCNPES 300 AL W+CVRGVTLQPVQDAGRN FDKDTDRIMLSEIRRRV+ETGVFG DMIPLPCNPES Sbjct: 268 ALEWRCVRGVTLQPVQDAGRNADFDKDTDRIMLSEIRRRVVETGVFGEQDMIPLPCNPES 327 Query: 301 ISIGYGLRNGDKVLPLTSLIPQEQLIAVMPNTISPEKYPVLREKFVDLFSLSSGPLNTSE 360 ISIGYGLRNG VLPLT+++PQE+L++VMPNTISPEKYPVLR+KFV+LFSLSSGPLNTSE Sbjct: 328 ISIGYGLRNGTTVLPLTAMVPQEELLSVMPNTISPEKYPVLRDKFVELFSLSSGPLNTSE 387 Query: 361 RVCELLCCLPSFEVPEGLTYENVFRVTIVQFLDRFNFCVGNVKRSCIHFVTESGAIIPFD 420 RV E LCCLPS +VP+ L YE+VFRVTIVQFLDRFNFCVGNVKRSCIHFVTE G IIPFD Sbjct: 388 RVAEFLCCLPSVQVPDNLGYEHVFRVTIVQFLDRFNFCVGNVKRSCIHFVTERGEIIPFD 447 Query: 421 TYNLFYRDGKIDGIRAAMA 439 TYNLFYR+G IDGIRA +A Sbjct: 448 TYNLFYRNGAIDGIRARLA 466 >ref|YP_001202470.1| putative Fe-S oxidoreductases [Bradyrhizobium sp. ORS 278] emb|CAL74220.1| conserved hypothetical protein; putative predicted Fe-S oxidoreductases [Bradyrhizobium sp. ORS 278] Length = 470 Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/443 (83%), Positives = 402/443 (90%), Gaps = 1/443 (0%) Query: 1 VPTKIQISGNEVWYEKRCKQHGVQSTLVSTDAAYWRLCKDFIKPGDRPLAFQRHTEFGCP 60 VPTKIQI NEVWYEKRC+QHGVQ+TL+S DAAYWR CK FIKPGD PL+FQR TE+GCP Sbjct: 28 VPTKIQIVDNEVWYEKRCRQHGVQTTLISDDAAYWRRCKSFIKPGDTPLSFQRRTEYGCP 87 Query: 61 YDCGLCPDHEQHSCLALIEITEHCNLTCPVCFADSSPARTSFTPLAKIEKMLDALVASEG 120 YDCGLCPDHEQHSCLALIEIT+HCNLTCPVCFA+SSP R F+PLA +E+MLDALV SEG Sbjct: 88 YDCGLCPDHEQHSCLALIEITDHCNLTCPVCFAESSPQRAHFSPLATVERMLDALVQSEG 147 Query: 121 EPDLVQISGGEPTLHPDFFAILDAVRARPIRHVMINTNGLRIAREPDFVAKLAENRRGLE 180 EPDLVQISGGEPTLHP+FF IL AVRARPIRHVMINTNGLRIAREPDFV++LAE +RGLE Sbjct: 148 EPDLVQISGGEPTLHPEFFDILAAVRARPIRHVMINTNGLRIAREPDFVSRLAETKRGLE 207 Query: 181 VYLQFDSLQREALVNLRGADLRKIRQQALENLERHGVSTTLVATIKRGANDGEIGDIVRH 240 VYLQFDSL R L N+RGADLR+IRQQALENLER G+STTLVATIKRG ND EIGDIVRH Sbjct: 208 VYLQFDSLSRAGLTNIRGADLRRIRQQALENLERAGISTTLVATIKRGVNDDEIGDIVRH 267 Query: 241 ALTWKCVRGVTLQPVQDAGRNEHFDKDTDRIMLSEIRRRVIETGVFGADDMIPLPCNPES 300 AL W CVRGVTLQPVQDAGRN F+K+TDRIMLSEIRRRVIETGVFG DMIPLPCNPES Sbjct: 268 ALQWSCVRGVTLQPVQDAGRNADFNKETDRIMLSEIRRRVIETGVFGDQDMIPLPCNPES 327 Query: 301 ISIGYGLRNGDKVLPLTSLIPQEQLIAVMPNTISPEKYPVLREKFVDLFSLSSGPLNTSE 360 ISIGYGLRNG VLPLTS++PQE+L++VMPNTISPEKYPVLREKFV+LFSLSSGPLNT E Sbjct: 328 ISIGYGLRNGTTVLPLTSMVPQEELLSVMPNTISPEKYPVLREKFVELFSLSSGPLNTGE 387 Query: 361 RVCELLCCLPSFEVPEGLTYENVFRVTIVQFLDRFNFCVGNVKRSCIHFVTESGAIIPFD 420 RV E LCCLPS +VP+ L YE+VFRVTIVQFLDRFNFCVGNVKRSCIHFVTE G IIPFD Sbjct: 388 RVAEFLCCLPSVQVPDNLGYEHVFRVTIVQFLDRFNFCVGNVKRSCIHFVTERGEIIPFD 447 Query: 421 TYNLFYRDGKIDGIRAAMA-GQT 442 TYNLFYR+G IDGIRA +A GQT Sbjct: 448 TYNLFYRNGAIDGIRARLAEGQT 470 >ref|YP_004865479.1| radical SAM superfamily protein [Micavibrio aeruginosavorus ARL-13] gb|AEP09477.1| radical SAM superfamily protein [Micavibrio aeruginosavorus ARL-13] Length = 470 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 281/441 (63%), Positives = 349/441 (79%), Gaps = 1/441 (0%) Query: 1 VPTKIQISGNEVWYEKRCKQHGVQSTLVSTDAAYWRLCKDFIKPGDRPLAFQRHTEFGCP 60 VP KI I N+V+Y+KRCK HGVQ T +S+D+AY++ CKDFIKPGDRP +Q TE+GCP Sbjct: 28 VPAKILIEDNDVFYQKRCKTHGVQKTKISSDSAYFKWCKDFIKPGDRPHKYQTRTEYGCP 87 Query: 61 YDCGLCPDHEQHSCLALIEITEHCNLTCPVCFADSSPARTSFTPLAKIEKMLDALVASEG 120 DCGLC DHEQHSCLALIE+ E CNL CPVCFA+SSPAR L +IE ++DALV SEG Sbjct: 88 LDCGLCADHEQHSCLALIEVNEECNLECPVCFAESSPARKKNLSLEQIESIMDALVESEG 147 Query: 121 EPDLVQISGGEPTLHPDFFAILDAVRARPIRHVMINTNGLRIAREPDFVAKLAENRRGLE 180 EPD++QISGGEPT+HP IL + +PIRH+MINTNG+R+AR+ DFV +L++ G E Sbjct: 148 EPDVLQISGGEPTIHPQILDILKLAKTKPIRHLMINTNGVRLARDRDFVQELSKLSPGFE 207 Query: 181 VYLQFDSLQREALVNLRGADLRKIRQQALENLERHGVSTTLVATIKRGANDGEIGDIVRH 240 +YLQFDSL++ AL NLRG DLR IR+ AL+NLE+ +STTLV T+K+G ND EIG I+ H Sbjct: 208 IYLQFDSLEKSALENLRGIDLRTIRRMALDNLEKFNISTTLVVTVKKGVNDHEIGAIIDH 267 Query: 241 ALTWKCVRGVTLQPVQDAGRNEHFDKDTDRIMLSEIRRRVIE-TGVFGADDMIPLPCNPE 299 AL +KCVRG+T QPVQDAGRNE F+K+ DR +L++IRR + E + +F +D+IPLPCNPE Sbjct: 268 ALNYKCVRGITFQPVQDAGRNEKFNKNEDRFLLTDIRRAIYEQSDIFAPEDIIPLPCNPE 327 Query: 300 SISIGYGLRNGDKVLPLTSLIPQEQLIAVMPNTISPEKYPVLREKFVDLFSLSSGPLNTS 359 SISI YGLR+G K+ P+TSLIPQE+LIA +PN +S EK L++K +DLFSLSSG LNT+ Sbjct: 328 SISIAYGLRDGRKITPVTSLIPQEELIAEVPNAVSFEKNLDLKQKVIDLFSLSSGDLNTA 387 Query: 360 ERVCELLCCLPSFEVPEGLTYENVFRVTIVQFLDRFNFCVGNVKRSCIHFVTESGAIIPF 419 ER+ LLCCLP + L YEN+FR+TIVQFLDR+NFCVGNVKRSCIHFVT IIPF Sbjct: 388 ERMESLLCCLPEVPALKNLGYENIFRITIVQFLDRYNFCVGNVKRSCIHFVTPEKQIIPF 447 Query: 420 DTYNLFYRDGKIDGIRAAMAG 440 DTYNLFYR+G + +R + G Sbjct: 448 DTYNLFYRNGLVHDMRKRIRG 468 >ref|YP_001681936.1| radical SAM domain-containing protein [Caulobacter sp. K31] gb|ABZ69438.1| Radical SAM domain protein [Caulobacter sp. K31] Length = 481 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 273/427 (63%), Positives = 330/427 (77%) Query: 1 VPTKIQISGNEVWYEKRCKQHGVQSTLVSTDAAYWRLCKDFIKPGDRPLAFQRHTEFGCP 60 VP KI V+Y KRC++HGVQ TL++ D YW+ KD++KPGDRPLA Q T+ GCP Sbjct: 38 VPAKIIAEDERVYYLKRCREHGVQKTLIADDLGYWKAQKDWLKPGDRPLAVQTRTDHGCP 97 Query: 61 YDCGLCPDHEQHSCLALIEITEHCNLTCPVCFADSSPARTSFTPLAKIEKMLDALVASEG 120 YDCGLCPDHEQHSCLA++EI E CNLTCPVCFA SS + + PLA++E+MLD +VASEG Sbjct: 98 YDCGLCPDHEQHSCLAILEINEACNLTCPVCFAGSSTSLDAHRPLAEVERMLDVIVASEG 157 Query: 121 EPDLVQISGGEPTLHPDFFAILDAVRARPIRHVMINTNGLRIAREPDFVAKLAENRRGLE 180 EPDLVQ+SGGEPTLHP FF IL A RARPIRH+MINTNGLRIARE F +LA E Sbjct: 158 EPDLVQLSGGEPTLHPQFFEILSAARARPIRHLMINTNGLRIAREAGFAERLATYMPRFE 217 Query: 181 VYLQFDSLQREALVNLRGADLRKIRQQALENLERHGVSTTLVATIKRGANDGEIGDIVRH 240 VYLQFDSL+R+AL+ LRGADL K+R QALE LER+ + TTLV T+K+G ND EI DIVR Sbjct: 218 VYLQFDSLKRDALMQLRGADLVKVRTQALEALERNNIPTTLVVTLKKGVNDDEIADIVRF 277 Query: 241 ALTWKCVRGVTLQPVQDAGRNEHFDKDTDRIMLSEIRRRVIETGVFGADDMIPLPCNPES 300 ALTW+CVRGVT QP+QDAGRN+ F+ RI+L+E+RRR+ E GVF +D+IPLPCNP+ Sbjct: 278 ALTWRCVRGVTFQPIQDAGRNDGFEAKDHRIVLTEVRRRIAEAGVFALEDLIPLPCNPDQ 337 Query: 301 ISIGYGLRNGDKVLPLTSLIPQEQLIAVMPNTISPEKYPVLREKFVDLFSLSSGPLNTSE 360 I IGYGLRNG V P+TSL+P+E +A P+T++ E YP L++K DL SLS+ +TS+ Sbjct: 338 ICIGYGLRNGQSVAPVTSLLPRELFVAAAPSTVTFEAYPELQKKVFDLLSLSTAQADTSD 397 Query: 361 RVCELLCCLPSFEVPEGLTYENVFRVTIVQFLDRFNFCVGNVKRSCIHFVTESGAIIPFD 420 ++ LLCCLP VPE L YE+ FRV I QFLDR+NF +G VKRSC+HFV G IIPFD Sbjct: 398 KLAGLLCCLPEAVVPESLAYEHTFRVVISQFLDRYNFDLGTVKRSCVHFVEPDGRIIPFD 457 Query: 421 TYNLFYR 427 TYN FYR Sbjct: 458 TYNTFYR 464