BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0027.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773612.1| transcriptional regulator [Bradyrhizobium japon... 389 e-106 ref|YP_766237.1| GerE family transcriptional regulator [Rhizobiu... 177 1e-42 ref|YP_002974130.1| LuxR family transcriptional regulator [Rhizo... 169 3e-40 ref|YP_002279776.1| LuxR family transcriptional regulator [Rhizo... 165 4e-39 ref|YP_001976838.1| transcriptional regulator protein, LuxR fami... 164 9e-39 >ref|NP_773612.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC52237.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 261 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 197/241 (81%), Positives = 208/241 (86%), Gaps = 3/241 (1%) Query: 1 VIIEQHLLPRTCILNVLRRELADFEILDMATVQGLDCMSARDVRLVLLSIADKPIVDPSV 60 VIIE +LPRTCIL+VLRREL + EILDMATVQGLDC SARDVRLV+LSIADKPI DPSV Sbjct: 21 VIIEPLVLPRTCILHVLRRELDELEILDMATVQGLDCTSARDVRLVMLSIADKPIGDPSV 80 Query: 61 EDDLAFVAEQCPNAAVAILSNHDDEPTAQAAMQRGVRGFLPTSLPIEVVIAGLRLVLVGG 120 EDDLAFVAE CPNAA +LSNHDDEPT QAAMQRGVRGFL TSLPIE+ IAGLRLVLVGG Sbjct: 81 EDDLAFVAECCPNAATVVLSNHDDEPTVQAAMQRGVRGFLSTSLPIEIAIAGLRLVLVGG 140 Query: 121 VYRPLPVAEMNRMPGFDPPDARGLASAYLMNEAARTAIDR---SGLTPREQHVLAELELG 177 YRPLPVA MNR+ F+PPDARGL AYL+NE AR AIDR + LTPREQ VLAELELG Sbjct: 141 AYRPLPVARMNRITDFEPPDARGLVPAYLINEGARVAIDRRSVTDLTPREQQVLAELELG 200 Query: 178 LPNKLIAAKLKLSESTVKMHIQHIMRKCAAHNRTEAVLRWRGRSLPQNRDQDPATAPMPE 237 LPNKLIAAKL LSESTVKMHIQHIMRKCAAHNRTEAVLRWRGR Q+RD DP A MPE Sbjct: 201 LPNKLIAAKLGLSESTVKMHIQHIMRKCAAHNRTEAVLRWRGRLPAQSRDHDPGAALMPE 260 Query: 238 T 238 T Sbjct: 261 T 261 >ref|YP_766237.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] emb|CAK06121.1| putative GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 254 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 99/217 (45%), Positives = 133/217 (61%), Gaps = 5/217 (2%) Query: 1 VIIEQHLLPRTCILNVLRRELADFEILDMATVQGLDCMSARDVRLVLLSIADKPIVDPSV 60 +IIE L RT ++ +L RELA + ++D+ + + LD +VRL++L +A + + S+ Sbjct: 28 IIIEHSTLARTTVVKLLERELAGWNVIDLISTESLDSALGAEVRLIVLGLAGRSVESTSL 87 Query: 61 EDDLAFVAEQCPNAAVAILSNHDDEPTAQAAMQRGVRGFLPTSLPIEVVIAGLRLVLVGG 120 DDLA +A +CP A V +LS DD A+ A++ G+RGF TSLP+++ +AGLRLVL GG Sbjct: 88 RDDLAAIAARCPEAPVTLLSGTDDAIIARQALKMGIRGFFSTSLPVDIALAGLRLVLAGG 147 Query: 121 VYRP-LPVAEMNRMPGFDPPDARGLASAYLMNEAARTAIDRSGLTPREQHVLAELELGLP 179 + P L A N P AR A L + AI + TPRE VLAEL+ G Sbjct: 148 TFFPQLLGAGTNGSSEHSP--ARSEAEKSLDDRTQYLAI--ADFTPREADVLAELQCGCS 203 Query: 180 NKLIAAKLKLSESTVKMHIQHIMRKCAAHNRTEAVLR 216 NK+IA KL LS TVKMH+QHIMRK A NRTE V R Sbjct: 204 NKVIAGKLNLSGHTVKMHLQHIMRKLQAQNRTEVVAR 240 >ref|YP_002974130.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS54591.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 245 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/222 (41%), Positives = 133/222 (59%), Gaps = 15/222 (6%) Query: 1 VIIEQHLLPRTCILNVLRRELADFEILDMATVQGLDCMSARDVRLVLLSIADKPIVDPSV 60 +IIE L RT ++ +L RELA + ++D+ + + L+ +VRL++L +A + + S+ Sbjct: 19 IIIEHSTLARTTVVKLLERELAGWNVIDLISTESLESALGAEVRLIVLGLAGRSVESTSL 78 Query: 61 EDDLAFVAEQCPNAAVAILSNHDDEPTAQAAMQRGVRGFLPTSLPIEVVIAGLRLVLVGG 120 DDLA +A + P A V +LS DD A+ A++ G+RG TSLPI++ +AGLRLVL GG Sbjct: 79 RDDLAAIAARFPEAPVTLLSGTDDAIIARQALKMGLRGLFSTSLPIDIALAGLRLVLAGG 138 Query: 121 VYRPLPVAEMNRMPGFDPPDARGLASAYLMNEAARTAIDRS------GLTPREQHVLAEL 174 + P + + +P P + NEA ++ +R+ TPRE VLAEL Sbjct: 139 TFFPQLLGAVTAVPNDHTP---------VRNEAEKSLDERTQYLAIADFTPREADVLAEL 189 Query: 175 ELGLPNKLIAAKLKLSESTVKMHIQHIMRKCAAHNRTEAVLR 216 + G NK+IA KL LS TVKMH+QHIMRK A NRTE V R Sbjct: 190 QCGCSNKVIAGKLNLSGHTVKMHLQHIMRKLQAQNRTEVVAR 231 >ref|YP_002279776.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI53550.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 260 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 131/218 (60%), Gaps = 4/218 (1%) Query: 1 VIIEQHLLPRTCILNVLRRELADFEILDMATVQGLDCMSARDVRLVLLSIADKPIVDPSV 60 +IIE L RT ++ +L RELA + ++D+++ + LD +VRL+ L +A + + S+ Sbjct: 31 IIIEHSTLARTTVVKLLERELAGWNLIDLSSTESLDRALGAEVRLIALDLAGRGVESASL 90 Query: 61 EDDLAFVAEQCPNAAVAILSNHDDEPTAQAAMQRGVRGFLPTSLPIEVVIAGLRLVLVGG 120 DDLA + + P + +LS+ DD A+ A++ G+RGF TSLPI++ +AGLRLVL GG Sbjct: 91 RDDLAAITARFPEVPITLLSSTDDAIIARQALKIGIRGFFSTSLPIDIALAGLRLVLAGG 150 Query: 121 VYRP-LPVAEMNRMPGFDPPD-ARGLASAYLMNEAARTAIDRSGLTPREQHVLAELELGL 178 + P L A N G + AR A L A+ + TPRE VLAEL+ G Sbjct: 151 TFFPQLLGAATNGSNGSNEHSPARNEAEKSLDERTQYLAL--AEFTPREADVLAELQSGC 208 Query: 179 PNKLIAAKLKLSESTVKMHIQHIMRKCAAHNRTEAVLR 216 NK+IA KL LS TVKMH+QHIMRK A NRTE V R Sbjct: 209 SNKVIAGKLNLSGHTVKMHLQHIMRKLQAQNRTEVVAR 246 >ref|YP_001976838.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gb|ACE89660.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 255 Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 93/222 (41%), Positives = 129/222 (58%), Gaps = 15/222 (6%) Query: 1 VIIEQHLLPRTCILNVLRRELADFEILDMATVQGLDCMSARDVRLVLLSIADKPIVDPSV 60 ++I L RT ++ +L RELA + +D+ + + LD +VRL+ L +A + + S+ Sbjct: 29 IVIGNSTLTRTTVVKLLERELAGWNFIDLVSTESLDRALGAEVRLIALDLAGRAVESASL 88 Query: 61 EDDLAFVAEQCPNAAVAILSNHDDEPTAQAAMQRGVRGFLPTSLPIEVVIAGLRLVLVGG 120 DDLA +A + P+A + +LS DD A+ A++ G+RGF TSL +++ +AGLRLVL GG Sbjct: 89 SDDLAAIAARFPDAPITLLSGTDDAIIARQALKMGIRGFFSTSLAVDIALAGLRLVLAGG 148 Query: 121 VYRPLPVAEMNRMPGFDPPDARGLASAYLMNEAARTAIDRS------GLTPREQHVLAEL 174 + P V + P AR NEA R DR+ TPRE +LAEL Sbjct: 149 TFFPQLVGAVTNGSNEHGP-AR--------NEAERRLDDRTQYLAIADFTPREADILAEL 199 Query: 175 ELGLPNKLIAAKLKLSESTVKMHIQHIMRKCAAHNRTEAVLR 216 + G NK+IA KL LS TVKMH+QHIMRK A NRTE V R Sbjct: 200 QSGCSNKVIAGKLNLSGHTVKMHLQHIMRKLQAQNRTEVVAR 241