BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0024.p         (124 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001236452.1| hypothetical protein BBta_0251 [Bradyrhizobi...   142   1e-32
ref|NP_767175.1| two-component response regulator [Bradyrhizobiu...   138   3e-31
ref|YP_001202467.1| putative two-component response regulator [B...   135   3e-30
ref|YP_575994.1| response regulator receiver domain-containing p...   131   4e-29
ref|ZP_01044592.1| response regulator receiver [Nitrobacter sp. ...   120   1e-25

>ref|YP_001236452.1| hypothetical protein BBta_0251 [Bradyrhizobium sp. BTAi1]
 gb|ABQ32546.1| hypothetical protein BBta_0251 [Bradyrhizobium sp. BTAi1]
          Length = 124

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/111 (69%), Positives = 87/111 (78%), Gaps = 2/111 (1%)

Query: 12  DVLVVEDDPIISLYFEDTILGFGARTVRTAASVARALELIAERAPDFALLDVGLVRGEKT 71
           DVLVVEDDPII+L  EDTI   G   +R AA+VA AL +I ERAP FALLDVGLVR EK+
Sbjct: 14  DVLVVEDDPIIALGLEDTITDLGIAVIRVAANVASALAMIEERAPQFALLDVGLVR-EKS 72

Query: 72  FAIAERLDALKVPFAFVTGYGADIRLPASLADKPRLTKPCSSEALEAALRN 122
           FAIAERL  L +PFAF TGYGAD R+PA+ AD+PRL KPC +EALEA LR 
Sbjct: 73  FAIAERLTTLGIPFAFSTGYGAD-RVPAAFADRPRLPKPCPTEALEAVLRR 122


>ref|NP_767175.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC45800.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 144

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 95/117 (81%), Gaps = 1/117 (0%)

Query: 6   NAGMPGDVLVVEDDPIISLYFEDTILGFGARTVRTAASVARALELIAERAPDFALLDVGL 65
           ++ +P DVL+VEDDPII++ FED +LGFG R+VRT  SVA+AL  IA RAPDFALLDV L
Sbjct: 26  SSDVPADVLIVEDDPIIAIDFEDRLLGFGVRSVRTVGSVAQALAAIAARAPDFALLDVEL 85

Query: 66  VRGEKTFAIAERLDALKVPFAFVTGYGADIRLPASLADKPRLTKPCSSEALEAALRN 122
            R E +FA+AERL ALK+PF FVTGYGA+ R+ +   ++PRL KPCSS+ALEAALR+
Sbjct: 86  SR-ENSFAVAERLAALKIPFVFVTGYGAETRIASDFVNRPRLQKPCSSDALEAALRS 141


>ref|YP_001202467.1| putative two-component response regulator [Bradyrhizobium sp. ORS
           278]
 emb|CAL74217.1| conserved hypothetical protein; putative two-component response
           regulator [Bradyrhizobium sp. ORS 278]
          Length = 124

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 85/109 (77%), Gaps = 2/109 (1%)

Query: 13  VLVVEDDPIISLYFEDTILGFGARTVRTAASVARALELIAERAPDFALLDVGLVRGEKTF 72
           VLVVEDDPII+L  EDTI   G   VR AA+VA AL +I ERAP FALLDVGLVR EK+F
Sbjct: 15  VLVVEDDPIIALGLEDTITDLGVADVRVAANVATALAMIEERAPQFALLDVGLVR-EKSF 73

Query: 73  AIAERLDALKVPFAFVTGYGADIRLPASLADKPRLTKPCSSEALEAALR 121
           AIAERL+ L +PFAF TGYGAD  +P++ +D+PRL KPC +EALE  LR
Sbjct: 74  AIAERLNTLGIPFAFSTGYGAD-GVPSAFSDRPRLPKPCPTEALEVVLR 121


>ref|YP_575994.1| response regulator receiver domain-containing protein [Nitrobacter
           hamburgensis X14]
 gb|ABE61534.1| response regulator receiver domain protein (CheY-like) [Nitrobacter
           hamburgensis X14]
          Length = 139

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/116 (57%), Positives = 87/116 (75%), Gaps = 1/116 (0%)

Query: 9   MPGDVLVVEDDPIISLYFEDTILGFGARTVRTAASVARALELIAERAPDFALLDVGLVRG 68
           +PGDVL+VEDD II+L FE T+  FG  +VR A++VA+AL +IAERAPDFALLD+GL   
Sbjct: 20  IPGDVLIVEDDAIIALDFEQTVTEFGVTSVRIASNVAQALAMIAERAPDFALLDIGLFE- 78

Query: 69  EKTFAIAERLDALKVPFAFVTGYGADIRLPASLADKPRLTKPCSSEALEAALRNGH 124
           EK+FA+A+RL ALK PFAFVTGY  +   PA  +D+P+L+KP S + L A L +  
Sbjct: 79  EKSFAVAKRLAALKTPFAFVTGYSGERAFPAEYSDRPKLSKPFSCDELFAVLSDWR 134


>ref|ZP_01044592.1| response regulator receiver [Nitrobacter sp. Nb-311A]
 gb|EAQ37373.1| response regulator receiver [Nitrobacter sp. Nb-311A]
          Length = 138

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/116 (56%), Positives = 82/116 (70%), Gaps = 1/116 (0%)

Query: 7   AGMPGDVLVVEDDPIISLYFEDTILGFGARTVRTAASVARALELIAERAPDFALLDVGLV 66
           AG+P DVL+VEDD II++  E T+  FG  +VRT+++VA+AL +I ERAPDFALLDV L 
Sbjct: 17  AGIPRDVLIVEDDVIIAIDIEQTVAEFGVASVRTSSNVAQALAMITERAPDFALLDVSLS 76

Query: 67  RGEKTFAIAERLDALKVPFAFVTGYGADIRLPASLADKPRLTKPCSSEALEAALRN 122
             E +FAIA+ L ALKVPF FVTGY  D   PA  +D+ RL+KP   + L A L N
Sbjct: 77  E-ENSFAIAKVLAALKVPFVFVTGYSGDKAFPAEYSDRSRLSKPFLRDELFAILSN 131