BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0021.p         (212 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767579.1| hypothetical protein blr0939 [Bradyrhizobium ja...   159   2e-37
ref|YP_004011606.1| cell wall hydrolase/autolysin [Rhodomicrobiu...    96   5e-18
ref|ZP_07335039.1| cell wall hydrolase/autolysin [Desulfovibrio ...    81   9e-14
ref|YP_004369632.1| cell wall hydrolase/autolysin [Desulfobacca ...    81   1e-13
ref|YP_933730.1| N-acetylmuramoyl-L-alanine amidase [Azoarcus sp...    79   5e-13

>ref|NP_767579.1| hypothetical protein blr0939 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46204.1| blr0939 [Bradyrhizobium japonicum USDA 110]
          Length = 234

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 93/115 (80%)

Query: 98  AAAKCDPATFRIVLDVGHTAQSEGAISARNVAEFTFNLRLAKLIEQRLKAEGFAETRLLL 157
           ++AKC+   FRIV+DVGHT  S GA+SARN  EF FN RL +LI  +L+ +GFA  RLL+
Sbjct: 7   SSAKCEMPKFRIVVDVGHTPDSYGALSARNDPEFGFNFRLGRLITAKLRDQGFAAARLLV 66

Query: 158 TEGKARPSLFKRVAAANNLHADLLMSIHHDSVPNKMLEDWEFEDKKSHFSDRFSG 212
           T+GKARPSLFKRV+AAN+  ADLL+SIHHDSVP+K+LE WEF+   S+FSDRFSG
Sbjct: 67  TDGKARPSLFKRVSAANDGRADLLLSIHHDSVPDKLLETWEFDGAMSYFSDRFSG 121


>ref|YP_004011606.1| cell wall hydrolase/autolysin [Rhodomicrobium vannielii ATCC 17100]
 gb|ADP70507.1| cell wall hydrolase/autolysin [Rhodomicrobium vannielii ATCC 17100]
          Length = 255

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 1/111 (0%)

Query: 102 CDPATFRIVLDVGHTAQSEGAISARNVAEFTFNLRLAKLIEQRLKAEGFAETRLLLTEGK 161
           CD   F++ +DVGH+ Q+ GA SAR V+EF FN  L+K I + L + GF    +L   G 
Sbjct: 27  CDRENFKVAIDVGHSEQAPGATSARGVSEFYFNTELSKKIGEALTSSGF-RNAILNETGG 85

Query: 162 ARPSLFKRVAAANNLHADLLMSIHHDSVPNKMLEDWEFEDKKSHFSDRFSG 212
              SL +R   A+ L A+L +SIHHDSV  + L+ W F  +  ++ D FSG
Sbjct: 86  GVESLLRRARRASELQANLFISIHHDSVQKEYLKAWMFNGRTHYYYDGFSG 136


>ref|ZP_07335039.1| cell wall hydrolase/autolysin [Desulfovibrio fructosovorans JJ]
 gb|EFL49730.1| cell wall hydrolase/autolysin [Desulfovibrio fructosovorans JJ]
          Length = 250

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 98  AAAKCDPATFRIVLDVGHTAQSEGAISARNVAEFTFNLRLAKLIEQRLKAEGFAETRLLL 157
           A AKC PA   I +D GH  +  GA SA    E+ FNLRLAK +   LKA GF+   LL 
Sbjct: 25  AEAKCRPAALSIAVDAGHGPKISGATSATGQPEYAFNLRLAKQVVAALKAAGFSRAFLLD 84

Query: 158 TEGKARPSLFKRVAAANNLHADLLMSIHHDSVPNKMLEDWEFEDKKSHFSDRFSG 212
            +G   P   +   A       LL+SIHHDS   +  E W  + K   + DR+ G
Sbjct: 85  PKGADLPPAARAARANAAGAG-LLLSIHHDSAQPQFFETWTVDGKTRRYCDRYHG 138


>ref|YP_004369632.1| cell wall hydrolase/autolysin [Desulfobacca acetoxidans DSM 11109]
 gb|AEB08451.1| cell wall hydrolase/autolysin [Desulfobacca acetoxidans DSM 11109]
          Length = 255

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 66/121 (54%)

Query: 92  LSALKRAAAKCDPATFRIVLDVGHTAQSEGAISARNVAEFTFNLRLAKLIEQRLKAEGFA 151
           L  L   +  C      + +D+GHT +  GAISAR  AE+ FN  +A L+   L+ +   
Sbjct: 21  LGGLIWLSGDCWAKDAVVAIDIGHTPERPGAISARGRAEYLFNKTIAALVYTMLRGDQRF 80

Query: 152 ETRLLLTEGKARPSLFKRVAAANNLHADLLMSIHHDSVPNKMLEDWEFEDKKSHFSDRFS 211
           E   ++ E  +  SL  R A AN+  A+LL+SIHHDSV  K L  W F+ +   + D+F+
Sbjct: 81  EKSFIINETGSDISLAGRAALANSRAANLLVSIHHDSVEPKDLSLWCFQGEIMPYCDKFT 140

Query: 212 G 212
           G
Sbjct: 141 G 141


>ref|YP_933730.1| N-acetylmuramoyl-L-alanine amidase [Azoarcus sp. BH72]
 emb|CAL94843.1| N-acetylmuramoyl-L-alanine amidase [Azoarcus sp. BH72]
          Length = 262

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 2/106 (1%)

Query: 107 FRIVLDVGHTAQSEGAISARNVAEFTFNLRLAKLIEQRLKAEGFAETRLLLTEGKARPSL 166
            R+ +DVGHT  + GA SAR   EF+FNL LA  + Q L+  G    +++  +G    SL
Sbjct: 42  LRVAVDVGHTLAAPGARSARGRGEFSFNLALADAVAQALRDRGVV-VQVVNADGGI-GSL 99

Query: 167 FKRVAAANNLHADLLMSIHHDSVPNKMLEDWEFEDKKSHFSDRFSG 212
             R A A    ADLL+SIHHDSV  ++L  WE+  +   ++D ++G
Sbjct: 100 QDRPAEAATFGADLLLSIHHDSVGPQLLRTWEWAGRTEAYNDDYAG 145