BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0019.p (467 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767173.1| hypothetical protein blr0533 [Bradyrhizobium ja... 683 0.0 ref|YP_001202465.1| putative signal peptide [Bradyrhizobium sp. ... 671 0.0 ref|YP_001236450.1| hypothetical protein BBta_0249 [Bradyrhizobi... 662 0.0 ref|YP_781626.1| TRAP transporter solute receptor TAXI family pr... 633 e-179 ref|YP_532395.1| TRAP transporter solute receptor TAXI family pr... 603 e-170 >ref|NP_767173.1| hypothetical protein blr0533 [Bradyrhizobium japonicum USDA 110] dbj|BAC45798.1| blr0533 [Bradyrhizobium japonicum USDA 110] Length = 481 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/466 (72%), Positives = 395/466 (84%), Gaps = 3/466 (0%) Query: 3 DGSASMSPKPLRSAKRRLMFVLIAGALAIIGTLMAGYYFAVRPVTLRIAVGPANSDDLKV 62 D + + SP RSA R+ V +A LAI+G L GYYFA+RPV L+IAVGP NSDD+KV Sbjct: 18 DLAETPSPPSPRSAARKTALVSLALVLAIVGALAGGYYFAMRPVALKIAVGPPNSDDIKV 77 Query: 63 VQALAQAFNNQQQTQVKLRPVQTEGATASAQTLADGKADLAIIRGDLEVPKNAQAVATLR 122 VQAL QAF+ Q ++ V+LRP+QT+GATASA+ LA+GK DLAI+RGD++VPKNAQAVATLR Sbjct: 78 VQALTQAFS-QNKSYVRLRPIQTDGATASAEALAEGKVDLAIVRGDVDVPKNAQAVATLR 136 Query: 123 KNVVVMWVPPAKGKVRKSARITKIAQLAGRKIGVVGRTPANVNLLKLILTQYGVDPMKVE 182 KNVVV+W P K +K A+ITKIAQL G ++GVVGRT ANVNLLK+IL QYGVDP KVE Sbjct: 137 KNVVVLWSVPGK-GKKKGAKITKIAQLVGHRVGVVGRTQANVNLLKVILQQYGVDPAKVE 195 Query: 183 IVQFPANEAAEAIRNLKADAYLAVGPANSKITIDAITASVKNGGEPSFLAIDASEAIAQN 242 I+QFPANEAAEAI+ KADAYLA GP NSKIT DAI AS K+ G P+FLAID+++AIAQN Sbjct: 196 IIQFPANEAAEAIKAQKADAYLAAGPVNSKITSDAIAASAKDFGTPTFLAIDSADAIAQN 255 Query: 243 HPAYEAAEIPAGSLG-SADRPDDEVKTISFSHHIVARKGLSDSTVAAFTRQLFAIRQSLK 301 HP YEAAEIPAG+ G S DRP+DEVKTISF+HHIVARKG+S++T+AAFTRQLFA+RQ L Sbjct: 256 HPVYEAAEIPAGTYGGSPDRPEDEVKTISFAHHIVARKGVSETTIAAFTRQLFAVRQQLV 315 Query: 302 TDFPLAAKIETPDTDKDATIPVHPGAAAFVDGEEKTFLDRYSDYIWWSLMAFSAMGSAGA 361 T+FPLAAKIETPDTDKDA IPVHPGAAAFVDGEEKTFLDRYSDYIWW+LMA SAMGS GA Sbjct: 316 TEFPLAAKIETPDTDKDAVIPVHPGAAAFVDGEEKTFLDRYSDYIWWTLMALSAMGSIGA 375 Query: 362 WFAGYLKQDERNTNTSQRERLLEMLKAARQSDSIEELDQMQAEADDILRHTLDCFEHGAI 421 WFAGYLK+DER+ N+ R+RLL+M+ AAR+S++++ELDQMQ EAD+ILR TL C++HGAI Sbjct: 376 WFAGYLKKDERDNNSHLRDRLLDMIAAARKSETMDELDQMQTEADEILRDTLHCYDHGAI 435 Query: 422 EEGTLTAFNIALEQLHNAVADRKALLFSMPQNLQRTATQFRAAGTA 467 EEG LTAFNI L+Q H A+ADRKA+LFSMPQN R QFRAAG A Sbjct: 436 EEGALTAFNIVLDQFHAAIADRKAVLFSMPQNPPRAGAQFRAAGNA 481 >ref|YP_001202465.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL74215.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 448 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/449 (75%), Positives = 383/449 (85%), Gaps = 4/449 (0%) Query: 21 MFVLIAGALAIIGTLMAGYYFAVRPVTLRIAVGPANSDDLKVVQALAQAFNNQQQTQVKL 80 MF++IAG LAIIG L YYFA+RPV L+IAVGP NSDDLKVVQAL QAF+ Q V+L Sbjct: 1 MFIVIAGILAIIGALAGAYYFAMRPVVLKIAVGPPNSDDLKVVQALTQAFS-QNHAYVRL 59 Query: 81 RPVQTEGATASAQTLADGKADLAIIRGDLEVPKNAQAVATLRKNVVVMWVPPA-KGKVRK 139 RPV +EGA S Q LA GK DLAIIRGDLEVPKNAQAVATLRKNV V+WVP A KGK RK Sbjct: 60 RPVPSEGAAESGQALAAGKVDLAIIRGDLEVPKNAQAVATLRKNVAVLWVPSAGKGKGRK 119 Query: 140 -SARITKIAQLAGRKIGVVGRTPANVNLLKLILTQYGVDPMKVEIVQFPANEAAEAIRNL 198 +A+ITKI+QLAG K+G++GRTPAN NLLK++L QYGVDP KVE+VQFPA+EAAEA+R+ Sbjct: 120 GAAKITKISQLAGHKVGIIGRTPANANLLKVVLHQYGVDPAKVEMVQFPASEAAEAVRSQ 179 Query: 199 KADAYLAVGPANSKITIDAITASVKNGGEPSFLAIDASEAIAQNHPAYEAAEIPAGSLG- 257 KAD +LA GP NSKIT DAI A+ K+GG P+FLAID++EAIAQNHP YEAAEIPAG+ G Sbjct: 180 KADVWLAAGPVNSKITADAIAAATKDGGVPTFLAIDSAEAIAQNHPEYEAAEIPAGAFGG 239 Query: 258 SADRPDDEVKTISFSHHIVARKGLSDSTVAAFTRQLFAIRQSLKTDFPLAAKIETPDTDK 317 S DRP+DE+KTISF+HHIVARKGL+DSTV+AFT QLF++RQ L ++FPLAAKIETPDTDK Sbjct: 240 SPDRPEDEIKTISFNHHIVARKGLADSTVSAFTHQLFSVRQQLLSEFPLAAKIETPDTDK 299 Query: 318 DATIPVHPGAAAFVDGEEKTFLDRYSDYIWWSLMAFSAMGSAGAWFAGYLKQDERNTNTS 377 DA IP HPGAAAFVDGEEKTFLDRYSDYIWW LMA SAMGSAGAWFAGYLK+DER NTS Sbjct: 300 DAAIPAHPGAAAFVDGEEKTFLDRYSDYIWWGLMALSAMGSAGAWFAGYLKRDERTINTS 359 Query: 378 QRERLLEMLKAARQSDSIEELDQMQAEADDILRHTLDCFEHGAIEEGTLTAFNIALEQLH 437 R+RLLEM+ AR+SDS +ELDQ+QAEAD+ILR+TL CFE GAIE LTAFNIALEQ H Sbjct: 360 LRDRLLEMISIARKSDSTDELDQLQAEADEILRNTLTCFEDGAIEHAALTAFNIALEQFH 419 Query: 438 NAVADRKALLFSMPQNLQRTATQFRAAGT 466 NAVADRK +L SMP +LQRT Q RAAGT Sbjct: 420 NAVADRKLILMSMPAHLQRTGAQLRAAGT 448 >ref|YP_001236450.1| hypothetical protein BBta_0249 [Bradyrhizobium sp. BTAi1] gb|ABQ32544.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 448 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/449 (75%), Positives = 379/449 (84%), Gaps = 4/449 (0%) Query: 21 MFVLIAGALAIIGTLMAGYYFAVRPVTLRIAVGPANSDDLKVVQALAQAFNNQQQTQVKL 80 MF++IAG LAI+G L YYFA+RPVTL+IAVGP NSDDLKVVQAL QAF+ Q V+L Sbjct: 1 MFIVIAGILAIVGALAGAYYFAMRPVTLKIAVGPPNSDDLKVVQALTQAFS-QSHAAVRL 59 Query: 81 RPVQTEGATASAQTLADGKADLAIIRGDLEVPKNAQAVATLRKNVVVMWVPP-AKGKVRK 139 RPV TEGA SAQ LA K DLAI+RGDLEVPKNAQAVATLRKNV V+WVPP AKGK RK Sbjct: 60 RPVPTEGAAESAQALAAAKVDLAIVRGDLEVPKNAQAVATLRKNVAVLWVPPVAKGKGRK 119 Query: 140 S-ARITKIAQLAGRKIGVVGRTPANVNLLKLILTQYGVDPMKVEIVQFPANEAAEAIRNL 198 S A+ITKI+QL G K+G++GRTPANVNLLK++L QYGVD KV+IVQFP +EAAEA+RN Sbjct: 120 SGAKITKISQLPGHKVGIIGRTPANVNLLKIVLHQYGVDASKVDIVQFPISEAAEAVRNQ 179 Query: 199 KADAYLAVGPANSKITIDAITASVKNGGEPSFLAIDASEAIAQNHPAYEAAEIPAGSLG- 257 KAD YLA GP NSKIT DAI A+ K+GG P+FLAID++EAIAQNHP YEA EIPAG+ G Sbjct: 180 KADVYLAAGPINSKITADAIAAATKDGGVPTFLAIDSAEAIAQNHPEYEATEIPAGAFGG 239 Query: 258 SADRPDDEVKTISFSHHIVARKGLSDSTVAAFTRQLFAIRQSLKTDFPLAAKIETPDTDK 317 S DRP+DEVKTISF+HHIVARKGLSDSTV+ F RQLF++RQ L ++FPLAAKIETPDTDK Sbjct: 240 SPDRPEDEVKTISFNHHIVARKGLSDSTVSTFARQLFSVRQQLMSEFPLAAKIETPDTDK 299 Query: 318 DATIPVHPGAAAFVDGEEKTFLDRYSDYIWWSLMAFSAMGSAGAWFAGYLKQDERNTNTS 377 DA IP HPGAAAFVDGEEKTFLDRYSDYIWW LM SAMGSAGAWFAGYLK+DER N+S Sbjct: 300 DAAIPAHPGAAAFVDGEEKTFLDRYSDYIWWGLMTLSAMGSAGAWFAGYLKRDERTINSS 359 Query: 378 QRERLLEMLKAARQSDSIEELDQMQAEADDILRHTLDCFEHGAIEEGTLTAFNIALEQLH 437 R+RLLEM+ AR+SDS EELDQ+Q EAD+ILR+TL CFE GAIE LTAFNIALEQ H Sbjct: 360 LRDRLLEMITIARKSDSTEELDQLQGEADEILRNTLTCFEDGAIEHAALTAFNIALEQFH 419 Query: 438 NAVADRKALLFSMPQNLQRTATQFRAAGT 466 NAVADRK +L SMP NLQRT Q RAAGT Sbjct: 420 NAVADRKLILMSMPANLQRTGAQLRAAGT 448 >ref|YP_781626.1| TRAP transporter solute receptor TAXI family protein [Rhodopseudomonas palustris BisA53] gb|ABJ06646.1| TRAP transporter solute receptor, TAXI family [Rhodopseudomonas palustris BisA53] Length = 476 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 308/450 (68%), Positives = 373/450 (82%), Gaps = 4/450 (0%) Query: 10 PKPLRSAKRRLMFVLIAGALAIIGTLMAGYYFAVRPVTLRIAVGPANSDDLKVVQALAQA 69 P RS + + F+++AG LA++G + +GYYF +RPV LR AVGP SDD++VVQALAQA Sbjct: 25 PTAARSRREKASFIILAGVLAVVGAVASGYYFTMRPVPLRFAVGPQGSDDVRVVQALAQA 84 Query: 70 FNNQQQTQVKLRPVQTEGATASAQTLADGKADLAIIRGDLEVPKNAQAVATLRKNVVVMW 129 F+ + V+LRP+ T+GA SA+ LA+GKADLA+IRGDLEVPK+AQAVA LRKNV V+W Sbjct: 85 FSRDHNS-VRLRPLPTDGALGSAKALAEGKADLAVIRGDLEVPKDAQAVAVLRKNVAVIW 143 Query: 130 VPPAKGKVRKSARITKIAQLAGRKIGVVGRTPANVNLLKLILTQYGVDPMKVEIVQFPAN 189 VP K K + ARITKI Q+AG++IG++GRTPANV+LLK++L QYGVD K++IVQF + Sbjct: 144 VPAKKLK-KGEARITKITQIAGKRIGIIGRTPANVDLLKVVLQQYGVDTTKLDIVQFSTS 202 Query: 190 EAAEAIRNLKADAYLAVGPANSKITIDAITASVKNGGEPSFLAIDASEAIAQNHPAYEAA 249 E A+AI++ K + +LA GP NSKIT +AI+AS ++G PSFLAID++EAIAQNH +YE+A Sbjct: 203 EVADAIKDHKVEVFLAAGPVNSKITAEAISASSRDGA-PSFLAIDSAEAIAQNHASYESA 261 Query: 250 EIPAGSLG-SADRPDDEVKTISFSHHIVARKGLSDSTVAAFTRQLFAIRQSLKTDFPLAA 308 EIPAG+ G S RPDD+VKTISF+H IVARK LS+ TVAAFTRQLFA+RQSL TDFPLAA Sbjct: 262 EIPAGAFGGSPPRPDDDVKTISFNHLIVARKSLSEHTVAAFTRQLFAVRQSLMTDFPLAA 321 Query: 309 KIETPDTDKDATIPVHPGAAAFVDGEEKTFLDRYSDYIWWSLMAFSAMGSAGAWFAGYLK 368 KIETPDTDKDA IP HPGAAAFVDGEEKTFLDRYSDYIWWSLM FSA GS GAW A YL+ Sbjct: 322 KIETPDTDKDAAIPAHPGAAAFVDGEEKTFLDRYSDYIWWSLMGFSAFGSIGAWLASYLR 381 Query: 369 QDERNTNTSQRERLLEMLKAARQSDSIEELDQMQAEADDILRHTLDCFEHGAIEEGTLTA 428 +DERNTN +QRERLL+M+ AR+SDS++ELD +Q EAD ILR TL+C+E GAIEEGTLTA Sbjct: 382 KDERNTNFTQRERLLDMIATARKSDSMDELDALQQEADGILRDTLNCYESGAIEEGTLTA 441 Query: 429 FNIALEQLHNAVADRKALLFSMPQNLQRTA 458 FNIALEQ HNAVADRKALL S+P + RTA Sbjct: 442 FNIALEQFHNAVADRKALLLSLPPSPVRTA 471 >ref|YP_532395.1| TRAP transporter solute receptor TAXI family protein [Rhodopseudomonas palustris BisB18] gb|ABD88076.1| TRAP transporter solute receptor, TAXI family [Rhodopseudomonas palustris BisB18] Length = 486 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 302/430 (70%), Positives = 346/430 (80%), Gaps = 6/430 (1%) Query: 39 YYFAVRPVTLRIAVGPANSDDLKVVQALAQAFNNQQQTQVKLRPVQTEGATASAQTLADG 98 YYFA+RP TLRIAVGP NSDD++VVQAL QAF + V+LRPV T+GA SA LADG Sbjct: 54 YYFAMRPETLRIAVGPQNSDDVRVVQALTQAFARDHNS-VRLRPVLTDGALGSATALADG 112 Query: 99 KADLAIIRGDLEVPKNAQAVATLRKNVVVMWVPPAKGKVRKSARITKIA----QLAGRKI 154 KADLA+IRGDLEVPKNAQAVA LRKNV V+WVP K+ + QL G++I Sbjct: 113 KADLAVIRGDLEVPKNAQAVAVLRKNVAVLWVPAKPKSASKAKKAAAKISKIAQLDGKRI 172 Query: 155 GVVGRTPANVNLLKLILTQYGVDPMKVEIVQFPANEAAEAIRNLKADAYLAVGPANSKIT 214 G++GRT ANVNLLK++L QYGVDP KV+IVQF +E AEAI++ K DA+LA GP NSKIT Sbjct: 173 GIIGRTQANVNLLKVVLQQYGVDPAKVDIVQFSTSEVAEAIKDQKVDAFLAAGPVNSKIT 232 Query: 215 IDAITASVKNGGEPSFLAIDASEAIAQNHPAYEAAEIPAGSLGSAD-RPDDEVKTISFSH 273 DAI AS++ GG P+FL ID++EAIAQNHP YEAAEIPAG G A RP+DEVKTISF+H Sbjct: 233 ADAIAASIREGGAPTFLPIDSAEAIAQNHPMYEAAEIPAGVFGGAPARPEDEVKTISFAH 292 Query: 274 HIVARKGLSDSTVAAFTRQLFAIRQSLKTDFPLAAKIETPDTDKDATIPVHPGAAAFVDG 333 HIVARKGL D TV+AFTRQLFAIRQ++ +FPLAAKIETPDTDKDA IPVHPGAAA+VDG Sbjct: 293 HIVARKGLPDPTVSAFTRQLFAIRQTVMNEFPLAAKIETPDTDKDAAIPVHPGAAAYVDG 352 Query: 334 EEKTFLDRYSDYIWWSLMAFSAMGSAGAWFAGYLKQDERNTNTSQRERLLEMLKAARQSD 393 EEKTFLDRYSDYIWWSLM SA+GS GAWFAGYL++DER N+ RERLL+M+ AR+SD Sbjct: 353 EEKTFLDRYSDYIWWSLMGASALGSIGAWFAGYLRKDERTNNSWLRERLLDMIAMARKSD 412 Query: 394 SIEELDQMQAEADDILRHTLDCFEHGAIEEGTLTAFNIALEQLHNAVADRKALLFSMPQN 453 S +ELD MQAEAD+ILR TL CFE+GAIEEGTLTAFNIALEQ HNAVADRKALL PQ+ Sbjct: 413 STDELDAMQAEADNILRDTLTCFENGAIEEGTLTAFNIALEQFHNAVADRKALLALAPQS 472 Query: 454 LQRTATQFRA 463 R Q A Sbjct: 473 PPRANVQLLA 482